Wall clock time and date at job start Mon Mar 30 2020 03:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99795 * 2 1 4 4 H 1.48499 * 109.46530 * 269.99478 * 3 2 1 5 5 H 1.48499 * 109.47241 * 29.99644 * 3 2 1 6 6 H 1.48501 * 109.46946 * 149.99726 * 3 2 1 7 7 C 1.37871 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00531 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47146 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47128 * 179.97438 * 12 11 10 14 14 O 1.46302 * 110.99929 * 180.02562 * 13 12 11 15 15 C 1.42898 * 114.00115 * 179.97438 * 14 13 12 16 16 C 1.54894 * 110.48190 * 88.24432 * 15 14 13 17 17 C 1.55238 * 102.58338 * 156.67678 * 16 15 14 18 18 C 1.54266 * 104.23333 * 322.08174 * 17 16 15 19 19 C 1.53869 * 106.59800 * 23.61579 * 18 17 16 20 20 H 0.96998 * 119.99990 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46448 * 60.00252 * 9 7 2 22 22 H 1.08993 * 109.47138 * 300.00624 * 9 7 2 23 23 H 1.09001 * 109.47052 * 60.00332 * 10 9 7 24 24 H 1.09006 * 109.47238 * 300.00019 * 10 9 7 25 25 H 1.09001 * 109.47184 * 60.00204 * 11 10 9 26 26 H 1.08993 * 109.47592 * 300.00099 * 11 10 9 27 27 H 1.09001 * 109.46849 * 60.00076 * 12 11 10 28 28 H 1.09002 * 109.47171 * 300.00686 * 12 11 10 29 29 H 1.00900 * 111.00107 * 56.05147 * 13 12 11 30 30 H 1.09002 * 110.43427 * 325.70317 * 15 14 13 31 31 H 1.08996 * 110.75388 * 275.06031 * 16 15 14 32 32 H 1.08993 * 110.76071 * 38.44257 * 16 15 14 33 33 H 1.09005 * 110.46917 * 203.39204 * 17 16 15 34 34 H 1.09007 * 110.58541 * 80.83124 * 17 16 15 35 35 H 1.08999 * 110.03060 * 264.32313 * 18 17 16 36 36 H 1.09006 * 110.06829 * 142.91691 * 18 17 16 37 37 H 1.09001 * 110.02983 * 240.71432 * 19 18 17 38 38 H 1.08996 * 110.07773 * 119.30576 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 6 6.0616 -4.0790 0.0009 13 7 7.5306 -4.0790 0.0003 14 8 8.0549 -5.4448 0.0004 15 6 9.4819 -5.5196 -0.0007 16 6 10.0266 -5.5030 1.4492 17 6 11.4146 -6.1815 1.2968 18 6 11.1799 -7.2957 0.2561 19 6 9.9511 -6.8749 -0.5689 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6796 0.8895 22 1 3.8746 -0.6807 -0.8904 23 1 3.6579 -3.1505 -0.8897 24 1 3.6586 -3.1502 0.8904 25 1 5.9148 -2.1226 0.8901 26 1 5.9149 -2.1228 -0.8898 27 1 5.6983 -4.5933 -0.8889 28 1 5.6981 -4.5925 0.8911 29 1 7.8925 -3.5524 0.7812 30 1 9.9056 -4.6971 -0.5769 31 1 10.1315 -4.4801 1.8107 32 1 9.3833 -6.0836 2.1103 33 1 11.7366 -6.6084 2.2467 34 1 12.1523 -5.4671 0.9311 35 1 10.9850 -8.2423 0.7601 36 1 12.0505 -7.3908 -0.3929 37 1 9.1598 -7.6173 -0.4653 38 1 10.2247 -6.7652 -1.6183 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385187463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:02 Heat of formation + Delta-G solvation = -36.497395 kcal Electronic energy + Delta-G solvation = -15185.227435 eV Core-core repulsion = 12642.075583 eV Total energy + Delta-G solvation = -2543.151852 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.68481 -36.42244 -34.94364 -32.92534 -31.27674 -29.02325 -28.27481 -27.06151 -24.03088 -21.40387 -20.92403 -20.39698 -20.07537 -17.55890 -16.61127 -16.04191 -15.65828 -15.17447 -14.59924 -14.21408 -13.71338 -13.44757 -13.36212 -12.70110 -12.52597 -12.37761 -11.92104 -11.78647 -11.52261 -11.42949 -11.26445 -10.91286 -10.84842 -10.75973 -10.63898 -10.20451 -9.89582 -9.70162 -9.55648 -9.15768 -8.65789 -8.51793 -6.02363 -4.00264 2.66016 3.32423 3.39459 3.43339 4.30308 4.33706 4.47086 4.49444 4.90040 5.09932 5.14623 5.19471 5.24579 5.31322 5.32905 5.35300 5.46367 5.57546 5.66472 5.72507 5.77166 5.82166 5.89230 5.96344 6.00542 6.16922 6.32457 6.56372 6.67673 6.72860 6.94734 7.26521 7.33205 7.45817 7.81899 8.56423 9.02883 9.60311 11.11238 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.072372 B = 0.003411 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.796610 B = 8206.344844 C = 8411.170330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.099 4.099 11 C -0.114 4.114 12 C 0.050 3.950 13 N -0.508 5.508 14 O -0.248 6.248 15 C 0.081 3.919 16 C -0.154 4.154 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.117 4.117 20 H 0.263 0.737 21 H 0.015 0.985 22 H 0.012 0.988 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.331 0.669 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.903 -11.365 1.592 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.153 4.153 12 C -0.079 4.079 13 N -0.178 5.178 14 O -0.256 6.256 15 C 0.022 3.978 16 C -0.192 4.192 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.156 4.156 20 H 0.072 0.928 21 H 0.033 0.967 22 H 0.030 0.970 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.146 0.854 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.665 -11.381 0.896 25.378 hybrid contribution 0.246 0.842 1.035 1.357 sum 22.911 -10.539 1.932 25.292 Atomic orbital electron populations 1.69923 1.06320 1.26853 1.51339 1.25052 0.94744 0.99228 0.94614 0.86752 0.80316 0.83549 0.78508 1.20281 1.21451 1.19024 1.21178 0.89621 0.94460 1.50607 0.91065 1.19573 0.97049 0.92261 0.96237 1.21412 0.90937 1.00054 1.01343 1.21650 0.98101 0.93225 1.02295 1.22307 0.84356 0.99139 1.02082 1.66797 1.09312 0.95712 1.45958 1.90789 1.20234 1.18006 1.96548 1.22957 0.81529 0.98276 0.95002 1.23155 0.97028 1.01011 0.98022 1.22313 0.96803 0.97737 0.99162 1.22086 0.97595 0.98751 0.97537 1.22120 0.97684 0.96250 0.99583 0.92775 0.96703 0.96978 0.92479 0.92764 0.92420 0.91232 0.89812 0.94044 0.85442 0.90473 0.91443 0.90854 0.91498 0.91421 0.91575 0.91528 0.90701 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.95 5.15 -26.73 -0.14 -2.09 16 11 C -0.11 -1.81 5.47 -26.73 -0.15 -1.96 16 12 C 0.05 0.73 6.22 -3.82 -0.02 0.70 16 13 N -0.51 -6.83 7.31 -10.37 -0.08 -6.91 16 14 O -0.25 -3.38 10.99 -13.92 -0.15 -3.54 16 15 C 0.08 0.85 3.59 -25.07 -0.09 0.76 16 16 C -0.15 -1.37 6.65 -24.55 -0.16 -1.53 16 17 C -0.12 -0.87 6.84 -24.88 -0.17 -1.04 16 18 C -0.12 -0.86 6.80 -25.62 -0.17 -1.04 16 19 C -0.12 -1.04 6.56 -25.62 -0.17 -1.21 16 20 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 21 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 22 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 23 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.33 3.89 8.92 -39.29 -0.35 3.54 16 30 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 308.95 15.07 4.66 4.66 Total: -1.00 -31.13 308.95 -8.12 -39.25 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.04 Total: -1.77 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.62 Total: -21.46 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.70 Total: -34.45 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: -0.15 Total: -3.54 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.13 -8.12 -39.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.754 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds