Wall clock time and date at job start Mon Mar 30 2020 03:19:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86804 * 119.99795 * 2 1
4 4 H 1.48499 * 109.46530 * 269.99478 * 3 2 1
5 5 H 1.48499 * 109.47241 * 29.99644 * 3 2 1
6 6 H 1.48501 * 109.46946 * 149.99726 * 3 2 1
7 7 C 1.37871 * 119.99876 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00531 * 0.02562 * 7 2 1
9 9 C 1.50710 * 119.99964 * 179.97438 * 7 2 1
10 10 C 1.52999 * 109.47088 * 180.02562 * 9 7 2
11 11 C 1.52995 * 109.46867 * 180.02562 * 10 9 7
12 12 C 1.53005 * 109.47146 * 179.97438 * 11 10 9
13 13 N 1.46897 * 109.47128 * 179.97438 * 12 11 10
14 14 O 1.46302 * 110.99929 * 180.02562 * 13 12 11
15 15 C 1.42898 * 114.00115 * 179.97438 * 14 13 12
16 16 C 1.54894 * 110.48190 * 88.24432 * 15 14 13
17 17 C 1.55238 * 102.58338 * 156.67678 * 16 15 14
18 18 C 1.54266 * 104.23333 * 322.08174 * 17 16 15
19 19 C 1.53869 * 106.59800 * 23.61579 * 18 17 16
20 20 H 0.96998 * 119.99990 * 0.02562 * 1 2 3
21 21 H 1.08998 * 109.46448 * 60.00252 * 9 7 2
22 22 H 1.08993 * 109.47138 * 300.00624 * 9 7 2
23 23 H 1.09001 * 109.47052 * 60.00332 * 10 9 7
24 24 H 1.09006 * 109.47238 * 300.00019 * 10 9 7
25 25 H 1.09001 * 109.47184 * 60.00204 * 11 10 9
26 26 H 1.08993 * 109.47592 * 300.00099 * 11 10 9
27 27 H 1.09001 * 109.46849 * 60.00076 * 12 11 10
28 28 H 1.09002 * 109.47171 * 300.00686 * 12 11 10
29 29 H 1.00900 * 111.00107 * 56.05147 * 13 12 11
30 30 H 1.09002 * 110.43427 * 325.70317 * 15 14 13
31 31 H 1.08996 * 110.75388 * 275.06031 * 16 15 14
32 32 H 1.08993 * 110.76071 * 38.44257 * 16 15 14
33 33 H 1.09005 * 110.46917 * 203.39204 * 17 16 15
34 34 H 1.09007 * 110.58541 * 80.83124 * 17 16 15
35 35 H 1.08999 * 110.03060 * 264.32313 * 18 17 16
36 36 H 1.09006 * 110.06829 * 142.91691 * 18 17 16
37 37 H 1.09001 * 110.02983 * 240.71432 * 19 18 17
38 38 H 1.08996 * 110.07773 * 119.30576 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5467 1.4403 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4646 -2.1293 0.0005
9 6 3.5116 -1.1940 0.0000
10 6 4.0216 -2.6365 0.0001
11 6 5.5515 -2.6365 0.0001
12 6 6.0616 -4.0790 0.0009
13 7 7.5306 -4.0790 0.0003
14 8 8.0549 -5.4448 0.0004
15 6 9.4819 -5.5196 -0.0007
16 6 10.0266 -5.5030 1.4492
17 6 11.4146 -6.1815 1.2968
18 6 11.1799 -7.2957 0.2561
19 6 9.9511 -6.8749 -0.5689
20 1 -0.4850 0.8400 -0.0004
21 1 3.8752 -0.6796 0.8895
22 1 3.8746 -0.6807 -0.8904
23 1 3.6579 -3.1505 -0.8897
24 1 3.6586 -3.1502 0.8904
25 1 5.9148 -2.1226 0.8901
26 1 5.9149 -2.1228 -0.8898
27 1 5.6983 -4.5933 -0.8889
28 1 5.6981 -4.5925 0.8911
29 1 7.8925 -3.5524 0.7812
30 1 9.9056 -4.6971 -0.5769
31 1 10.1315 -4.4801 1.8107
32 1 9.3833 -6.0836 2.1103
33 1 11.7366 -6.6084 2.2467
34 1 12.1523 -5.4671 0.9311
35 1 10.9850 -8.2423 0.7601
36 1 12.0505 -7.3908 -0.3929
37 1 9.1598 -7.6173 -0.4653
38 1 10.2247 -6.7652 -1.6183
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385187463.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:02
Heat of formation + Delta-G solvation = -36.497395 kcal
Electronic energy + Delta-G solvation = -15185.227435 eV
Core-core repulsion = 12642.075583 eV
Total energy + Delta-G solvation = -2543.151852 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-38.68481 -36.42244 -34.94364 -32.92534 -31.27674 -29.02325 -28.27481 -27.06151
-24.03088 -21.40387 -20.92403 -20.39698 -20.07537 -17.55890 -16.61127 -16.04191
-15.65828 -15.17447 -14.59924 -14.21408 -13.71338 -13.44757 -13.36212 -12.70110
-12.52597 -12.37761 -11.92104 -11.78647 -11.52261 -11.42949 -11.26445 -10.91286
-10.84842 -10.75973 -10.63898 -10.20451 -9.89582 -9.70162 -9.55648 -9.15768
-8.65789 -8.51793 -6.02363 -4.00264 2.66016 3.32423 3.39459 3.43339
4.30308 4.33706 4.47086 4.49444 4.90040 5.09932 5.14623 5.19471
5.24579 5.31322 5.32905 5.35300 5.46367 5.57546 5.66472 5.72507
5.77166 5.82166 5.89230 5.96344 6.00542 6.16922 6.32457 6.56372
6.67673 6.72860 6.94734 7.26521 7.33205 7.45817 7.81899 8.56423
9.02883 9.60311 11.11238
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.072372 B = 0.003411 C = 0.003328
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 386.796610 B = 8206.344844 C = 8411.170330
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.064 3.936
3 Si 0.881 3.119
4 H -0.277 1.277
5 H -0.288 1.288
6 H -0.266 1.266
7 C -0.521 4.521
8 H 0.071 0.929
9 C -0.014 4.014
10 C -0.099 4.099
11 C -0.114 4.114
12 C 0.050 3.950
13 N -0.508 5.508
14 O -0.248 6.248
15 C 0.081 3.919
16 C -0.154 4.154
17 C -0.122 4.122
18 C -0.122 4.122
19 C -0.117 4.117
20 H 0.263 0.737
21 H 0.015 0.985
22 H 0.012 0.988
23 H 0.056 0.944
24 H 0.054 0.946
25 H 0.057 0.943
26 H 0.069 0.931
27 H 0.083 0.917
28 H 0.041 0.959
29 H 0.331 0.669
30 H 0.077 0.923
31 H 0.067 0.933
32 H 0.073 0.927
33 H 0.066 0.934
34 H 0.067 0.933
35 H 0.065 0.935
36 H 0.066 0.934
37 H 0.074 0.926
38 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.903 -11.365 1.592 25.617
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.136 4.136
3 Si 0.709 3.291
4 H -0.203 1.203
5 H -0.215 1.215
6 H -0.190 1.190
7 C -0.559 4.559
8 H 0.089 0.911
9 C -0.051 4.051
10 C -0.137 4.137
11 C -0.153 4.153
12 C -0.079 4.079
13 N -0.178 5.178
14 O -0.256 6.256
15 C 0.022 3.978
16 C -0.192 4.192
17 C -0.160 4.160
18 C -0.160 4.160
19 C -0.156 4.156
20 H 0.072 0.928
21 H 0.033 0.967
22 H 0.030 0.970
23 H 0.075 0.925
24 H 0.072 0.928
25 H 0.076 0.924
26 H 0.088 0.912
27 H 0.102 0.898
28 H 0.060 0.940
29 H 0.146 0.854
30 H 0.095 0.905
31 H 0.086 0.914
32 H 0.091 0.909
33 H 0.085 0.915
34 H 0.086 0.914
35 H 0.084 0.916
36 H 0.085 0.915
37 H 0.093 0.907
38 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 22.665 -11.381 0.896 25.378
hybrid contribution 0.246 0.842 1.035 1.357
sum 22.911 -10.539 1.932 25.292
Atomic orbital electron populations
1.69923 1.06320 1.26853 1.51339 1.25052 0.94744 0.99228 0.94614
0.86752 0.80316 0.83549 0.78508 1.20281 1.21451 1.19024 1.21178
0.89621 0.94460 1.50607 0.91065 1.19573 0.97049 0.92261 0.96237
1.21412 0.90937 1.00054 1.01343 1.21650 0.98101 0.93225 1.02295
1.22307 0.84356 0.99139 1.02082 1.66797 1.09312 0.95712 1.45958
1.90789 1.20234 1.18006 1.96548 1.22957 0.81529 0.98276 0.95002
1.23155 0.97028 1.01011 0.98022 1.22313 0.96803 0.97737 0.99162
1.22086 0.97595 0.98751 0.97537 1.22120 0.97684 0.96250 0.99583
0.92775 0.96703 0.96978 0.92479 0.92764 0.92420 0.91232 0.89812
0.94044 0.85442 0.90473 0.91443 0.90854 0.91498 0.91421 0.91575
0.91528 0.90701 0.90994
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16
2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16
3 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16
4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16
5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16
7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16
8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16
9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16
10 C -0.10 -1.95 5.15 -26.73 -0.14 -2.09 16
11 C -0.11 -1.81 5.47 -26.73 -0.15 -1.96 16
12 C 0.05 0.73 6.22 -3.82 -0.02 0.70 16
13 N -0.51 -6.83 7.31 -10.37 -0.08 -6.91 16
14 O -0.25 -3.38 10.99 -13.92 -0.15 -3.54 16
15 C 0.08 0.85 3.59 -25.07 -0.09 0.76 16
16 C -0.15 -1.37 6.65 -24.55 -0.16 -1.53 16
17 C -0.12 -0.87 6.84 -24.88 -0.17 -1.04 16
18 C -0.12 -0.86 6.80 -25.62 -0.17 -1.04 16
19 C -0.12 -1.04 6.56 -25.62 -0.17 -1.21 16
20 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
21 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16
22 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16
23 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16
24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
27 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16
28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.33 3.89 8.92 -39.29 -0.35 3.54 16
30 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16
31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
37 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16
38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
LS Contribution 308.95 15.07 4.66 4.66
Total: -1.00 -31.13 308.95 -8.12 -39.25
By element:
Atomic # 1 Polarization: 5.27 SS G_CDS: -7.04 Total: -1.77 kcal
Atomic # 6 Polarization: -19.84 SS G_CDS: -1.62 Total: -21.46 kcal
Atomic # 7 Polarization: -35.15 SS G_CDS: 0.70 Total: -34.45 kcal
Atomic # 8 Polarization: -3.38 SS G_CDS: -0.15 Total: -3.54 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -31.13 -8.12 -39.25 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385187463.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.754 kcal
(2) G-P(sol) polarization free energy of solvation -31.127 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.497 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds