Wall clock time and date at job start Mon Mar 30 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99795 * 2 1 4 4 H 1.48499 * 109.46530 * 269.99478 * 3 2 1 5 5 H 1.48499 * 109.47241 * 29.99644 * 3 2 1 6 6 H 1.48501 * 109.46946 * 149.99726 * 3 2 1 7 7 C 1.37871 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00531 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47146 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47128 * 179.97438 * 12 11 10 14 14 O 1.46302 * 110.99929 * 180.02562 * 13 12 11 15 15 C 1.42898 * 114.00115 * 179.97438 * 14 13 12 16 16 C 1.54894 * 110.48190 * 88.24432 * 15 14 13 17 17 C 1.55238 * 102.58338 * 156.67678 * 16 15 14 18 18 C 1.54266 * 104.23333 * 322.08174 * 17 16 15 19 19 C 1.53869 * 106.59800 * 23.61579 * 18 17 16 20 20 H 0.96998 * 119.99990 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46448 * 60.00252 * 9 7 2 22 22 H 1.08993 * 109.47138 * 300.00624 * 9 7 2 23 23 H 1.09001 * 109.47052 * 60.00332 * 10 9 7 24 24 H 1.09006 * 109.47238 * 300.00019 * 10 9 7 25 25 H 1.09001 * 109.47184 * 60.00204 * 11 10 9 26 26 H 1.08993 * 109.47592 * 300.00099 * 11 10 9 27 27 H 1.09001 * 109.46849 * 60.00076 * 12 11 10 28 28 H 1.09002 * 109.47171 * 300.00686 * 12 11 10 29 29 H 1.00900 * 111.00107 * 56.05147 * 13 12 11 30 30 H 1.09002 * 110.43427 * 325.70317 * 15 14 13 31 31 H 1.08996 * 110.75388 * 275.06031 * 16 15 14 32 32 H 1.08993 * 110.76071 * 38.44257 * 16 15 14 33 33 H 1.09005 * 110.46917 * 203.39204 * 17 16 15 34 34 H 1.09007 * 110.58541 * 80.83124 * 17 16 15 35 35 H 1.08999 * 110.03060 * 264.32313 * 18 17 16 36 36 H 1.09006 * 110.06829 * 142.91691 * 18 17 16 37 37 H 1.09001 * 110.02983 * 240.71432 * 19 18 17 38 38 H 1.08996 * 110.07773 * 119.30576 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 6 6.0616 -4.0790 0.0009 13 7 7.5306 -4.0790 0.0003 14 8 8.0549 -5.4448 0.0004 15 6 9.4819 -5.5196 -0.0007 16 6 10.0266 -5.5030 1.4492 17 6 11.4146 -6.1815 1.2968 18 6 11.1799 -7.2957 0.2561 19 6 9.9511 -6.8749 -0.5689 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6796 0.8895 22 1 3.8746 -0.6807 -0.8904 23 1 3.6579 -3.1505 -0.8897 24 1 3.6586 -3.1502 0.8904 25 1 5.9148 -2.1226 0.8901 26 1 5.9149 -2.1228 -0.8898 27 1 5.6983 -4.5933 -0.8889 28 1 5.6981 -4.5925 0.8911 29 1 7.8925 -3.5524 0.7812 30 1 9.9056 -4.6971 -0.5769 31 1 10.1315 -4.4801 1.8107 32 1 9.3833 -6.0836 2.1103 33 1 11.7366 -6.6084 2.2467 34 1 12.1523 -5.4671 0.9311 35 1 10.9850 -8.2423 0.7601 36 1 12.0505 -7.3908 -0.3929 37 1 9.1598 -7.6173 -0.4653 38 1 10.2247 -6.7652 -1.6183 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385187463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:01 Heat of formation + Delta-G solvation = -55.467003 kcal Electronic energy + Delta-G solvation = -15186.050019 eV Core-core repulsion = 12642.075583 eV Total energy + Delta-G solvation = -2543.974436 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45539 -37.58866 -36.23952 -34.76593 -32.91516 -29.82010 -29.55330 -28.03916 -25.69472 -22.82082 -21.86864 -21.54780 -21.09095 -18.91590 -18.39512 -16.91676 -16.69574 -16.31399 -15.99143 -15.78687 -14.81412 -14.57565 -14.44784 -14.22945 -13.81213 -13.68230 -13.39098 -12.96178 -12.88416 -12.46090 -12.15501 -12.11527 -12.03192 -11.76218 -11.69590 -11.45077 -11.36016 -11.34849 -11.25821 -11.05666 -10.75719 -9.69821 -8.28986 -6.33524 1.37395 1.39266 1.51618 1.66110 2.37483 3.06488 3.65277 3.67698 3.76213 3.98561 4.10993 4.16633 4.33179 4.45635 4.49783 4.53205 4.55986 4.67399 4.75372 4.79626 4.83785 4.94096 5.04162 5.07221 5.12509 5.15965 5.18548 5.24303 5.27547 5.43827 5.55235 5.61693 5.68110 5.69638 6.29244 6.33214 6.75120 7.31354 8.88115 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.072372 B = 0.003411 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.796610 B = 8206.344844 C = 8411.170330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.012 4.012 10 C -0.094 4.094 11 C -0.100 4.100 12 C 0.058 3.942 13 N -0.509 5.509 14 O -0.267 6.267 15 C 0.073 3.927 16 C -0.152 4.152 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.118 4.118 20 H 0.266 0.734 21 H 0.022 0.978 22 H 0.020 0.980 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.341 0.659 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.818 -10.647 1.807 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.050 4.050 10 C -0.132 4.132 11 C -0.138 4.138 12 C -0.071 4.071 13 N -0.179 5.179 14 O -0.276 6.276 15 C 0.014 3.986 16 C -0.190 4.190 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.157 4.157 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.039 0.961 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.157 0.843 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 25.605 -10.681 1.116 27.766 hybrid contribution -0.711 0.516 0.960 1.301 sum 24.894 -10.165 2.075 26.969 Atomic orbital electron populations 1.70086 1.08443 1.28204 1.52816 1.26108 0.95681 1.03836 0.94077 0.85576 0.79518 0.77782 0.79265 1.19112 1.21060 1.16637 1.21576 0.92486 0.93044 1.50325 0.95290 1.19540 0.93560 0.95139 0.96714 1.21272 0.93901 0.97252 1.00807 1.21419 0.94872 0.94339 1.03199 1.22084 0.85288 0.98052 1.01676 1.66677 1.08414 0.96139 1.46685 1.90769 1.22234 1.17788 1.96776 1.23211 0.79996 0.99095 0.96261 1.23125 0.97837 1.01395 0.96674 1.22325 0.95820 0.97781 0.99722 1.22092 0.97166 0.98848 0.97530 1.22164 0.98128 0.95115 1.00301 0.92514 0.95930 0.96119 0.93248 0.93316 0.91017 0.90762 0.90618 0.94213 0.84269 0.90397 0.90955 0.91931 0.90537 0.90468 0.91214 0.90069 0.91884 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 2 C 0.00 -0.05 5.47 84.65 0.46 0.42 16 3 Si 0.96 44.61 27.47 68.60 1.88 46.49 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.24 -10.39 6.54 99.48 0.65 -9.73 16 7 C -0.54 -31.63 9.66 25.60 0.25 -31.38 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.09 -3.63 5.15 30.59 0.16 -3.47 16 11 C -0.10 -2.96 5.47 30.59 0.17 -2.79 16 12 C 0.06 1.61 6.22 86.31 0.54 2.15 16 13 N -0.51 -12.85 7.31 -186.71 -1.36 -14.21 16 14 O -0.27 -7.02 10.99 -50.16 -0.55 -7.57 16 15 C 0.07 1.42 3.59 31.67 0.11 1.53 16 16 C -0.15 -2.45 6.65 32.01 0.21 -2.24 16 17 C -0.12 -1.41 6.84 31.79 0.22 -1.19 16 18 C -0.12 -1.42 6.80 31.32 0.21 -1.21 16 19 C -0.12 -1.94 6.56 31.32 0.21 -1.73 16 20 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 21 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 22 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 23 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.34 7.31 8.92 -89.69 -0.80 6.51 16 30 H 0.08 1.50 8.11 -2.39 -0.02 1.48 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.06 1.17 8.07 -2.39 -0.02 1.15 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -67.29 308.95 3.07 -64.22 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.14 Total: 12.19 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 2.66 Total: -40.36 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -1.07 Total: -74.97 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.55 Total: -7.57 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -67.29 3.07 -64.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.752 kcal (2) G-P(sol) polarization free energy of solvation -67.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds