Wall clock time and date at job start Mon Mar 30 2020 03:24:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86795 * 120.00228 * 2 1
4 4 H 1.48506 * 109.46891 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47091 * 299.99614 * 3 2 1
6 6 H 1.48499 * 109.47362 * 60.00016 * 3 2 1
7 7 C 1.37882 * 119.99550 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99702 * 180.02562 * 7 2 1
9 9 C 1.50700 * 120.00480 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.47429 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.47276 * 179.97438 * 10 9 7
12 12 C 1.52995 * 109.47111 * 179.97438 * 11 10 9
13 13 O 1.42899 * 109.46936 * 180.02562 * 12 11 10
14 14 C 1.42906 * 113.99948 * 180.02562 * 13 12 11
15 15 H 1.08995 * 110.01442 * 331.39332 * 14 13 12
16 16 C 1.54463 * 110.12156 * 92.67602 * 14 13 12
17 17 C 1.54890 * 104.10368 * 142.72764 * 16 14 13
18 18 C 1.54887 * 102.91108 * 322.30112 * 17 16 14
19 19 C 1.53877 * 110.03186 * 210.00040 * 14 13 12
20 20 H 1.08997 * 110.07404 * 121.41021 * 19 14 13
21 21 N 1.46899 * 110.03055 * 0.02562 * 19 14 13
22 22 H 0.96992 * 119.99901 * 0.02562 * 1 2 3
23 23 H 1.08995 * 109.47161 * 59.99424 * 9 7 2
24 24 H 1.09002 * 109.46541 * 299.99507 * 9 7 2
25 25 H 1.09001 * 109.47003 * 59.99388 * 10 9 7
26 26 H 1.09001 * 109.46844 * 299.99928 * 10 9 7
27 27 H 1.09000 * 109.46476 * 60.00122 * 11 10 9
28 28 H 1.08993 * 109.46918 * 300.00109 * 11 10 9
29 29 H 1.09000 * 109.47064 * 60.00833 * 12 11 10
30 30 H 1.08993 * 109.47606 * 300.00039 * 12 11 10
31 31 H 1.09003 * 110.40626 * 24.13789 * 16 14 13
32 32 H 1.09003 * 110.65885 * 261.44014 * 16 14 13
33 33 H 1.09002 * 110.75897 * 203.89231 * 17 16 14
34 34 H 1.09006 * 110.75292 * 80.70460 * 17 16 14
35 35 H 1.09004 * 110.48468 * 156.53190 * 18 17 16
36 36 H 1.09006 * 110.48476 * 279.16949 * 18 17 16
37 37 H 1.00901 * 110.99772 * 181.38288 * 21 19 14
38 38 H 1.00896 * 111.00076 * 305.32848 * 21 19 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3462 0.0006
5 1 1.8906 2.3963 -1.2125
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1942 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2510 -2.4993 0.0005
10 6 2.2451 -3.6622 0.0005
11 6 1.4801 -4.9872 0.0012
12 6 2.4743 -6.1501 0.0005
13 8 1.7597 -7.3876 0.0005
14 6 2.5997 -8.5438 0.0005
15 1 3.5463 -8.3171 -0.4898
16 6 2.8572 -9.0135 1.4493
17 6 2.8602 -10.5592 1.3501
18 6 1.7465 -10.8414 0.3112
19 6 1.8966 -9.7061 -0.7223
20 1 2.5017 -10.0444 -1.5633
21 7 0.5736 -9.2775 -1.1956
22 1 -0.4849 0.8400 -0.0004
23 1 0.6246 -2.5572 -0.8896
24 1 0.6241 -2.5567 0.8904
25 1 2.8719 -3.6044 0.8905
26 1 2.8718 -3.6045 -0.8895
27 1 0.8532 -5.0451 -0.8886
28 1 0.8538 -5.0446 0.8913
29 1 3.1015 -6.0924 0.8901
30 1 3.1003 -6.0925 -0.8898
31 1 2.0563 -8.6749 2.1067
32 1 3.8222 -8.6522 1.8049
33 1 2.6139 -11.0086 2.3121
34 1 3.8237 -10.9214 0.9914
35 1 1.9028 -11.8110 -0.1617
36 1 0.7649 -10.8001 0.7835
37 1 0.0899 -10.0360 -1.6526
38 1 0.0228 -8.9019 -0.4383
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385230201.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:41
Heat of formation + Delta-G solvation = -78.784541 kcal
Electronic energy + Delta-G solvation = -15589.470607 eV
Core-core repulsion = 13044.485046 eV
Total energy + Delta-G solvation = -2544.985561 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.30611 -36.50730 -34.33843 -32.63924 -32.21884 -28.93495 -27.59893 -26.32787
-24.57147 -21.67651 -21.05619 -20.29354 -19.68545 -17.08476 -16.33869 -16.08059
-15.57803 -14.80235 -14.65757 -14.39856 -13.85567 -13.46642 -13.31301 -12.80271
-12.40813 -12.06640 -11.75119 -11.48823 -11.34845 -11.20172 -11.03805 -10.96207
-10.72494 -10.56992 -10.45273 -10.31081 -9.60715 -9.26020 -9.24127 -8.97861
-8.62069 -8.29698 -5.94598 -3.96713 3.34274 3.41368 3.45707 3.76667
4.31786 4.35721 4.50400 4.60337 4.85301 5.11077 5.18206 5.25629
5.35176 5.40834 5.42368 5.50608 5.58884 5.68125 5.70790 5.83662
5.89367 5.96328 6.05033 6.21133 6.28608 6.57161 6.87331 7.00053
7.06688 7.19545 7.48386 7.57719 7.75110 7.90726 8.06801 8.49176
9.10959 9.66928 11.16867
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.065606 B = 0.003791 C = 0.003683
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 426.689982 B = 7383.687706 C = 7601.311010
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.055 3.945
3 Si 0.891 3.109
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.519 4.519
8 H 0.055 0.945
9 C 0.021 3.979
10 C -0.107 4.107
11 C -0.114 4.114
12 C 0.065 3.935
13 O -0.365 6.365
14 C 0.088 3.912
15 H 0.063 0.937
16 C -0.151 4.151
17 C -0.121 4.121
18 C -0.160 4.160
19 C 0.091 3.909
20 H 0.084 0.916
21 N -0.828 5.828
22 H 0.259 0.741
23 H 0.017 0.983
24 H 0.016 0.984
25 H 0.046 0.954
26 H 0.047 0.953
27 H 0.065 0.935
28 H 0.062 0.938
29 H 0.040 0.960
30 H 0.043 0.957
31 H 0.077 0.923
32 H 0.067 0.933
33 H 0.066 0.934
34 H 0.067 0.933
35 H 0.065 0.935
36 H 0.067 0.933
37 H 0.333 0.667
38 H 0.351 0.649
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.735 -21.689 1.120 22.228
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.146 4.146
3 Si 0.719 3.281
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.211 1.211
7 C -0.558 4.558
8 H 0.073 0.927
9 C -0.016 4.016
10 C -0.145 4.145
11 C -0.152 4.152
12 C -0.012 4.012
13 O -0.283 6.283
14 C 0.029 3.971
15 H 0.081 0.919
16 C -0.189 4.189
17 C -0.159 4.159
18 C -0.200 4.200
19 C -0.021 4.021
20 H 0.102 0.898
21 N -0.357 5.357
22 H 0.069 0.931
23 H 0.035 0.965
24 H 0.034 0.966
25 H 0.065 0.935
26 H 0.066 0.934
27 H 0.084 0.916
28 H 0.081 0.919
29 H 0.059 0.941
30 H 0.061 0.939
31 H 0.096 0.904
32 H 0.086 0.914
33 H 0.085 0.915
34 H 0.086 0.914
35 H 0.084 0.916
36 H 0.085 0.915
37 H 0.146 0.854
38 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 4.779 -21.036 0.646 21.581
hybrid contribution 0.416 0.217 0.717 0.857
sum 5.194 -20.819 1.364 21.500
Atomic orbital electron populations
1.69981 1.06041 1.26397 1.51099 1.25041 0.94851 0.99243 0.95456
0.86548 0.80103 0.83878 0.77538 1.19775 1.21031 1.21055 1.21323
0.93052 0.91174 1.50211 0.92701 1.19095 0.94022 0.91202 0.97320
1.21572 0.99158 0.93624 1.00168 1.21602 0.98065 0.92841 1.02668
1.22689 0.95326 0.83962 0.99189 1.87934 1.32865 1.12783 1.94713
1.22763 0.93539 0.86607 0.94222 0.91933 1.22990 1.02365 0.95624
0.97884 1.22344 0.98697 0.95767 0.99062 1.23275 0.99479 0.99388
0.97822 1.22187 0.92444 0.92004 0.95485 0.89827 1.58553 1.04593
1.37516 1.35050 0.93107 0.96499 0.96570 0.93500 0.93406 0.91588
0.91927 0.94137 0.93857 0.90419 0.91392 0.91504 0.91399 0.91581
0.91462 0.85437 0.83497
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16
2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16
3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16
4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16
5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16
6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16
8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16
9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16
10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16
11 C -0.11 -2.10 5.58 -26.73 -0.15 -2.25 16
12 C 0.06 1.01 5.78 37.15 0.21 1.22 16
13 O -0.36 -5.40 8.49 -35.23 -0.30 -5.70 16
14 C 0.09 1.02 3.37 -25.51 -0.09 0.94 16
15 H 0.06 0.71 7.80 -51.93 -0.41 0.30 16
16 C -0.15 -1.51 6.59 -24.97 -0.16 -1.68 16
17 C -0.12 -0.97 6.90 -24.74 -0.17 -1.14 16
18 C -0.16 -1.30 6.52 -25.07 -0.16 -1.46 16
19 C 0.09 0.92 4.04 -66.59 -0.27 0.65 16
20 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16
21 N -0.83 -9.06 8.61 -3.72 -0.03 -9.10 16
22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16
29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
30 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16
31 H 0.08 0.86 8.08 -51.93 -0.42 0.45 16
32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16
36 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16
37 H 0.33 2.89 9.06 -39.29 -0.36 2.53 16
38 H 0.35 4.05 8.26 -39.29 -0.32 3.72 16
LS Contribution 307.80 15.07 4.64 4.64
Total: -1.00 -31.12 307.80 -8.41 -39.53
By element:
Atomic # 1 Polarization: 7.07 SS G_CDS: -6.96 Total: 0.11 kcal
Atomic # 6 Polarization: -18.21 SS G_CDS: -1.48 Total: -19.69 kcal
Atomic # 7 Polarization: -36.65 SS G_CDS: 0.70 Total: -35.95 kcal
Atomic # 8 Polarization: -5.40 SS G_CDS: -0.30 Total: -5.70 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -31.12 -8.41 -39.53 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385230201.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.250 kcal
(2) G-P(sol) polarization free energy of solvation -31.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.374 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.785 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds