Wall clock time and date at job start Mon Mar 30 2020 03:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00228 * 2 1 4 4 H 1.48506 * 109.46891 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47091 * 299.99614 * 3 2 1 6 6 H 1.48499 * 109.47362 * 60.00016 * 3 2 1 7 7 C 1.37882 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99702 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00480 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47429 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47276 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47111 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.46936 * 180.02562 * 12 11 10 14 14 C 1.42906 * 113.99948 * 180.02562 * 13 12 11 15 15 H 1.08995 * 110.01442 * 331.39332 * 14 13 12 16 16 C 1.54463 * 110.12156 * 92.67602 * 14 13 12 17 17 C 1.54890 * 104.10368 * 142.72764 * 16 14 13 18 18 C 1.54887 * 102.91108 * 322.30112 * 17 16 14 19 19 C 1.53877 * 110.03186 * 210.00040 * 14 13 12 20 20 H 1.08997 * 110.07404 * 121.41021 * 19 14 13 21 21 N 1.46899 * 110.03055 * 0.02562 * 19 14 13 22 22 H 0.96992 * 119.99901 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47161 * 59.99424 * 9 7 2 24 24 H 1.09002 * 109.46541 * 299.99507 * 9 7 2 25 25 H 1.09001 * 109.47003 * 59.99388 * 10 9 7 26 26 H 1.09001 * 109.46844 * 299.99928 * 10 9 7 27 27 H 1.09000 * 109.46476 * 60.00122 * 11 10 9 28 28 H 1.08993 * 109.46918 * 300.00109 * 11 10 9 29 29 H 1.09000 * 109.47064 * 60.00833 * 12 11 10 30 30 H 1.08993 * 109.47606 * 300.00039 * 12 11 10 31 31 H 1.09003 * 110.40626 * 24.13789 * 16 14 13 32 32 H 1.09003 * 110.65885 * 261.44014 * 16 14 13 33 33 H 1.09002 * 110.75897 * 203.89231 * 17 16 14 34 34 H 1.09006 * 110.75292 * 80.70460 * 17 16 14 35 35 H 1.09004 * 110.48468 * 156.53190 * 18 17 16 36 36 H 1.09006 * 110.48476 * 279.16949 * 18 17 16 37 37 H 1.00901 * 110.99772 * 181.38288 * 21 19 14 38 38 H 1.00896 * 111.00076 * 305.32848 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4993 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4743 -6.1501 0.0005 13 8 1.7597 -7.3876 0.0005 14 6 2.5997 -8.5438 0.0005 15 1 3.5463 -8.3171 -0.4898 16 6 2.8572 -9.0135 1.4493 17 6 2.8602 -10.5592 1.3501 18 6 1.7465 -10.8414 0.3112 19 6 1.8966 -9.7061 -0.7223 20 1 2.5017 -10.0444 -1.5633 21 7 0.5736 -9.2775 -1.1956 22 1 -0.4849 0.8400 -0.0004 23 1 0.6246 -2.5572 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8719 -3.6044 0.8905 26 1 2.8718 -3.6045 -0.8895 27 1 0.8532 -5.0451 -0.8886 28 1 0.8538 -5.0446 0.8913 29 1 3.1015 -6.0924 0.8901 30 1 3.1003 -6.0925 -0.8898 31 1 2.0563 -8.6749 2.1067 32 1 3.8222 -8.6522 1.8049 33 1 2.6139 -11.0086 2.3121 34 1 3.8237 -10.9214 0.9914 35 1 1.9028 -11.8110 -0.1617 36 1 0.7649 -10.8001 0.7835 37 1 0.0899 -10.0360 -1.6526 38 1 0.0228 -8.9019 -0.4383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385230201.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:41 Heat of formation + Delta-G solvation = -78.784541 kcal Electronic energy + Delta-G solvation = -15589.470607 eV Core-core repulsion = 13044.485046 eV Total energy + Delta-G solvation = -2544.985561 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.30611 -36.50730 -34.33843 -32.63924 -32.21884 -28.93495 -27.59893 -26.32787 -24.57147 -21.67651 -21.05619 -20.29354 -19.68545 -17.08476 -16.33869 -16.08059 -15.57803 -14.80235 -14.65757 -14.39856 -13.85567 -13.46642 -13.31301 -12.80271 -12.40813 -12.06640 -11.75119 -11.48823 -11.34845 -11.20172 -11.03805 -10.96207 -10.72494 -10.56992 -10.45273 -10.31081 -9.60715 -9.26020 -9.24127 -8.97861 -8.62069 -8.29698 -5.94598 -3.96713 3.34274 3.41368 3.45707 3.76667 4.31786 4.35721 4.50400 4.60337 4.85301 5.11077 5.18206 5.25629 5.35176 5.40834 5.42368 5.50608 5.58884 5.68125 5.70790 5.83662 5.89367 5.96328 6.05033 6.21133 6.28608 6.57161 6.87331 7.00053 7.06688 7.19545 7.48386 7.57719 7.75110 7.90726 8.06801 8.49176 9.10959 9.66928 11.16867 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.065606 B = 0.003791 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.689982 B = 7383.687706 C = 7601.311010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.114 4.114 12 C 0.065 3.935 13 O -0.365 6.365 14 C 0.088 3.912 15 H 0.063 0.937 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.160 4.160 19 C 0.091 3.909 20 H 0.084 0.916 21 N -0.828 5.828 22 H 0.259 0.741 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.333 0.667 38 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 -21.689 1.120 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.152 4.152 12 C -0.012 4.012 13 O -0.283 6.283 14 C 0.029 3.971 15 H 0.081 0.919 16 C -0.189 4.189 17 C -0.159 4.159 18 C -0.200 4.200 19 C -0.021 4.021 20 H 0.102 0.898 21 N -0.357 5.357 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.146 0.854 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.779 -21.036 0.646 21.581 hybrid contribution 0.416 0.217 0.717 0.857 sum 5.194 -20.819 1.364 21.500 Atomic orbital electron populations 1.69981 1.06041 1.26397 1.51099 1.25041 0.94851 0.99243 0.95456 0.86548 0.80103 0.83878 0.77538 1.19775 1.21031 1.21055 1.21323 0.93052 0.91174 1.50211 0.92701 1.19095 0.94022 0.91202 0.97320 1.21572 0.99158 0.93624 1.00168 1.21602 0.98065 0.92841 1.02668 1.22689 0.95326 0.83962 0.99189 1.87934 1.32865 1.12783 1.94713 1.22763 0.93539 0.86607 0.94222 0.91933 1.22990 1.02365 0.95624 0.97884 1.22344 0.98697 0.95767 0.99062 1.23275 0.99479 0.99388 0.97822 1.22187 0.92444 0.92004 0.95485 0.89827 1.58553 1.04593 1.37516 1.35050 0.93107 0.96499 0.96570 0.93500 0.93406 0.91588 0.91927 0.94137 0.93857 0.90419 0.91392 0.91504 0.91399 0.91581 0.91462 0.85437 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.11 -2.10 5.58 -26.73 -0.15 -2.25 16 12 C 0.06 1.01 5.78 37.15 0.21 1.22 16 13 O -0.36 -5.40 8.49 -35.23 -0.30 -5.70 16 14 C 0.09 1.02 3.37 -25.51 -0.09 0.94 16 15 H 0.06 0.71 7.80 -51.93 -0.41 0.30 16 16 C -0.15 -1.51 6.59 -24.97 -0.16 -1.68 16 17 C -0.12 -0.97 6.90 -24.74 -0.17 -1.14 16 18 C -0.16 -1.30 6.52 -25.07 -0.16 -1.46 16 19 C 0.09 0.92 4.04 -66.59 -0.27 0.65 16 20 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 21 N -0.83 -9.06 8.61 -3.72 -0.03 -9.10 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.08 0.86 8.08 -51.93 -0.42 0.45 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 37 H 0.33 2.89 9.06 -39.29 -0.36 2.53 16 38 H 0.35 4.05 8.26 -39.29 -0.32 3.72 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -31.12 307.80 -8.41 -39.53 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.96 Total: 0.11 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -1.48 Total: -19.69 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.70 Total: -35.95 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.30 Total: -5.70 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.12 -8.41 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385230201.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.250 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds