Wall clock time and date at job start Mon Mar 30 2020 03:24:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86795 * 120.00228 * 2 1
4 4 H 1.48506 * 109.46891 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47091 * 299.99614 * 3 2 1
6 6 H 1.48499 * 109.47362 * 60.00016 * 3 2 1
7 7 C 1.37882 * 119.99550 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99702 * 180.02562 * 7 2 1
9 9 C 1.50700 * 120.00480 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.47429 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.47276 * 179.97438 * 10 9 7
12 12 C 1.52995 * 109.47111 * 179.97438 * 11 10 9
13 13 O 1.42899 * 109.46936 * 180.02562 * 12 11 10
14 14 C 1.42906 * 113.99948 * 180.02562 * 13 12 11
15 15 H 1.08995 * 110.01442 * 331.39332 * 14 13 12
16 16 C 1.54463 * 110.12156 * 92.67602 * 14 13 12
17 17 C 1.54890 * 104.10368 * 142.72764 * 16 14 13
18 18 C 1.54887 * 102.91108 * 322.30112 * 17 16 14
19 19 C 1.53877 * 110.03186 * 210.00040 * 14 13 12
20 20 H 1.08997 * 110.07404 * 121.41021 * 19 14 13
21 21 N 1.46899 * 110.03055 * 0.02562 * 19 14 13
22 22 H 0.96992 * 119.99901 * 0.02562 * 1 2 3
23 23 H 1.08995 * 109.47161 * 59.99424 * 9 7 2
24 24 H 1.09002 * 109.46541 * 299.99507 * 9 7 2
25 25 H 1.09001 * 109.47003 * 59.99388 * 10 9 7
26 26 H 1.09001 * 109.46844 * 299.99928 * 10 9 7
27 27 H 1.09000 * 109.46476 * 60.00122 * 11 10 9
28 28 H 1.08993 * 109.46918 * 300.00109 * 11 10 9
29 29 H 1.09000 * 109.47064 * 60.00833 * 12 11 10
30 30 H 1.08993 * 109.47606 * 300.00039 * 12 11 10
31 31 H 1.09003 * 110.40626 * 24.13789 * 16 14 13
32 32 H 1.09003 * 110.65885 * 261.44014 * 16 14 13
33 33 H 1.09002 * 110.75897 * 203.89231 * 17 16 14
34 34 H 1.09006 * 110.75292 * 80.70460 * 17 16 14
35 35 H 1.09004 * 110.48468 * 156.53190 * 18 17 16
36 36 H 1.09006 * 110.48476 * 279.16949 * 18 17 16
37 37 H 1.00901 * 110.99772 * 181.38288 * 21 19 14
38 38 H 1.00896 * 111.00076 * 305.32848 * 21 19 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3462 0.0006
5 1 1.8906 2.3963 -1.2125
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1942 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2510 -2.4993 0.0005
10 6 2.2451 -3.6622 0.0005
11 6 1.4801 -4.9872 0.0012
12 6 2.4743 -6.1501 0.0005
13 8 1.7597 -7.3876 0.0005
14 6 2.5997 -8.5438 0.0005
15 1 3.5463 -8.3171 -0.4898
16 6 2.8572 -9.0135 1.4493
17 6 2.8602 -10.5592 1.3501
18 6 1.7465 -10.8414 0.3112
19 6 1.8966 -9.7061 -0.7223
20 1 2.5017 -10.0444 -1.5633
21 7 0.5736 -9.2775 -1.1956
22 1 -0.4849 0.8400 -0.0004
23 1 0.6246 -2.5572 -0.8896
24 1 0.6241 -2.5567 0.8904
25 1 2.8719 -3.6044 0.8905
26 1 2.8718 -3.6045 -0.8895
27 1 0.8532 -5.0451 -0.8886
28 1 0.8538 -5.0446 0.8913
29 1 3.1015 -6.0924 0.8901
30 1 3.1003 -6.0925 -0.8898
31 1 2.0563 -8.6749 2.1067
32 1 3.8222 -8.6522 1.8049
33 1 2.6139 -11.0086 2.3121
34 1 3.8237 -10.9214 0.9914
35 1 1.9028 -11.8110 -0.1617
36 1 0.7649 -10.8001 0.7835
37 1 0.0899 -10.0360 -1.6526
38 1 0.0228 -8.9019 -0.4383
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385230201.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:41
Heat of formation + Delta-G solvation = -98.828007 kcal
Electronic energy + Delta-G solvation = -15590.339757 eV
Core-core repulsion = 13044.485046 eV
Total energy + Delta-G solvation = -2545.854711 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.20182 -37.64364 -36.12109 -34.21706 -33.41848 -30.62416 -28.58121 -27.22437
-26.36431 -23.39341 -21.86138 -21.75169 -20.76227 -18.45733 -17.96956 -17.16014
-16.84231 -16.51695 -15.80524 -15.41348 -15.10271 -14.72760 -14.40165 -14.16743
-13.81249 -13.60195 -13.20458 -12.94547 -12.73910 -12.47133 -12.28836 -12.12173
-12.03740 -11.97100 -11.72346 -11.50310 -11.41714 -11.31070 -11.05099 -10.55817
-10.32018 -9.41730 -8.19474 -6.31169 1.40402 1.41152 1.54698 2.41257
2.71817 3.13320 3.57268 3.61892 3.83768 4.09430 4.14526 4.21307
4.30237 4.45752 4.48527 4.50104 4.62433 4.63434 4.72052 4.76329
4.92141 4.96948 5.08384 5.11931 5.17705 5.22388 5.27618 5.32182
5.37517 5.54090 5.76207 5.86365 6.21417 6.25311 6.54981 6.70835
6.86377 7.38172 8.92899
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.065606 B = 0.003791 C = 0.003683
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 426.689982 B = 7383.687706 C = 7601.311010
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.004 4.004
3 Si 0.969 3.031
4 H -0.260 1.260
5 H -0.278 1.278
6 H -0.277 1.277
7 C -0.544 4.544
8 H 0.062 0.938
9 C 0.022 3.978
10 C -0.094 4.094
11 C -0.105 4.105
12 C 0.075 3.925
13 O -0.380 6.380
14 C 0.077 3.923
15 H 0.067 0.933
16 C -0.149 4.149
17 C -0.115 4.115
18 C -0.152 4.152
19 C 0.089 3.911
20 H 0.090 0.910
21 N -0.843 5.843
22 H 0.264 0.736
23 H -0.011 1.011
24 H -0.010 1.010
25 H 0.055 0.945
26 H 0.054 0.946
27 H 0.053 0.947
28 H 0.055 0.945
29 H 0.052 0.948
30 H 0.049 0.951
31 H 0.063 0.937
32 H 0.073 0.927
33 H 0.075 0.925
34 H 0.081 0.919
35 H 0.082 0.918
36 H 0.063 0.937
37 H 0.345 0.655
38 H 0.345 0.655
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.417 -22.478 1.235 23.409
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.202 4.202
3 Si 0.793 3.207
4 H -0.184 1.184
5 H -0.203 1.203
6 H -0.203 1.203
7 C -0.582 4.582
8 H 0.080 0.920
9 C -0.015 4.015
10 C -0.132 4.132
11 C -0.143 4.143
12 C -0.002 4.002
13 O -0.299 6.299
14 C 0.018 3.982
15 H 0.085 0.915
16 C -0.187 4.187
17 C -0.153 4.153
18 C -0.192 4.192
19 C -0.023 4.023
20 H 0.108 0.892
21 N -0.373 5.373
22 H 0.072 0.928
23 H 0.008 0.992
24 H 0.009 0.991
25 H 0.074 0.926
26 H 0.072 0.928
27 H 0.072 0.928
28 H 0.074 0.926
29 H 0.070 0.930
30 H 0.068 0.932
31 H 0.081 0.919
32 H 0.092 0.908
33 H 0.094 0.906
34 H 0.099 0.901
35 H 0.101 0.899
36 H 0.082 0.918
37 H 0.158 0.842
38 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 6.471 -21.855 0.757 22.805
hybrid contribution -0.153 0.422 0.668 0.805
sum 6.318 -21.433 1.425 22.390
Atomic orbital electron populations
1.70119 1.07913 1.27738 1.51777 1.26052 0.95820 1.03584 0.94717
0.85344 0.79070 0.78489 0.77803 1.18429 1.20330 1.20298 1.21762
0.93631 0.92371 1.50411 0.92000 1.19026 0.94519 0.93256 0.94734
1.21355 0.98026 0.92983 1.00831 1.21407 0.98236 0.92917 1.01758
1.22441 0.94207 0.83495 1.00045 1.87901 1.33846 1.13226 1.94947
1.23069 0.93559 0.85915 0.95644 0.91527 1.22955 1.02064 0.97256
0.96442 1.22350 0.99338 0.94059 0.99581 1.23200 0.99381 0.99330
0.97267 1.22248 0.91911 0.91967 0.96150 0.89153 1.58555 1.05125
1.38482 1.35140 0.92762 0.99223 0.99123 0.92610 0.92760 0.92786
0.92622 0.92971 0.93235 0.91851 0.90830 0.90610 0.90077 0.89892
0.91846 0.84169 0.84155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.55 13.29 21.45 0.28 -58.27 16
2 C 0.00 -0.26 5.46 84.66 0.46 0.21 16
3 Si 0.97 45.13 29.54 68.60 2.03 47.15 16
4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16
5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16
6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
7 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16
8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16
9 C 0.02 1.20 4.97 29.85 0.15 1.35 16
10 C -0.09 -4.04 5.15 30.59 0.16 -3.88 16
11 C -0.11 -3.91 5.58 30.59 0.17 -3.74 16
12 C 0.07 2.25 5.78 71.98 0.42 2.66 16
13 O -0.38 -11.00 8.49 -148.98 -1.26 -12.27 16
14 C 0.08 1.68 3.37 31.39 0.11 1.79 16
15 H 0.07 1.39 7.80 -2.39 -0.02 1.37 16
16 C -0.15 -2.76 6.59 31.74 0.21 -2.55 16
17 C -0.12 -1.57 6.90 31.88 0.22 -1.35 16
18 C -0.15 -2.13 6.52 31.67 0.21 -1.93 16
19 C 0.09 1.66 4.04 45.64 0.18 1.84 16
20 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
21 N -0.84 -17.77 8.61 -165.68 -1.43 -19.19 16
22 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
23 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16
24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16
26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16
27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16
28 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16
29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
30 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16
31 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16
32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16
34 H 0.08 0.91 8.14 -2.38 -0.02 0.90 16
35 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16
36 H 0.06 0.95 8.04 -2.38 -0.02 0.93 16
37 H 0.34 5.63 9.06 -89.69 -0.81 4.82 16
38 H 0.34 7.88 8.26 -89.70 -0.74 7.14 16
Total: -1.00 -66.66 307.80 1.60 -65.06
By element:
Atomic # 1 Polarization: 15.39 SS G_CDS: -0.54 Total: 14.86 kcal
Atomic # 6 Polarization: -39.85 SS G_CDS: 2.51 Total: -37.33 kcal
Atomic # 7 Polarization: -76.32 SS G_CDS: -1.14 Total: -77.46 kcal
Atomic # 8 Polarization: -11.00 SS G_CDS: -1.26 Total: -12.27 kcal
Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal
Total: -66.66 1.60 -65.06 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385230201.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.771 kcal
(2) G-P(sol) polarization free energy of solvation -66.655 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.426 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds