Wall clock time and date at job start Mon Mar 30 2020 03:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00228 * 2 1 4 4 H 1.48506 * 109.46891 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47091 * 299.99614 * 3 2 1 6 6 H 1.48499 * 109.47362 * 60.00016 * 3 2 1 7 7 C 1.37882 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99702 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00480 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47429 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47276 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47111 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.46936 * 180.02562 * 12 11 10 14 14 C 1.42906 * 113.99948 * 180.02562 * 13 12 11 15 15 H 1.08995 * 110.01442 * 331.39332 * 14 13 12 16 16 C 1.54463 * 110.12156 * 92.67602 * 14 13 12 17 17 C 1.54890 * 104.10368 * 142.72764 * 16 14 13 18 18 C 1.54887 * 102.91108 * 322.30112 * 17 16 14 19 19 C 1.53877 * 110.03186 * 210.00040 * 14 13 12 20 20 H 1.08997 * 110.07404 * 121.41021 * 19 14 13 21 21 N 1.46899 * 110.03055 * 0.02562 * 19 14 13 22 22 H 0.96992 * 119.99901 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47161 * 59.99424 * 9 7 2 24 24 H 1.09002 * 109.46541 * 299.99507 * 9 7 2 25 25 H 1.09001 * 109.47003 * 59.99388 * 10 9 7 26 26 H 1.09001 * 109.46844 * 299.99928 * 10 9 7 27 27 H 1.09000 * 109.46476 * 60.00122 * 11 10 9 28 28 H 1.08993 * 109.46918 * 300.00109 * 11 10 9 29 29 H 1.09000 * 109.47064 * 60.00833 * 12 11 10 30 30 H 1.08993 * 109.47606 * 300.00039 * 12 11 10 31 31 H 1.09003 * 110.40626 * 24.13789 * 16 14 13 32 32 H 1.09003 * 110.65885 * 261.44014 * 16 14 13 33 33 H 1.09002 * 110.75897 * 203.89231 * 17 16 14 34 34 H 1.09006 * 110.75292 * 80.70460 * 17 16 14 35 35 H 1.09004 * 110.48468 * 156.53190 * 18 17 16 36 36 H 1.09006 * 110.48476 * 279.16949 * 18 17 16 37 37 H 1.00901 * 110.99772 * 181.38288 * 21 19 14 38 38 H 1.00896 * 111.00076 * 305.32848 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4993 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4743 -6.1501 0.0005 13 8 1.7597 -7.3876 0.0005 14 6 2.5997 -8.5438 0.0005 15 1 3.5463 -8.3171 -0.4898 16 6 2.8572 -9.0135 1.4493 17 6 2.8602 -10.5592 1.3501 18 6 1.7465 -10.8414 0.3112 19 6 1.8966 -9.7061 -0.7223 20 1 2.5017 -10.0444 -1.5633 21 7 0.5736 -9.2775 -1.1956 22 1 -0.4849 0.8400 -0.0004 23 1 0.6246 -2.5572 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8719 -3.6044 0.8905 26 1 2.8718 -3.6045 -0.8895 27 1 0.8532 -5.0451 -0.8886 28 1 0.8538 -5.0446 0.8913 29 1 3.1015 -6.0924 0.8901 30 1 3.1003 -6.0925 -0.8898 31 1 2.0563 -8.6749 2.1067 32 1 3.8222 -8.6522 1.8049 33 1 2.6139 -11.0086 2.3121 34 1 3.8237 -10.9214 0.9914 35 1 1.9028 -11.8110 -0.1617 36 1 0.7649 -10.8001 0.7835 37 1 0.0899 -10.0360 -1.6526 38 1 0.0228 -8.9019 -0.4383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385230201.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:41 Heat of formation + Delta-G solvation = -98.828007 kcal Electronic energy + Delta-G solvation = -15590.339757 eV Core-core repulsion = 13044.485046 eV Total energy + Delta-G solvation = -2545.854711 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20182 -37.64364 -36.12109 -34.21706 -33.41848 -30.62416 -28.58121 -27.22437 -26.36431 -23.39341 -21.86138 -21.75169 -20.76227 -18.45733 -17.96956 -17.16014 -16.84231 -16.51695 -15.80524 -15.41348 -15.10271 -14.72760 -14.40165 -14.16743 -13.81249 -13.60195 -13.20458 -12.94547 -12.73910 -12.47133 -12.28836 -12.12173 -12.03740 -11.97100 -11.72346 -11.50310 -11.41714 -11.31070 -11.05099 -10.55817 -10.32018 -9.41730 -8.19474 -6.31169 1.40402 1.41152 1.54698 2.41257 2.71817 3.13320 3.57268 3.61892 3.83768 4.09430 4.14526 4.21307 4.30237 4.45752 4.48527 4.50104 4.62433 4.63434 4.72052 4.76329 4.92141 4.96948 5.08384 5.11931 5.17705 5.22388 5.27618 5.32182 5.37517 5.54090 5.76207 5.86365 6.21417 6.25311 6.54981 6.70835 6.86377 7.38172 8.92899 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.065606 B = 0.003791 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.689982 B = 7383.687706 C = 7601.311010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.105 4.105 12 C 0.075 3.925 13 O -0.380 6.380 14 C 0.077 3.923 15 H 0.067 0.933 16 C -0.149 4.149 17 C -0.115 4.115 18 C -0.152 4.152 19 C 0.089 3.911 20 H 0.090 0.910 21 N -0.843 5.843 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.010 1.010 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.345 0.655 38 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -22.478 1.235 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.143 4.143 12 C -0.002 4.002 13 O -0.299 6.299 14 C 0.018 3.982 15 H 0.085 0.915 16 C -0.187 4.187 17 C -0.153 4.153 18 C -0.192 4.192 19 C -0.023 4.023 20 H 0.108 0.892 21 N -0.373 5.373 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.158 0.842 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.471 -21.855 0.757 22.805 hybrid contribution -0.153 0.422 0.668 0.805 sum 6.318 -21.433 1.425 22.390 Atomic orbital electron populations 1.70119 1.07913 1.27738 1.51777 1.26052 0.95820 1.03584 0.94717 0.85344 0.79070 0.78489 0.77803 1.18429 1.20330 1.20298 1.21762 0.93631 0.92371 1.50411 0.92000 1.19026 0.94519 0.93256 0.94734 1.21355 0.98026 0.92983 1.00831 1.21407 0.98236 0.92917 1.01758 1.22441 0.94207 0.83495 1.00045 1.87901 1.33846 1.13226 1.94947 1.23069 0.93559 0.85915 0.95644 0.91527 1.22955 1.02064 0.97256 0.96442 1.22350 0.99338 0.94059 0.99581 1.23200 0.99381 0.99330 0.97267 1.22248 0.91911 0.91967 0.96150 0.89153 1.58555 1.05125 1.38482 1.35140 0.92762 0.99223 0.99123 0.92610 0.92760 0.92786 0.92622 0.92971 0.93235 0.91851 0.90830 0.90610 0.90077 0.89892 0.91846 0.84169 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.55 13.29 21.45 0.28 -58.27 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -4.04 5.15 30.59 0.16 -3.88 16 11 C -0.11 -3.91 5.58 30.59 0.17 -3.74 16 12 C 0.07 2.25 5.78 71.98 0.42 2.66 16 13 O -0.38 -11.00 8.49 -148.98 -1.26 -12.27 16 14 C 0.08 1.68 3.37 31.39 0.11 1.79 16 15 H 0.07 1.39 7.80 -2.39 -0.02 1.37 16 16 C -0.15 -2.76 6.59 31.74 0.21 -2.55 16 17 C -0.12 -1.57 6.90 31.88 0.22 -1.35 16 18 C -0.15 -2.13 6.52 31.67 0.21 -1.93 16 19 C 0.09 1.66 4.04 45.64 0.18 1.84 16 20 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 21 N -0.84 -17.77 8.61 -165.68 -1.43 -19.19 16 22 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 23 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 31 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.91 8.14 -2.38 -0.02 0.90 16 35 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.06 0.95 8.04 -2.38 -0.02 0.93 16 37 H 0.34 5.63 9.06 -89.69 -0.81 4.82 16 38 H 0.34 7.88 8.26 -89.70 -0.74 7.14 16 Total: -1.00 -66.66 307.80 1.60 -65.06 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -0.54 Total: 14.86 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 2.51 Total: -37.33 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.14 Total: -77.46 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.26 Total: -12.27 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.66 1.60 -65.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385230201.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.771 kcal (2) G-P(sol) polarization free energy of solvation -66.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds