Wall clock time and date at job start Mon Mar 30 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00084 * 2 1 4 4 H 1.48498 * 109.46981 * 269.99633 * 3 2 1 5 5 H 1.48501 * 109.46924 * 29.99390 * 3 2 1 6 6 H 1.48495 * 109.46919 * 149.99608 * 3 2 1 7 7 C 1.37881 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99943 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47062 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47062 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47228 * 179.97438 * 12 11 10 14 14 C 1.42898 * 113.99913 * 179.97438 * 13 12 11 15 15 H 1.09002 * 110.43427 * 29.30136 * 14 13 12 16 16 C 1.54891 * 110.48728 * 266.75846 * 14 13 12 17 17 C 1.54892 * 102.74959 * 203.24962 * 16 14 13 18 18 C 1.54264 * 104.19651 * 37.93955 * 17 16 14 19 19 C 1.54224 * 106.63737 * 336.40572 * 18 17 16 20 20 H 1.08998 * 110.14251 * 240.73074 * 19 18 17 21 21 N 1.46905 * 110.08680 * 119.19219 * 19 18 17 22 22 H 0.97002 * 120.00294 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47031 * 59.99895 * 9 7 2 24 24 H 1.08995 * 109.47651 * 299.99891 * 9 7 2 25 25 H 1.08999 * 109.47126 * 59.99722 * 10 9 7 26 26 H 1.09006 * 109.47131 * 299.99829 * 10 9 7 27 27 H 1.09004 * 109.47159 * 60.00137 * 11 10 9 28 28 H 1.08996 * 109.46808 * 299.99977 * 11 10 9 29 29 H 1.08999 * 109.47126 * 59.99572 * 12 11 10 30 30 H 1.09004 * 109.46890 * 300.00421 * 12 11 10 31 31 H 1.09000 * 110.75322 * 321.56237 * 16 14 13 32 32 H 1.09002 * 110.75658 * 84.93436 * 16 14 13 33 33 H 1.08993 * 110.48715 * 156.62375 * 17 16 14 34 34 H 1.09001 * 110.48596 * 279.13315 * 17 16 14 35 35 H 1.09009 * 110.02966 * 95.67570 * 18 17 16 36 36 H 1.08998 * 110.03852 * 217.06147 * 18 17 16 37 37 H 1.00903 * 111.00132 * 63.00811 * 21 19 18 38 38 H 1.00897 * 111.00070 * 186.96327 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 -0.0001 12 6 2.4744 -6.1501 0.0005 13 8 1.7599 -7.3876 0.0005 14 6 2.5999 -8.5437 0.0005 15 1 3.5442 -8.3280 0.5004 16 6 2.8522 -9.0305 -1.4481 17 6 3.2127 -10.5237 -1.2490 18 6 2.2778 -10.9905 -0.1142 19 6 1.8865 -9.7293 0.6825 20 1 2.2189 -9.8204 1.7166 21 7 0.4311 -9.5349 0.6364 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5568 0.8902 25 1 2.8719 -3.6044 0.8905 26 1 2.8719 -3.6044 -0.8895 27 1 0.8538 -5.0446 -0.8904 28 1 0.8533 -5.0451 0.8896 29 1 3.1005 -6.0924 0.8909 30 1 3.1018 -6.0922 -0.8890 31 1 1.9509 -8.9280 -2.0525 32 1 3.6841 -8.4889 -1.8982 33 1 3.0174 -11.0881 -2.1608 34 1 4.2566 -10.6279 -0.9532 35 1 1.3868 -11.4584 -0.5331 36 1 2.7996 -11.6950 0.5335 37 1 -0.0506 -10.3031 1.0791 38 1 0.1704 -8.6550 1.0557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385230203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:45 Heat of formation + Delta-G solvation = -80.074470 kcal Electronic energy + Delta-G solvation = -15557.698038 eV Core-core repulsion = 13012.656542 eV Total energy + Delta-G solvation = -2545.041496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.21484 -36.53499 -34.37950 -32.60732 -32.24821 -28.96423 -27.62810 -26.42540 -24.59228 -21.71715 -20.91015 -20.25128 -19.63959 -16.93547 -16.26207 -15.93559 -15.60161 -15.37758 -14.64228 -14.37709 -14.15146 -13.55787 -13.17149 -12.60647 -12.24174 -11.88854 -11.72676 -11.61225 -11.29472 -11.16207 -11.00980 -10.94243 -10.65728 -10.61147 -10.48694 -10.34952 -9.64249 -9.35515 -9.27948 -9.01661 -8.64224 -8.31345 -5.96375 -3.98770 3.33895 3.39826 3.43211 3.73064 4.36514 4.38539 4.48795 4.62585 4.90895 5.10683 5.23592 5.26321 5.38450 5.39872 5.49543 5.52133 5.66217 5.72732 5.77850 5.83950 5.84406 6.02988 6.16030 6.16829 6.26916 6.52210 6.82429 6.95857 7.05892 7.16531 7.46056 7.54063 7.72329 7.87733 8.04511 8.46770 9.08601 9.64943 11.14992 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.067600 B = 0.003747 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.103577 B = 7471.521546 C = 7705.753332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.115 4.115 12 C 0.062 3.938 13 O -0.369 6.369 14 C 0.088 3.912 15 H 0.063 0.937 16 C -0.140 4.140 17 C -0.121 4.121 18 C -0.119 4.119 19 C 0.090 3.910 20 H 0.036 0.964 21 N -0.832 5.832 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.333 0.667 38 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 -20.986 0.639 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.152 4.152 12 C -0.015 4.015 13 O -0.288 6.288 14 C 0.029 3.971 15 H 0.081 0.919 16 C -0.178 4.178 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.022 4.022 20 H 0.054 0.946 21 N -0.364 5.364 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.145 0.855 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.156 -20.882 -0.139 21.509 hybrid contribution 0.830 1.000 1.059 1.677 sum 5.986 -19.882 0.920 20.784 Atomic orbital electron populations 1.69972 1.06044 1.26541 1.50938 1.25039 0.94855 0.99245 0.95414 0.86598 0.79824 0.83522 0.78079 1.20676 1.21237 1.19916 1.21278 0.93013 0.91176 1.50442 0.92751 1.19090 0.93999 0.91180 0.97327 1.21578 0.99173 0.93580 1.00206 1.21618 0.98046 0.92863 1.02708 1.22735 0.95401 0.83958 0.99381 1.87925 1.33121 1.12961 1.94796 1.22997 0.92730 0.85898 0.95508 0.91935 1.22923 1.02045 0.95315 0.97496 1.22204 0.98887 0.96207 0.98541 1.22285 0.99920 0.96344 0.97130 1.22060 0.89487 0.94185 0.96475 0.94598 1.58604 1.04933 1.07813 1.65080 0.93027 0.96517 0.96551 0.93454 0.93390 0.91632 0.91836 0.93994 0.93760 0.89943 0.91787 0.91388 0.91811 0.90512 0.91990 0.85470 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 11 C -0.11 -2.07 5.58 -26.73 -0.15 -2.22 16 12 C 0.06 0.93 5.79 37.16 0.22 1.15 16 13 O -0.37 -5.44 8.61 -35.23 -0.30 -5.74 16 14 C 0.09 1.04 3.25 -25.07 -0.08 0.96 16 15 H 0.06 0.69 7.84 -51.93 -0.41 0.29 16 16 C -0.14 -1.54 6.62 -24.74 -0.16 -1.70 16 17 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 18 C -0.12 -1.03 6.60 -25.43 -0.17 -1.20 16 19 C 0.09 0.94 4.03 -66.41 -0.27 0.67 16 20 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 21 N -0.83 -9.05 8.87 -3.56 -0.03 -9.08 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.69 7.92 -51.92 -0.41 0.28 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.33 2.87 9.07 -39.29 -0.36 2.51 16 38 H 0.35 4.19 7.97 -39.29 -0.31 3.87 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -30.80 307.83 -8.40 -39.20 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.95 Total: 0.19 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -1.47 Total: -19.42 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.70 Total: -35.79 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.30 Total: -5.74 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.80 -8.40 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385230203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.876 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds