Wall clock time and date at job start Mon Mar 30 2020 03:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00084 * 2 1 4 4 H 1.48498 * 109.46981 * 269.99633 * 3 2 1 5 5 H 1.48501 * 109.46924 * 29.99390 * 3 2 1 6 6 H 1.48495 * 109.46919 * 149.99608 * 3 2 1 7 7 C 1.37881 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99943 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47062 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47062 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47228 * 179.97438 * 12 11 10 14 14 C 1.42898 * 113.99913 * 179.97438 * 13 12 11 15 15 H 1.09002 * 110.43427 * 29.30136 * 14 13 12 16 16 C 1.54891 * 110.48728 * 266.75846 * 14 13 12 17 17 C 1.54892 * 102.74959 * 203.24962 * 16 14 13 18 18 C 1.54264 * 104.19651 * 37.93955 * 17 16 14 19 19 C 1.54224 * 106.63737 * 336.40572 * 18 17 16 20 20 H 1.08998 * 110.14251 * 240.73074 * 19 18 17 21 21 N 1.46905 * 110.08680 * 119.19219 * 19 18 17 22 22 H 0.97002 * 120.00294 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47031 * 59.99895 * 9 7 2 24 24 H 1.08995 * 109.47651 * 299.99891 * 9 7 2 25 25 H 1.08999 * 109.47126 * 59.99722 * 10 9 7 26 26 H 1.09006 * 109.47131 * 299.99829 * 10 9 7 27 27 H 1.09004 * 109.47159 * 60.00137 * 11 10 9 28 28 H 1.08996 * 109.46808 * 299.99977 * 11 10 9 29 29 H 1.08999 * 109.47126 * 59.99572 * 12 11 10 30 30 H 1.09004 * 109.46890 * 300.00421 * 12 11 10 31 31 H 1.09000 * 110.75322 * 321.56237 * 16 14 13 32 32 H 1.09002 * 110.75658 * 84.93436 * 16 14 13 33 33 H 1.08993 * 110.48715 * 156.62375 * 17 16 14 34 34 H 1.09001 * 110.48596 * 279.13315 * 17 16 14 35 35 H 1.09009 * 110.02966 * 95.67570 * 18 17 16 36 36 H 1.08998 * 110.03852 * 217.06147 * 18 17 16 37 37 H 1.00903 * 111.00132 * 63.00811 * 21 19 18 38 38 H 1.00897 * 111.00070 * 186.96327 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 -0.0001 12 6 2.4744 -6.1501 0.0005 13 8 1.7599 -7.3876 0.0005 14 6 2.5999 -8.5437 0.0005 15 1 3.5442 -8.3280 0.5004 16 6 2.8522 -9.0305 -1.4481 17 6 3.2127 -10.5237 -1.2490 18 6 2.2778 -10.9905 -0.1142 19 6 1.8865 -9.7293 0.6825 20 1 2.2189 -9.8204 1.7166 21 7 0.4311 -9.5349 0.6364 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5568 0.8902 25 1 2.8719 -3.6044 0.8905 26 1 2.8719 -3.6044 -0.8895 27 1 0.8538 -5.0446 -0.8904 28 1 0.8533 -5.0451 0.8896 29 1 3.1005 -6.0924 0.8909 30 1 3.1018 -6.0922 -0.8890 31 1 1.9509 -8.9280 -2.0525 32 1 3.6841 -8.4889 -1.8982 33 1 3.0174 -11.0881 -2.1608 34 1 4.2566 -10.6279 -0.9532 35 1 1.3868 -11.4584 -0.5331 36 1 2.7996 -11.6950 0.5335 37 1 -0.0506 -10.3031 1.0791 38 1 0.1704 -8.6550 1.0557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385230203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:44 Heat of formation + Delta-G solvation = -99.869060 kcal Electronic energy + Delta-G solvation = -15558.556396 eV Core-core repulsion = 13012.656542 eV Total energy + Delta-G solvation = -2545.899854 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.13669 -37.65419 -36.14226 -34.23151 -33.40807 -30.64368 -28.61394 -27.35841 -26.36467 -23.40447 -21.90219 -21.64734 -20.63918 -18.44503 -17.89912 -16.89590 -16.82677 -16.52941 -16.23578 -15.57253 -15.19534 -14.76924 -14.61692 -14.08837 -13.72605 -13.52404 -13.11090 -12.75672 -12.67775 -12.45336 -12.33545 -12.12696 -12.08469 -11.96480 -11.68017 -11.43947 -11.40910 -11.32492 -11.06870 -10.55734 -10.41007 -9.46631 -8.19877 -6.31697 1.40072 1.42033 1.53160 2.40770 2.68205 3.12914 3.58865 3.60299 3.82111 4.07435 4.12117 4.22350 4.30493 4.45604 4.48883 4.50136 4.60694 4.62027 4.75437 4.84449 4.95685 5.01369 5.05527 5.15860 5.17014 5.23044 5.27057 5.30681 5.44367 5.53229 5.75389 5.85737 6.19892 6.24613 6.52757 6.67594 6.85775 7.37693 8.92216 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.067600 B = 0.003747 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.103577 B = 7471.521546 C = 7705.753332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.107 4.107 12 C 0.071 3.929 13 O -0.385 6.385 14 C 0.077 3.923 15 H 0.074 0.926 16 C -0.141 4.141 17 C -0.116 4.116 18 C -0.115 4.115 19 C 0.087 3.913 20 H 0.044 0.956 21 N -0.843 5.843 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.009 1.009 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.345 0.655 38 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 -21.713 0.854 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.144 4.144 12 C -0.005 4.005 13 O -0.304 6.304 14 C 0.019 3.981 15 H 0.092 0.908 16 C -0.179 4.179 17 C -0.153 4.153 18 C -0.153 4.153 19 C -0.025 4.025 20 H 0.062 0.938 21 N -0.376 5.376 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.009 0.991 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.158 0.842 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.055 -21.642 0.075 22.763 hybrid contribution 0.190 1.185 0.989 1.555 sum 7.244 -20.457 1.063 21.728 Atomic orbital electron populations 1.70113 1.07916 1.27808 1.51697 1.26049 0.95811 1.03579 0.94708 0.85400 0.78654 0.78174 0.78534 1.19719 1.20732 1.18555 1.21735 0.93642 0.92381 1.50533 0.91970 1.19024 0.94520 0.93249 0.94740 1.21358 0.98023 0.92924 1.00898 1.21426 0.98241 0.92907 1.01865 1.22501 0.94285 0.83327 1.00386 1.87895 1.34115 1.13441 1.94994 1.23291 0.93114 0.85279 0.96461 0.90782 1.22902 1.01196 0.97203 0.96610 1.22211 0.99759 0.94392 0.98960 1.22279 0.99961 0.95806 0.97204 1.22162 0.89016 0.94245 0.97071 0.93780 1.58621 1.05626 1.07932 1.65388 0.92759 0.99254 0.99097 0.92542 0.92708 0.92813 0.92444 0.92656 0.93002 0.92133 0.91426 0.90672 0.90245 0.90952 0.90014 0.84186 0.84015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.55 -31.79 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.09 -3.96 5.15 30.60 0.16 -3.81 16 11 C -0.11 -3.85 5.58 30.60 0.17 -3.68 16 12 C 0.07 2.08 5.79 71.98 0.42 2.49 16 13 O -0.39 -11.04 8.61 -148.98 -1.28 -12.32 16 14 C 0.08 1.71 3.25 31.67 0.10 1.81 16 15 H 0.07 1.47 7.84 -2.39 -0.02 1.45 16 16 C -0.14 -2.91 6.62 31.89 0.21 -2.70 16 17 C -0.12 -1.74 6.83 31.67 0.22 -1.52 16 18 C -0.11 -1.73 6.60 31.44 0.21 -1.52 16 19 C 0.09 1.66 4.03 45.76 0.18 1.84 16 20 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 21 N -0.84 -17.66 8.87 -165.17 -1.46 -19.12 16 22 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 30 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.17 7.92 -2.38 -0.02 1.15 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.34 5.60 9.07 -89.69 -0.81 4.79 16 38 H 0.35 8.11 7.97 -89.70 -0.72 7.39 16 Total: -1.00 -66.10 307.83 1.56 -64.54 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -0.51 Total: 15.12 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 2.51 Total: -37.07 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -1.18 Total: -77.15 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -1.28 Total: -12.32 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -66.10 1.56 -64.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385230203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.332 kcal (2) G-P(sol) polarization free energy of solvation -66.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds