Wall clock time and date at job start Mon Mar 30 2020 03:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99646 * 2 1 4 4 H 1.48499 * 109.47065 * 239.99649 * 3 2 1 5 5 H 1.48494 * 109.47020 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46662 * 119.99623 * 3 2 1 7 7 C 1.37877 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99514 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46450 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46996 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47362 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.47375 * 179.97438 * 12 11 10 14 14 C 1.42896 * 113.99993 * 180.02562 * 13 12 11 15 15 C 1.53118 * 109.52216 * 150.00467 * 14 13 12 16 16 C 1.53034 * 109.28068 * 177.55794 * 15 14 13 17 17 N 1.46848 * 109.52504 * 300.82023 * 16 15 14 18 18 C 1.46847 * 111.19556 * 61.74015 * 17 16 15 19 19 C 1.53044 * 109.52516 * 298.25761 * 18 17 16 20 20 H 0.97001 * 120.00535 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47191 * 60.00705 * 9 7 2 22 22 H 1.08998 * 109.47417 * 299.99916 * 9 7 2 23 23 H 1.08999 * 109.47167 * 60.00686 * 10 9 7 24 24 H 1.08998 * 109.47436 * 300.00142 * 10 9 7 25 25 H 1.09004 * 109.46965 * 60.00111 * 11 10 9 26 26 H 1.09003 * 109.47542 * 300.00587 * 11 10 9 27 27 H 1.09003 * 109.46464 * 60.00062 * 12 11 10 28 28 H 1.08998 * 109.47266 * 300.00276 * 12 11 10 29 29 H 1.08992 * 109.57379 * 29.84553 * 14 13 12 30 30 H 1.09001 * 109.50624 * 57.61815 * 15 14 13 31 31 H 1.08998 * 109.50047 * 297.50272 * 15 14 13 32 32 H 1.09000 * 109.46341 * 180.80474 * 16 15 14 33 33 H 1.08999 * 109.46274 * 60.83372 * 16 15 14 34 34 H 1.00901 * 111.00066 * 185.83397 * 17 16 15 35 35 H 1.08999 * 109.46628 * 58.27319 * 18 17 16 36 36 H 1.09003 * 109.46158 * 178.24166 * 18 17 16 37 37 H 1.08996 * 109.50067 * 299.23984 * 19 18 17 38 38 H 1.08993 * 109.50192 * 179.12052 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 6 2.4747 -6.1500 0.0005 13 8 1.7603 -7.3876 0.0017 14 6 2.6003 -8.5436 0.0018 15 6 1.8904 -9.6918 0.7245 16 6 2.7685 -10.9439 0.6683 17 7 3.0199 -11.3046 -0.7328 18 6 3.7427 -10.2363 -1.4346 19 6 2.8936 -8.9630 -1.4413 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8906 24 1 2.8721 -3.6043 -0.8894 25 1 0.8535 -5.0451 -0.8886 26 1 0.8540 -5.0446 0.8913 27 1 3.1020 -6.0921 0.8901 28 1 3.1008 -6.0923 -0.8899 29 1 3.5358 -8.3151 0.5121 30 1 0.9366 -9.8942 0.2372 31 1 1.7169 -9.4153 1.7644 32 1 2.2596 -11.7672 1.1696 33 1 3.7167 -10.7452 1.1678 34 1 3.5170 -12.1803 -0.7972 35 1 4.6863 -10.0408 -0.9252 36 1 3.9415 -10.5456 -2.4608 37 1 1.9557 -9.1539 -1.9627 38 1 3.4370 -8.1659 -1.9486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385278907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:38 Heat of formation + Delta-G solvation = -79.182764 kcal Electronic energy + Delta-G solvation = -15461.220348 eV Core-core repulsion = 12916.217519 eV Total energy + Delta-G solvation = -2545.002829 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.28996 -36.99676 -34.56061 -32.42771 -31.11846 -31.00279 -28.48116 -24.84280 -23.30172 -23.22022 -21.66139 -20.23532 -19.77742 -17.17459 -16.27055 -16.19254 -15.61562 -14.90299 -14.73199 -14.40757 -14.09940 -13.96245 -13.04188 -12.89019 -12.48080 -12.41394 -11.77399 -11.69151 -11.42870 -11.41608 -11.02703 -10.89557 -10.67710 -10.55120 -10.48722 -10.35079 -9.64331 -9.31957 -9.28309 -9.02969 -8.80269 -8.31292 -5.96359 -3.98958 3.35107 3.39314 3.41704 3.71589 3.89213 4.48635 4.61261 4.63926 4.91691 4.95601 5.10008 5.21172 5.30528 5.38592 5.41088 5.41884 5.53602 5.54345 5.71355 5.80984 5.86187 6.03691 6.09480 6.15742 6.23541 6.51431 6.67882 6.81586 6.95336 7.02932 7.13666 7.44427 7.71843 7.87467 8.04352 8.46448 9.08204 9.64719 11.14988 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.076906 B = 0.003525 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.993299 B = 7941.109910 C = 8084.016723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.063 3.937 13 O -0.381 6.381 14 C 0.089 3.911 15 C -0.116 4.116 16 C 0.061 3.939 17 N -0.691 5.691 18 C 0.061 3.939 19 C -0.141 4.141 20 H 0.261 0.739 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.342 0.658 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 -21.434 -0.176 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.013 4.013 13 O -0.301 6.301 14 C 0.030 3.970 15 C -0.153 4.153 16 C -0.068 4.068 17 N -0.323 5.323 18 C -0.069 4.069 19 C -0.179 4.179 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.160 0.840 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.305 -21.101 -0.386 22.026 hybrid contribution 1.669 0.908 0.346 1.931 sum 7.974 -20.193 -0.041 21.711 Atomic orbital electron populations 1.69960 1.06050 1.26674 1.50829 1.25036 0.94853 0.99235 0.95390 0.86657 0.79575 0.83177 0.78576 1.20260 1.21282 1.20274 1.21242 0.92981 0.91185 1.50608 0.92789 1.19087 0.93991 0.91152 0.97337 1.21578 0.99185 0.93535 1.00234 1.21639 0.98090 0.92902 1.02758 1.22722 0.95388 0.83758 0.99435 1.87944 1.33793 1.13357 1.94982 1.22052 0.93400 0.86453 0.95050 1.21656 1.00028 0.92779 1.00886 1.21897 0.98315 0.97842 0.88793 1.60276 1.52400 1.05473 1.14144 1.21887 0.94381 0.91770 0.98845 1.22112 1.01408 0.96461 0.97914 0.92954 0.96524 0.96526 0.93401 0.93374 0.91690 0.91709 0.93807 0.93775 0.92880 0.90164 0.90887 0.90250 0.95173 0.83979 0.95237 0.90471 0.90164 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 11 C -0.12 -2.13 5.58 -26.73 -0.15 -2.28 16 12 C 0.06 0.98 5.75 37.16 0.21 1.19 16 13 O -0.38 -5.87 9.99 -35.23 -0.35 -6.23 16 14 C 0.09 1.07 2.68 -26.61 -0.07 1.00 16 15 C -0.12 -1.22 5.75 -26.65 -0.15 -1.38 16 16 C 0.06 0.51 6.55 -3.83 -0.03 0.48 16 17 N -0.69 -5.85 6.85 -113.81 -0.78 -6.63 16 18 C 0.06 0.53 6.55 -3.83 -0.03 0.50 16 19 C -0.14 -1.54 5.72 -26.65 -0.15 -1.69 16 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.04 0.64 7.96 -51.93 -0.41 0.23 16 29 H 0.05 0.61 7.79 -51.93 -0.40 0.21 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.34 2.15 8.90 -39.29 -0.35 1.80 16 35 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.74 7.96 -51.93 -0.41 0.33 16 LS Contribution 306.85 15.07 4.62 4.62 Total: -1.00 -31.18 306.85 -8.88 -40.06 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -7.04 Total: -3.94 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -1.05 Total: -18.07 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: -0.04 Total: -33.40 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.35 Total: -6.23 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.18 -8.88 -40.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385278907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.124 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds