Wall clock time and date at job start Mon Mar 30 2020 03:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99646 * 2 1 4 4 H 1.48499 * 109.47065 * 239.99649 * 3 2 1 5 5 H 1.48494 * 109.47020 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46662 * 119.99623 * 3 2 1 7 7 C 1.37877 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99514 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46450 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46996 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47362 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.47375 * 179.97438 * 12 11 10 14 14 C 1.42896 * 113.99993 * 180.02562 * 13 12 11 15 15 C 1.53118 * 109.52216 * 150.00467 * 14 13 12 16 16 C 1.53034 * 109.28068 * 177.55794 * 15 14 13 17 17 N 1.46848 * 109.52504 * 300.82023 * 16 15 14 18 18 C 1.46847 * 111.19556 * 61.74015 * 17 16 15 19 19 C 1.53044 * 109.52516 * 298.25761 * 18 17 16 20 20 H 0.97001 * 120.00535 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47191 * 60.00705 * 9 7 2 22 22 H 1.08998 * 109.47417 * 299.99916 * 9 7 2 23 23 H 1.08999 * 109.47167 * 60.00686 * 10 9 7 24 24 H 1.08998 * 109.47436 * 300.00142 * 10 9 7 25 25 H 1.09004 * 109.46965 * 60.00111 * 11 10 9 26 26 H 1.09003 * 109.47542 * 300.00587 * 11 10 9 27 27 H 1.09003 * 109.46464 * 60.00062 * 12 11 10 28 28 H 1.08998 * 109.47266 * 300.00276 * 12 11 10 29 29 H 1.08992 * 109.57379 * 29.84553 * 14 13 12 30 30 H 1.09001 * 109.50624 * 57.61815 * 15 14 13 31 31 H 1.08998 * 109.50047 * 297.50272 * 15 14 13 32 32 H 1.09000 * 109.46341 * 180.80474 * 16 15 14 33 33 H 1.08999 * 109.46274 * 60.83372 * 16 15 14 34 34 H 1.00901 * 111.00066 * 185.83397 * 17 16 15 35 35 H 1.08999 * 109.46628 * 58.27319 * 18 17 16 36 36 H 1.09003 * 109.46158 * 178.24166 * 18 17 16 37 37 H 1.08996 * 109.50067 * 299.23984 * 19 18 17 38 38 H 1.08993 * 109.50192 * 179.12052 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 6 2.4747 -6.1500 0.0005 13 8 1.7603 -7.3876 0.0017 14 6 2.6003 -8.5436 0.0018 15 6 1.8904 -9.6918 0.7245 16 6 2.7685 -10.9439 0.6683 17 7 3.0199 -11.3046 -0.7328 18 6 3.7427 -10.2363 -1.4346 19 6 2.8936 -8.9630 -1.4413 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8906 24 1 2.8721 -3.6043 -0.8894 25 1 0.8535 -5.0451 -0.8886 26 1 0.8540 -5.0446 0.8913 27 1 3.1020 -6.0921 0.8901 28 1 3.1008 -6.0923 -0.8899 29 1 3.5358 -8.3151 0.5121 30 1 0.9366 -9.8942 0.2372 31 1 1.7169 -9.4153 1.7644 32 1 2.2596 -11.7672 1.1696 33 1 3.7167 -10.7452 1.1678 34 1 3.5170 -12.1803 -0.7972 35 1 4.6863 -10.0408 -0.9252 36 1 3.9415 -10.5456 -2.4608 37 1 1.9557 -9.1539 -1.9627 38 1 3.4370 -8.1659 -1.9486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385278907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:37 Heat of formation + Delta-G solvation = -99.788296 kcal Electronic energy + Delta-G solvation = -15462.113871 eV Core-core repulsion = 12916.217519 eV Total energy + Delta-G solvation = -2545.896352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20618 -38.02321 -36.33336 -34.36662 -32.13116 -31.79789 -30.22906 -26.66068 -24.24868 -24.03681 -23.24995 -21.85109 -20.75691 -18.44374 -17.98518 -17.28350 -16.89569 -16.51071 -15.67195 -15.60771 -15.43922 -14.76556 -14.43462 -14.23998 -14.01468 -13.56628 -13.22638 -13.06432 -12.98179 -12.58722 -12.43298 -12.29044 -12.20588 -11.98067 -11.78694 -11.48012 -11.42217 -11.33355 -11.06682 -10.55596 -10.38778 -9.42725 -8.20063 -6.32172 1.39850 1.43616 1.51591 2.40527 2.65205 3.12628 3.27001 3.80876 3.83297 4.04052 4.05130 4.20219 4.24043 4.32794 4.40793 4.43686 4.57000 4.61402 4.63076 4.78682 4.85591 4.88158 4.91626 5.07020 5.13965 5.20089 5.22814 5.26509 5.30877 5.52175 5.74334 5.85001 6.02299 6.23683 6.33297 6.51304 6.85150 7.37281 8.91894 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.076906 B = 0.003525 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.993299 B = 7941.109910 C = 8084.016723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.110 4.110 12 C 0.072 3.928 13 O -0.403 6.403 14 C 0.081 3.919 15 C -0.115 4.115 16 C 0.065 3.935 17 N -0.701 5.701 18 C 0.064 3.936 19 C -0.140 4.140 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.010 1.010 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.357 0.643 35 H 0.039 0.961 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.339 -22.094 -0.052 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.147 4.147 12 C -0.004 4.004 13 O -0.323 6.323 14 C 0.024 3.976 15 C -0.153 4.153 16 C -0.064 4.064 17 N -0.334 5.334 18 C -0.065 4.065 19 C -0.178 4.178 20 H 0.073 0.927 21 H 0.008 0.992 22 H 0.008 0.992 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.177 0.823 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.384 -21.793 -0.264 23.352 hybrid contribution 0.968 1.067 0.305 1.472 sum 9.352 -20.727 0.041 22.739 Atomic orbital electron populations 1.70107 1.07947 1.27906 1.51620 1.26055 0.95806 1.03604 0.94665 0.85451 0.78224 0.77791 0.79285 1.19014 1.20850 1.19017 1.21712 0.93674 0.92361 1.50686 0.91889 1.19022 0.94518 0.93250 0.94732 1.21356 0.98034 0.92760 1.01023 1.21464 0.98327 0.93054 1.01896 1.22512 0.94295 0.82966 1.00618 1.87908 1.35121 1.14074 1.95212 1.22312 0.93543 0.85634 0.96152 1.21676 0.99713 0.93407 1.00547 1.21876 0.98383 0.97104 0.89056 1.60230 1.52929 1.06116 1.14171 1.21850 0.94081 0.90759 0.99812 1.22089 1.01036 0.97796 0.96888 0.92736 0.99215 0.99172 0.92478 0.92507 0.92683 0.92565 0.92506 0.92620 0.91897 0.91771 0.90709 0.88758 0.94220 0.82336 0.94310 0.89302 0.91910 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.46 13.29 21.45 0.28 -58.17 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.96 5.15 30.59 0.16 -3.81 16 11 C -0.11 -4.03 5.58 30.59 0.17 -3.85 16 12 C 0.07 2.15 5.75 71.98 0.41 2.56 16 13 O -0.40 -12.17 9.99 -148.98 -1.49 -13.66 16 14 C 0.08 1.86 2.68 30.67 0.08 1.95 16 15 C -0.12 -2.32 5.75 30.65 0.18 -2.14 16 16 C 0.07 0.94 6.55 86.32 0.57 1.51 16 17 N -0.70 -10.33 6.85 -513.99 -3.52 -13.85 16 18 C 0.06 0.98 6.55 86.33 0.57 1.55 16 19 C -0.14 -2.90 5.72 30.65 0.18 -2.73 16 20 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 21 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 22 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 23 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 1.54 8.09 -2.39 -0.02 1.52 16 28 H 0.06 1.52 7.96 -2.39 -0.02 1.51 16 29 H 0.06 1.32 7.79 -2.39 -0.02 1.30 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.36 3.56 8.90 -89.69 -0.80 2.76 16 35 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.40 7.96 -2.39 -0.02 1.38 16 Total: -1.00 -66.98 306.85 0.66 -66.33 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.20 Total: 7.54 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 3.15 Total: -35.03 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -3.23 Total: -72.02 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.49 Total: -13.66 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.98 0.66 -66.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385278907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.460 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds