Wall clock time and date at job start Mon Mar 30 2020 03:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48504 * 109.46729 * 239.99600 * 3 2 1 5 5 H 1.48497 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47336 * 119.99872 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99595 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47077 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 11 15 15 H 1.08994 * 109.52613 * 34.87665 * 14 13 12 16 16 C 1.53178 * 109.51876 * 155.00070 * 14 13 12 17 17 C 1.53179 * 109.03629 * 176.88702 * 16 14 13 18 18 C 1.53092 * 109.16186 * 303.01621 * 17 16 14 19 19 O 1.42910 * 109.41270 * 57.60938 * 18 17 16 20 20 C 1.42896 * 114.09605 * 298.83975 * 19 18 17 21 21 H 0.97006 * 120.00146 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46666 * 60.00155 * 9 7 2 23 23 H 1.09000 * 109.47313 * 299.99994 * 9 7 2 24 24 H 1.08993 * 109.46885 * 60.00477 * 10 9 7 25 25 H 1.09000 * 109.47227 * 300.00302 * 10 9 7 26 26 H 1.08995 * 109.47786 * 59.99734 * 11 10 9 27 27 H 1.09008 * 109.46885 * 300.00227 * 11 10 9 28 28 H 1.09002 * 109.47142 * 60.00048 * 12 11 10 29 29 H 1.09000 * 109.46991 * 299.99792 * 12 11 10 30 30 H 1.00896 * 111.00309 * 56.04370 * 13 12 11 31 31 H 1.09004 * 109.54789 * 296.74961 * 16 14 13 32 32 H 1.08999 * 109.54790 * 56.92752 * 16 14 13 33 33 H 1.08993 * 109.52603 * 62.92260 * 17 16 14 34 34 H 1.08998 * 109.52130 * 183.05255 * 17 16 14 35 35 H 1.08995 * 109.48245 * 177.58988 * 18 17 16 36 36 H 1.09004 * 109.48208 * 297.61658 * 18 17 16 37 37 H 1.08997 * 109.48684 * 301.17657 * 20 19 18 38 38 H 1.09006 * 109.47939 * 181.13585 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 7 1.7399 -7.4222 0.0005 14 6 2.6644 -8.5638 0.0005 15 1 3.5486 -8.3165 0.5879 16 6 1.9696 -9.7850 0.6107 17 6 2.9151 -10.9878 0.5343 18 6 3.3190 -11.2176 -0.9244 19 8 3.9311 -10.0336 -1.4400 20 6 3.0779 -8.8873 -1.4375 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 0.8538 -5.0446 -0.8902 27 1 0.8532 -5.0450 0.8897 28 1 3.1005 -6.0923 0.8910 29 1 3.1017 -6.0922 -0.8890 30 1 1.1037 -7.4725 -0.7810 31 1 1.7224 -9.5813 1.6526 32 1 1.0571 -10.0010 0.0550 33 1 3.8050 -10.7901 1.1317 34 1 2.4089 -11.8739 0.9169 35 1 4.0255 -12.0457 -0.9799 36 1 2.4333 -11.4553 -1.5137 37 1 2.1891 -9.0943 -2.0335 38 1 3.6108 -8.0366 -1.8625 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385319603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:19 Heat of formation + Delta-G solvation = -79.419454 kcal Electronic energy + Delta-G solvation = -15476.306887 eV Core-core repulsion = 12931.293795 eV Total energy + Delta-G solvation = -2545.013093 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71401 -36.60601 -34.43784 -33.15088 -32.10511 -29.88451 -27.42505 -25.21122 -24.44997 -22.74576 -21.48412 -20.49598 -19.87230 -16.77188 -16.40126 -16.15471 -15.50903 -15.05943 -14.75874 -14.58180 -14.35398 -13.79417 -13.12726 -12.85450 -12.62055 -12.38461 -11.84986 -11.67755 -11.46761 -11.33378 -11.03105 -10.92622 -10.75463 -10.57197 -10.48840 -10.40682 -9.88113 -9.61330 -9.24035 -8.99626 -8.36129 -8.30647 -5.96225 -3.98533 3.35407 3.39494 3.42170 3.55389 4.15102 4.49082 4.55015 4.62173 4.67863 4.80189 4.95665 5.17104 5.29435 5.38212 5.39559 5.43317 5.48727 5.55548 5.63130 5.73980 5.89931 5.99138 5.99737 6.16992 6.25272 6.51572 6.81105 6.84129 6.98244 7.07044 7.23678 7.35690 7.72359 7.88453 8.04815 8.47638 9.08825 9.65233 11.15120 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.074611 B = 0.003529 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.191247 B = 7932.144607 C = 8097.330579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.058 3.942 13 N -0.681 5.681 14 C 0.053 3.947 15 H 0.085 0.915 16 C -0.111 4.111 17 C -0.156 4.156 18 C 0.058 3.942 19 O -0.382 6.382 20 C 0.032 3.968 21 H 0.260 0.740 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.340 0.660 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.542 -21.529 -0.993 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.071 4.071 13 N -0.312 5.312 14 C -0.057 4.057 15 H 0.103 0.897 16 C -0.149 4.149 17 C -0.194 4.194 18 C -0.019 4.019 19 O -0.300 6.300 20 C -0.046 4.046 21 H 0.070 0.930 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.158 0.842 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.499 -21.410 -0.378 21.881 hybrid contribution 0.449 1.009 -0.826 1.379 sum 4.948 -20.402 -1.204 21.028 Atomic orbital electron populations 1.69960 1.06051 1.26633 1.50958 1.25033 0.94851 0.99228 0.95412 0.86665 0.79584 0.83190 0.78597 1.20279 1.21300 1.20247 1.21260 0.92995 0.91246 1.50449 0.92817 1.19086 0.94016 0.91325 0.97143 1.21592 0.99096 0.93942 1.00111 1.21643 0.97869 0.93846 1.02017 1.22150 0.96288 0.88399 1.00251 1.60620 1.19249 1.01493 1.49818 1.22232 0.96014 0.91762 0.95715 0.89689 1.21579 0.97921 0.93082 1.02282 1.22217 1.00525 0.99019 0.97665 1.22605 0.98156 0.87735 0.93377 1.87938 1.39891 1.18190 1.83938 1.23428 0.94934 0.88906 0.97340 0.92993 0.96749 0.96607 0.93419 0.93658 0.92731 0.91620 0.91144 0.95415 0.84226 0.90675 0.91814 0.91013 0.90737 0.88984 0.93265 0.93103 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C -0.12 -1.98 5.47 -26.73 -0.15 -2.12 16 12 C 0.06 0.81 5.49 -3.82 -0.02 0.79 16 13 N -0.68 -8.33 6.26 -106.57 -0.67 -9.00 16 14 C 0.05 0.58 2.67 -67.57 -0.18 0.40 16 15 H 0.08 1.00 7.80 -51.93 -0.41 0.60 16 16 C -0.11 -1.03 5.64 -26.55 -0.15 -1.18 16 17 C -0.16 -1.23 6.14 -26.59 -0.16 -1.39 16 18 C 0.06 0.48 6.84 37.21 0.25 0.74 16 19 O -0.38 -4.32 10.77 -35.23 -0.38 -4.70 16 20 C 0.03 0.34 6.10 37.20 0.23 0.57 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 28 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 29 H 0.03 0.38 7.51 -51.93 -0.39 -0.01 16 30 H 0.34 3.85 8.44 -39.29 -0.33 3.52 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 38 H 0.09 0.99 7.54 -51.93 -0.39 0.60 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -30.77 305.40 -8.57 -39.34 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.97 Total: -2.40 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -0.87 Total: -18.09 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.07 Total: -35.72 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.38 Total: -4.70 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.77 -8.57 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385319603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.084 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds