Wall clock time and date at job start Mon Mar 30 2020 03:25:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 119.99935 * 2 1
4 4 H 1.48504 * 109.46729 * 239.99600 * 3 2 1
5 5 H 1.48497 * 109.47133 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47336 * 119.99872 * 3 2 1
7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99595 * 180.02562 * 7 2 1
9 9 C 1.50696 * 120.00436 * 0.02562 * 7 2 1
10 10 C 1.53006 * 109.47129 * 179.97438 * 9 7 2
11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7
12 12 C 1.52998 * 109.47077 * 180.02562 * 11 10 9
13 13 N 1.46906 * 109.47020 * 179.97438 * 12 11 10
14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 11
15 15 H 1.08994 * 109.52613 * 34.87665 * 14 13 12
16 16 C 1.53178 * 109.51876 * 155.00070 * 14 13 12
17 17 C 1.53179 * 109.03629 * 176.88702 * 16 14 13
18 18 C 1.53092 * 109.16186 * 303.01621 * 17 16 14
19 19 O 1.42910 * 109.41270 * 57.60938 * 18 17 16
20 20 C 1.42896 * 114.09605 * 298.83975 * 19 18 17
21 21 H 0.97006 * 120.00146 * 0.02562 * 1 2 3
22 22 H 1.09002 * 109.46666 * 60.00155 * 9 7 2
23 23 H 1.09000 * 109.47313 * 299.99994 * 9 7 2
24 24 H 1.08993 * 109.46885 * 60.00477 * 10 9 7
25 25 H 1.09000 * 109.47227 * 300.00302 * 10 9 7
26 26 H 1.08995 * 109.47786 * 59.99734 * 11 10 9
27 27 H 1.09008 * 109.46885 * 300.00227 * 11 10 9
28 28 H 1.09002 * 109.47142 * 60.00048 * 12 11 10
29 29 H 1.09000 * 109.46991 * 299.99792 * 12 11 10
30 30 H 1.00896 * 111.00309 * 56.04370 * 13 12 11
31 31 H 1.09004 * 109.54789 * 296.74961 * 16 14 13
32 32 H 1.08999 * 109.54790 * 56.92752 * 16 14 13
33 33 H 1.08993 * 109.52603 * 62.92260 * 17 16 14
34 34 H 1.08998 * 109.52130 * 183.05255 * 17 16 14
35 35 H 1.08995 * 109.48245 * 177.58988 * 18 17 16
36 36 H 1.09004 * 109.48208 * 297.61658 * 18 17 16
37 37 H 1.08997 * 109.48684 * 301.17657 * 20 19 18
38 38 H 1.09006 * 109.47939 * 181.13585 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6963 -1.2125
5 1 1.2841 2.7464 -0.0006
6 1 3.1029 1.6965 1.2125
7 6 2.0044 -1.1941 0.0005
8 1 3.0844 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4802 -4.9871 -0.0001
12 6 2.4744 -6.1500 0.0005
13 7 1.7399 -7.4222 0.0005
14 6 2.6644 -8.5638 0.0005
15 1 3.5486 -8.3165 0.5879
16 6 1.9696 -9.7850 0.6107
17 6 2.9151 -10.9878 0.5343
18 6 3.3190 -11.2176 -0.9244
19 8 3.9311 -10.0336 -1.4400
20 6 3.0779 -8.8873 -1.4375
21 1 -0.4850 0.8401 -0.0004
22 1 0.6247 -2.5570 -0.8897
23 1 0.6239 -2.5567 0.8903
24 1 2.8718 -3.6044 0.8905
25 1 2.8719 -3.6043 -0.8894
26 1 0.8538 -5.0446 -0.8902
27 1 0.8532 -5.0450 0.8897
28 1 3.1005 -6.0923 0.8910
29 1 3.1017 -6.0922 -0.8890
30 1 1.1037 -7.4725 -0.7810
31 1 1.7224 -9.5813 1.6526
32 1 1.0571 -10.0010 0.0550
33 1 3.8050 -10.7901 1.1317
34 1 2.4089 -11.8739 0.9169
35 1 4.0255 -12.0457 -0.9799
36 1 2.4333 -11.4553 -1.5137
37 1 2.1891 -9.0943 -2.0335
38 1 3.6108 -8.0366 -1.8625
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385319603.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:18
Heat of formation + Delta-G solvation = -99.612255 kcal
Electronic energy + Delta-G solvation = -15477.182513 eV
Core-core repulsion = 12931.293795 eV
Total energy + Delta-G solvation = -2545.888718 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.50648 -37.75270 -36.03623 -34.49057 -33.51957 -31.19021 -28.92388 -26.13688
-25.96088 -23.80181 -22.80006 -21.89166 -21.05127 -18.44098 -17.55814 -17.18753
-16.56304 -16.51459 -15.96665 -15.89077 -15.35407 -14.80062 -14.54319 -14.08335
-13.97070 -13.56560 -13.46065 -13.12427 -12.83992 -12.51593 -12.34135 -12.29059
-12.12260 -12.06674 -11.74244 -11.47288 -11.37984 -11.30354 -10.95979 -10.66169
-10.54987 -9.31921 -8.19948 -6.31609 1.39462 1.42936 1.50926 2.40928
2.78623 3.12653 3.24066 3.74651 3.85306 3.99451 4.07338 4.13340
4.22446 4.25964 4.46539 4.51986 4.58700 4.67273 4.72656 4.79427
4.85354 4.92474 4.93735 5.07872 5.22293 5.25253 5.26605 5.32696
5.36525 5.54821 5.77930 5.86598 5.95010 6.24432 6.25924 6.41292
6.85889 7.37730 8.91767
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.074611 B = 0.003529 C = 0.003457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 375.191247 B = 7932.144607 C = 8097.330579
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.003 4.003
3 Si 0.966 3.034
4 H -0.266 1.266
5 H -0.282 1.282
6 H -0.266 1.266
7 C -0.547 4.547
8 H 0.060 0.940
9 C 0.023 3.977
10 C -0.098 4.098
11 C -0.105 4.105
12 C 0.070 3.930
13 N -0.684 5.684
14 C 0.056 3.944
15 H 0.074 0.926
16 C -0.109 4.109
17 C -0.150 4.150
18 C 0.052 3.948
19 O -0.403 6.403
20 C 0.035 3.965
21 H 0.264 0.736
22 H -0.010 1.010
23 H -0.011 1.011
24 H 0.049 0.951
25 H 0.050 0.950
26 H 0.055 0.945
27 H 0.055 0.945
28 H 0.069 0.931
29 H 0.035 0.965
30 H 0.346 0.654
31 H 0.068 0.932
32 H 0.069 0.931
33 H 0.066 0.934
34 H 0.095 0.905
35 H 0.108 0.892
36 H 0.059 0.941
37 H 0.060 0.940
38 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.540 -22.320 -1.153 23.026
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.200 4.200
3 Si 0.790 3.210
4 H -0.191 1.191
5 H -0.207 1.207
6 H -0.191 1.191
7 C -0.585 4.585
8 H 0.078 0.922
9 C -0.014 4.014
10 C -0.136 4.136
11 C -0.143 4.143
12 C -0.059 4.059
13 N -0.316 5.316
14 C -0.054 4.054
15 H 0.092 0.908
16 C -0.147 4.147
17 C -0.189 4.189
18 C -0.025 4.025
19 O -0.321 6.321
20 C -0.043 4.043
21 H 0.073 0.927
22 H 0.009 0.991
23 H 0.007 0.993
24 H 0.068 0.932
25 H 0.069 0.931
26 H 0.074 0.926
27 H 0.074 0.926
28 H 0.087 0.913
29 H 0.053 0.947
30 H 0.165 0.835
31 H 0.087 0.913
32 H 0.087 0.913
33 H 0.085 0.915
34 H 0.113 0.887
35 H 0.126 0.874
36 H 0.077 0.923
37 H 0.079 0.921
38 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 5.506 -22.226 -0.538 22.904
hybrid contribution 0.100 1.208 -0.773 1.438
sum 5.605 -21.018 -1.311 21.792
Atomic orbital electron populations
1.70098 1.07851 1.27856 1.51671 1.26023 0.95809 1.03482 0.94702
0.85486 0.78275 0.77974 0.79231 1.19097 1.20743 1.19133 1.21732
0.93586 0.92596 1.50608 0.92212 1.19017 0.94501 0.93243 0.94638
1.21405 0.98007 0.93749 1.00444 1.21461 0.98011 0.93226 1.01618
1.21909 0.95349 0.88127 1.00561 1.60577 1.19526 1.01132 1.50321
1.22222 0.95468 0.91669 0.96056 0.90795 1.21565 0.98363 0.92962
1.01774 1.22189 1.00107 0.99094 0.97472 1.22825 0.98975 0.87104
0.93554 1.87912 1.40808 1.19051 1.84314 1.23364 0.95123 0.88824
0.97008 0.92746 0.99136 0.99260 0.93174 0.93083 0.92599 0.92598
0.91299 0.94682 0.83530 0.91276 0.91264 0.91530 0.88694 0.87432
0.92302 0.92136 0.89671
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16
2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16
3 Si 0.97 44.94 29.54 68.60 2.03 46.96 16
4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16
6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
7 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16
8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16
9 C 0.02 1.26 4.97 29.85 0.15 1.40 16
10 C -0.10 -4.08 5.15 30.59 0.16 -3.93 16
11 C -0.11 -3.56 5.47 30.59 0.17 -3.39 16
12 C 0.07 1.88 5.49 86.30 0.47 2.35 16
13 N -0.68 -15.91 6.26 -491.09 -3.07 -18.98 16
14 C 0.06 1.14 2.67 45.01 0.12 1.26 16
15 H 0.07 1.67 7.80 -2.39 -0.02 1.65 16
16 C -0.11 -1.84 5.64 30.71 0.17 -1.66 16
17 C -0.15 -2.05 6.14 30.69 0.19 -1.86 16
18 C 0.05 0.75 6.84 72.01 0.49 1.24 16
19 O -0.40 -8.49 10.77 -148.98 -1.60 -10.10 16
20 C 0.04 0.69 6.10 72.01 0.44 1.13 16
21 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16
22 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16
24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16
25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
26 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16
27 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16
28 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16
29 H 0.03 0.91 7.51 -2.39 -0.02 0.89 16
30 H 0.35 7.36 8.44 -89.70 -0.76 6.60 16
31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16
32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16
35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16
36 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16
37 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16
38 H 0.09 1.75 7.54 -2.38 -0.02 1.74 16
Total: -1.00 -65.73 305.40 0.93 -64.79
By element:
Atomic # 1 Polarization: 9.82 SS G_CDS: 0.24 Total: 10.06 kcal
Atomic # 6 Polarization: -37.99 SS G_CDS: 3.06 Total: -34.93 kcal
Atomic # 7 Polarization: -74.01 SS G_CDS: -2.79 Total: -76.80 kcal
Atomic # 8 Polarization: -8.49 SS G_CDS: -1.60 Total: -10.10 kcal
Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal
Total: -65.73 0.93 -64.79 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385319603.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.819 kcal
(2) G-P(sol) polarization free energy of solvation -65.729 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.547 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.612 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds