Wall clock time and date at job start Mon Mar 30 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48504 * 109.46729 * 239.99600 * 3 2 1 5 5 H 1.48497 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47336 * 119.99872 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99595 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47077 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 11 15 15 H 1.08994 * 109.52613 * 34.87665 * 14 13 12 16 16 C 1.53178 * 109.51876 * 155.00070 * 14 13 12 17 17 C 1.53179 * 109.03629 * 176.88702 * 16 14 13 18 18 C 1.53092 * 109.16186 * 303.01621 * 17 16 14 19 19 O 1.42910 * 109.41270 * 57.60938 * 18 17 16 20 20 C 1.42896 * 114.09605 * 298.83975 * 19 18 17 21 21 H 0.97006 * 120.00146 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46666 * 60.00155 * 9 7 2 23 23 H 1.09000 * 109.47313 * 299.99994 * 9 7 2 24 24 H 1.08993 * 109.46885 * 60.00477 * 10 9 7 25 25 H 1.09000 * 109.47227 * 300.00302 * 10 9 7 26 26 H 1.08995 * 109.47786 * 59.99734 * 11 10 9 27 27 H 1.09008 * 109.46885 * 300.00227 * 11 10 9 28 28 H 1.09002 * 109.47142 * 60.00048 * 12 11 10 29 29 H 1.09000 * 109.46991 * 299.99792 * 12 11 10 30 30 H 1.00896 * 111.00309 * 56.04370 * 13 12 11 31 31 H 1.09004 * 109.54789 * 296.74961 * 16 14 13 32 32 H 1.08999 * 109.54790 * 56.92752 * 16 14 13 33 33 H 1.08993 * 109.52603 * 62.92260 * 17 16 14 34 34 H 1.08998 * 109.52130 * 183.05255 * 17 16 14 35 35 H 1.08995 * 109.48245 * 177.58988 * 18 17 16 36 36 H 1.09004 * 109.48208 * 297.61658 * 18 17 16 37 37 H 1.08997 * 109.48684 * 301.17657 * 20 19 18 38 38 H 1.09006 * 109.47939 * 181.13585 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 7 1.7399 -7.4222 0.0005 14 6 2.6644 -8.5638 0.0005 15 1 3.5486 -8.3165 0.5879 16 6 1.9696 -9.7850 0.6107 17 6 2.9151 -10.9878 0.5343 18 6 3.3190 -11.2176 -0.9244 19 8 3.9311 -10.0336 -1.4400 20 6 3.0779 -8.8873 -1.4375 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 0.8538 -5.0446 -0.8902 27 1 0.8532 -5.0450 0.8897 28 1 3.1005 -6.0923 0.8910 29 1 3.1017 -6.0922 -0.8890 30 1 1.1037 -7.4725 -0.7810 31 1 1.7224 -9.5813 1.6526 32 1 1.0571 -10.0010 0.0550 33 1 3.8050 -10.7901 1.1317 34 1 2.4089 -11.8739 0.9169 35 1 4.0255 -12.0457 -0.9799 36 1 2.4333 -11.4553 -1.5137 37 1 2.1891 -9.0943 -2.0335 38 1 3.6108 -8.0366 -1.8625 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385319603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:18 Heat of formation + Delta-G solvation = -99.612255 kcal Electronic energy + Delta-G solvation = -15477.182513 eV Core-core repulsion = 12931.293795 eV Total energy + Delta-G solvation = -2545.888718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50648 -37.75270 -36.03623 -34.49057 -33.51957 -31.19021 -28.92388 -26.13688 -25.96088 -23.80181 -22.80006 -21.89166 -21.05127 -18.44098 -17.55814 -17.18753 -16.56304 -16.51459 -15.96665 -15.89077 -15.35407 -14.80062 -14.54319 -14.08335 -13.97070 -13.56560 -13.46065 -13.12427 -12.83992 -12.51593 -12.34135 -12.29059 -12.12260 -12.06674 -11.74244 -11.47288 -11.37984 -11.30354 -10.95979 -10.66169 -10.54987 -9.31921 -8.19948 -6.31609 1.39462 1.42936 1.50926 2.40928 2.78623 3.12653 3.24066 3.74651 3.85306 3.99451 4.07338 4.13340 4.22446 4.25964 4.46539 4.51986 4.58700 4.67273 4.72656 4.79427 4.85354 4.92474 4.93735 5.07872 5.22293 5.25253 5.26605 5.32696 5.36525 5.54821 5.77930 5.86598 5.95010 6.24432 6.25924 6.41292 6.85889 7.37730 8.91767 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.074611 B = 0.003529 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.191247 B = 7932.144607 C = 8097.330579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.098 4.098 11 C -0.105 4.105 12 C 0.070 3.930 13 N -0.684 5.684 14 C 0.056 3.944 15 H 0.074 0.926 16 C -0.109 4.109 17 C -0.150 4.150 18 C 0.052 3.948 19 O -0.403 6.403 20 C 0.035 3.965 21 H 0.264 0.736 22 H -0.010 1.010 23 H -0.011 1.011 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.346 0.654 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.540 -22.320 -1.153 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.136 4.136 11 C -0.143 4.143 12 C -0.059 4.059 13 N -0.316 5.316 14 C -0.054 4.054 15 H 0.092 0.908 16 C -0.147 4.147 17 C -0.189 4.189 18 C -0.025 4.025 19 O -0.321 6.321 20 C -0.043 4.043 21 H 0.073 0.927 22 H 0.009 0.991 23 H 0.007 0.993 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.165 0.835 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.506 -22.226 -0.538 22.904 hybrid contribution 0.100 1.208 -0.773 1.438 sum 5.605 -21.018 -1.311 21.792 Atomic orbital electron populations 1.70098 1.07851 1.27856 1.51671 1.26023 0.95809 1.03482 0.94702 0.85486 0.78275 0.77974 0.79231 1.19097 1.20743 1.19133 1.21732 0.93586 0.92596 1.50608 0.92212 1.19017 0.94501 0.93243 0.94638 1.21405 0.98007 0.93749 1.00444 1.21461 0.98011 0.93226 1.01618 1.21909 0.95349 0.88127 1.00561 1.60577 1.19526 1.01132 1.50321 1.22222 0.95468 0.91669 0.96056 0.90795 1.21565 0.98363 0.92962 1.01774 1.22189 1.00107 0.99094 0.97472 1.22825 0.98975 0.87104 0.93554 1.87912 1.40808 1.19051 1.84314 1.23364 0.95123 0.88824 0.97008 0.92746 0.99136 0.99260 0.93174 0.93083 0.92599 0.92598 0.91299 0.94682 0.83530 0.91276 0.91264 0.91530 0.88694 0.87432 0.92302 0.92136 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.26 4.97 29.85 0.15 1.40 16 10 C -0.10 -4.08 5.15 30.59 0.16 -3.93 16 11 C -0.11 -3.56 5.47 30.59 0.17 -3.39 16 12 C 0.07 1.88 5.49 86.30 0.47 2.35 16 13 N -0.68 -15.91 6.26 -491.09 -3.07 -18.98 16 14 C 0.06 1.14 2.67 45.01 0.12 1.26 16 15 H 0.07 1.67 7.80 -2.39 -0.02 1.65 16 16 C -0.11 -1.84 5.64 30.71 0.17 -1.66 16 17 C -0.15 -2.05 6.14 30.69 0.19 -1.86 16 18 C 0.05 0.75 6.84 72.01 0.49 1.24 16 19 O -0.40 -8.49 10.77 -148.98 -1.60 -10.10 16 20 C 0.04 0.69 6.10 72.01 0.44 1.13 16 21 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 22 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 27 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 29 H 0.03 0.91 7.51 -2.39 -0.02 0.89 16 30 H 0.35 7.36 8.44 -89.70 -0.76 6.60 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 38 H 0.09 1.75 7.54 -2.38 -0.02 1.74 16 Total: -1.00 -65.73 305.40 0.93 -64.79 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.24 Total: 10.06 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 3.06 Total: -34.93 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -2.79 Total: -76.80 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -1.60 Total: -10.10 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.73 0.93 -64.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385319603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.819 kcal (2) G-P(sol) polarization free energy of solvation -65.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds