Wall clock time and date at job start Mon Mar 30 2020 03:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00662 * 2 1 4 4 H 1.48496 * 109.47073 * 270.00118 * 3 2 1 5 5 H 1.48501 * 109.47048 * 29.99768 * 3 2 1 6 6 H 1.48499 * 109.47585 * 149.99752 * 3 2 1 7 7 C 1.37882 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99610 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00540 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47524 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47116 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46657 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46457 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99486 * 185.21601 * 13 12 11 15 15 C 1.53002 * 112.85235 * 292.80827 * 14 13 12 16 16 O 1.42900 * 109.46924 * 305.08215 * 15 14 13 17 17 C 1.53783 * 113.61479 * 161.50030 * 14 13 12 18 18 C 1.53783 * 87.08273 * 220.02150 * 17 14 13 19 19 C 1.53781 * 87.08103 * 25.43022 * 18 17 14 20 20 H 0.97004 * 119.99296 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46706 * 60.00086 * 9 7 2 22 22 H 1.08992 * 109.47214 * 300.00640 * 9 7 2 23 23 H 1.09001 * 109.46573 * 60.00376 * 10 9 7 24 24 H 1.08996 * 109.47275 * 300.01017 * 10 9 7 25 25 H 1.08994 * 109.47335 * 60.00206 * 11 10 9 26 26 H 1.09000 * 109.47011 * 300.00332 * 11 10 9 27 27 H 1.08998 * 109.46830 * 299.99534 * 12 11 10 28 28 H 1.08998 * 109.47329 * 60.00575 * 12 11 10 29 29 H 1.00890 * 111.00162 * 61.26697 * 13 12 11 30 30 H 1.08998 * 109.46882 * 65.08704 * 15 14 13 31 31 H 1.09001 * 109.46963 * 185.08503 * 15 14 13 32 32 H 0.96698 * 114.00144 * 179.97438 * 16 15 14 33 33 H 1.09008 * 113.61324 * 334.57171 * 17 14 13 34 34 H 1.08994 * 113.61598 * 105.46989 * 17 14 13 35 35 H 1.08997 * 113.60937 * 270.88333 * 18 17 14 36 36 H 1.08997 * 113.61418 * 139.98245 * 18 17 14 37 37 H 1.08997 * 113.61379 * 220.01865 * 19 18 17 38 38 H 1.09006 * 113.61201 * 89.11741 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6368 0.0014 11 6 5.5514 -2.6368 0.0014 12 6 6.0613 -4.0794 0.0022 13 7 7.5303 -4.0794 0.0029 14 6 8.0567 -5.4452 -0.1211 15 6 7.7588 -6.3104 1.1052 16 8 8.2500 -5.6590 2.2784 17 6 9.5251 -5.5007 -0.5744 18 6 9.1272 -6.6999 -1.4511 19 6 7.7014 -6.1237 -1.4546 20 1 -0.4849 0.8401 0.0004 21 1 3.8751 -0.6798 0.8895 22 1 3.8745 -0.6810 -0.8904 23 1 3.6577 -3.1515 -0.8880 24 1 3.6583 -3.1497 0.8919 25 1 5.9147 -2.1222 0.8909 26 1 5.9148 -2.1238 -0.8890 27 1 5.6979 -4.5927 0.8925 28 1 5.6980 -4.5937 -0.8876 29 1 7.8915 -3.6263 0.8288 30 1 6.6822 -6.4561 1.1941 31 1 8.2484 -7.2780 0.9948 32 1 8.0951 -6.1517 3.0959 33 1 9.8390 -4.6271 -1.1458 34 1 10.2198 -5.7563 0.2257 35 1 9.2090 -7.6597 -0.9411 36 1 9.6009 -6.6993 -2.4328 37 1 6.9238 -6.8822 -1.3651 38 1 7.5167 -5.4205 -2.2667 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385321305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:06 Heat of formation + Delta-G solvation = -52.620954 kcal Electronic energy + Delta-G solvation = -15762.757156 eV Core-core repulsion = 13218.906133 eV Total energy + Delta-G solvation = -2543.851022 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97910 -36.31022 -35.70407 -33.43899 -31.78163 -28.76412 -27.06583 -25.96396 -24.40915 -22.73644 -21.08511 -19.99678 -18.46075 -17.62961 -16.70179 -16.35960 -15.53550 -15.26957 -14.56345 -14.29873 -14.09490 -13.76461 -12.83452 -12.59290 -12.54236 -12.36240 -11.98058 -11.76853 -11.59562 -11.14637 -10.98605 -10.77089 -10.67400 -10.52412 -10.37410 -10.14855 -9.82668 -9.62096 -9.40057 -9.09730 -8.48424 -8.34743 -5.99357 -3.96622 3.35439 3.42240 3.47586 3.75686 4.30578 4.39583 4.50666 4.57860 4.65716 4.85479 5.11812 5.14317 5.25958 5.35052 5.44905 5.53982 5.58397 5.69499 5.75109 5.84723 5.91910 6.06297 6.11385 6.19018 6.27513 6.46752 6.74043 6.84222 6.97985 7.21133 7.33164 7.40263 7.51618 7.54749 7.86483 8.60328 9.05945 9.63966 11.14327 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047239 B = 0.004320 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.584287 B = 6480.609119 C = 6520.451387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.668 5.668 14 C 0.085 3.915 15 C 0.065 3.935 16 O -0.569 6.569 17 C -0.118 4.118 18 C -0.145 4.145 19 C -0.121 4.121 20 H 0.262 0.738 21 H 0.014 0.986 22 H 0.011 0.989 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.346 0.654 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.380 0.620 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.911 -13.950 0.594 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.052 4.052 10 C -0.139 4.139 11 C -0.154 4.154 12 C -0.070 4.070 13 N -0.298 5.298 14 C -0.007 4.007 15 C -0.015 4.015 16 O -0.374 6.374 17 C -0.156 4.156 18 C -0.183 4.183 19 C -0.159 4.159 20 H 0.072 0.928 21 H 0.032 0.968 22 H 0.029 0.971 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.165 0.835 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.227 0.773 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 18.979 -13.235 -0.522 23.144 hybrid contribution -0.165 0.072 1.359 1.371 sum 18.814 -13.163 0.837 22.977 Atomic orbital electron populations 1.69926 1.06322 1.26793 1.51549 1.25048 0.94734 0.99221 0.94638 0.86754 0.80369 0.83530 0.78506 1.20303 1.21469 1.18987 1.21201 0.89736 0.94372 1.50403 0.91177 1.19571 0.96889 0.92552 0.96156 1.21411 0.91978 0.99705 1.00783 1.21643 0.97237 0.94691 1.01873 1.22008 0.86676 0.98297 0.99985 1.60844 1.08186 1.14815 1.45921 1.22324 0.96848 0.89055 0.92458 1.22573 0.97741 0.95221 0.85991 1.86422 1.83433 1.50624 1.16915 1.22928 0.95014 0.98571 0.99114 1.22803 0.97111 0.97814 1.00550 1.22982 0.96777 0.99390 0.96722 0.92833 0.96765 0.97077 0.92944 0.93167 0.92770 0.91776 0.95648 0.91331 0.83512 0.93341 0.93288 0.77349 0.89116 0.91612 0.90520 0.91046 0.91698 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.41 27.47 -169.99 -4.67 17.75 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 10 C -0.10 -2.07 5.15 -26.73 -0.14 -2.20 16 11 C -0.12 -1.98 5.52 -26.73 -0.15 -2.13 16 12 C 0.06 0.86 5.26 -3.82 -0.02 0.84 16 13 N -0.67 -8.79 6.32 -99.13 -0.63 -9.42 16 14 C 0.09 0.93 0.88 -130.79 -0.12 0.82 16 15 C 0.06 0.64 6.04 37.16 0.22 0.86 16 16 O -0.57 -5.79 13.09 -35.23 -0.46 -6.25 16 17 C -0.12 -1.17 7.47 -25.92 -0.19 -1.36 16 18 C -0.14 -1.21 7.73 -25.92 -0.20 -1.41 16 19 C -0.12 -1.20 6.37 -25.92 -0.17 -1.37 16 20 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 21 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 22 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.37 7.16 -51.93 -0.37 0.00 16 28 H 0.07 0.98 7.28 -51.93 -0.38 0.61 16 29 H 0.35 4.73 8.30 -39.30 -0.33 4.40 16 30 H 0.05 0.50 7.27 -51.93 -0.38 0.12 16 31 H 0.05 0.40 7.32 -51.93 -0.38 0.02 16 32 H 0.38 2.24 9.12 45.56 0.42 2.66 16 33 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.08 0.56 7.61 -51.93 -0.40 0.17 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -32.18 303.51 -7.67 -39.86 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.97 Total: 1.62 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.30 Total: -20.25 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.15 Total: -37.30 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.46 Total: -6.25 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.18 -7.67 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385321305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.764 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds