Wall clock time and date at job start Mon Mar 30 2020 03:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99963 * 2 1 4 4 H 1.48496 * 109.46942 * 270.00467 * 3 2 1 5 5 H 1.48502 * 109.46825 * 30.00503 * 3 2 1 6 6 H 1.48496 * 109.47146 * 150.00509 * 3 2 1 7 7 C 1.37876 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47073 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46833 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46918 * 174.86557 * 12 11 10 14 14 C 1.47893 * 110.99972 * 175.71081 * 13 12 11 15 15 C 1.53993 * 107.05882 * 214.15389 * 14 13 12 16 16 C 1.54598 * 105.13705 * 1.22244 * 15 14 13 17 17 H 1.09001 * 110.72609 * 263.59627 * 16 15 14 18 18 C 1.53002 * 110.72148 * 140.49456 * 16 15 14 19 19 O 1.42908 * 109.47026 * 66.45333 * 18 16 15 20 20 C 1.48528 * 111.00158 * 58.31188 * 13 12 11 21 21 H 0.96993 * 120.00542 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47406 * 60.00407 * 9 7 2 23 23 H 1.08999 * 109.47270 * 299.99867 * 9 7 2 24 24 H 1.09006 * 109.46611 * 60.00316 * 10 9 7 25 25 H 1.08996 * 109.46994 * 300.00375 * 10 9 7 26 26 H 1.09006 * 109.46415 * 60.00548 * 11 10 9 27 27 H 1.08995 * 109.47352 * 300.00498 * 11 10 9 28 28 H 1.09007 * 109.47331 * 294.85845 * 12 11 10 29 29 H 1.09000 * 109.47148 * 54.86366 * 12 11 10 30 30 H 1.09001 * 109.92196 * 333.50749 * 14 13 12 31 31 H 1.09009 * 109.91961 * 94.60286 * 14 13 12 32 32 H 1.08995 * 110.31377 * 120.14013 * 15 14 13 33 33 H 1.09009 * 110.30637 * 242.31239 * 15 14 13 34 34 H 1.08999 * 109.47134 * 186.45315 * 18 16 15 35 35 H 1.09002 * 109.47033 * 306.45912 * 18 16 15 36 36 H 0.96695 * 113.99727 * 179.97438 * 19 18 16 37 37 H 1.09005 * 110.67045 * 278.15868 * 20 13 12 38 38 H 1.09002 * 110.67099 * 41.28987 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4747 -6.1500 -0.0005 13 7 1.7445 -7.4186 0.1240 14 6 2.6650 -8.5719 0.0242 15 6 1.8964 -9.7035 -0.6830 16 6 0.5053 -9.1089 -1.0015 17 1 -0.2172 -9.3846 -0.2334 18 6 0.0254 -9.5633 -2.3815 19 8 -0.2090 -10.9729 -2.3639 20 6 0.7688 -7.5822 -0.9838 21 1 -0.4850 0.8399 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8720 -3.6043 0.8896 25 1 2.8720 -3.6043 -0.8905 26 1 0.8535 -5.0451 -0.8898 27 1 0.8540 -5.0446 0.8902 28 1 3.0385 -6.1455 -0.9334 29 1 3.1610 -6.0417 0.8394 30 1 3.5426 -8.2971 -0.5608 31 1 2.9688 -8.8919 1.0210 32 1 2.4055 -9.9890 -1.6034 33 1 1.7974 -10.5644 -0.0217 34 1 -0.8994 -9.0443 -2.6336 35 1 0.7871 -9.3309 -3.1257 36 1 -0.5165 -11.3310 -3.2078 37 1 -0.1501 -7.0357 -0.7711 38 1 1.2018 -7.2555 -1.9293 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385349105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:56 Heat of formation + Delta-G solvation = -73.985427 kcal Electronic energy + Delta-G solvation = -15561.751946 eV Core-core repulsion = 13016.974491 eV Total energy + Delta-G solvation = -2544.777456 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.35279 -36.91220 -34.90250 -32.94177 -31.43553 -29.61628 -27.84352 -25.57560 -24.13455 -21.94485 -20.55270 -20.48280 -19.73730 -17.54130 -16.38721 -16.10775 -15.57743 -15.10534 -14.43187 -14.41137 -13.95752 -13.57711 -13.17350 -12.78567 -12.34382 -12.09096 -11.87073 -11.44295 -11.28945 -11.24168 -11.08988 -10.94813 -10.63287 -10.50175 -10.44445 -10.34342 -10.19470 -9.60406 -9.23683 -8.98433 -8.36195 -8.31001 -5.96307 -3.98485 3.33659 3.39694 3.43407 3.79478 4.11881 4.48619 4.56145 4.66825 4.84616 5.10992 5.16441 5.29070 5.35845 5.39067 5.43953 5.50518 5.56699 5.64366 5.78375 5.91232 5.92696 6.03057 6.13573 6.17099 6.30385 6.51536 6.82530 6.95276 6.98857 7.10219 7.26243 7.34726 7.72738 7.88807 8.04860 8.47795 9.09035 9.65289 11.15071 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055001 B = 0.003905 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.958555 B = 7168.518531 C = 7503.176811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.048 3.952 13 N -0.517 5.517 14 C 0.032 3.968 15 C -0.118 4.118 16 C -0.094 4.094 17 H 0.089 0.911 18 C 0.084 3.916 19 O -0.573 6.573 20 C 0.043 3.957 21 H 0.260 0.740 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.378 0.622 37 H 0.088 0.912 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 -19.557 -4.411 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.080 4.080 13 N -0.241 5.241 14 C -0.096 4.096 15 C -0.156 4.156 16 C -0.113 4.113 17 H 0.107 0.893 18 C 0.006 3.994 19 O -0.378 6.378 20 C -0.085 4.085 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.224 0.776 37 H 0.106 0.894 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.653 -19.339 -3.266 19.683 hybrid contribution 0.715 1.000 -1.416 1.876 sum 2.368 -18.339 -4.682 19.075 Atomic orbital electron populations 1.69964 1.06044 1.26511 1.51060 1.25034 0.94845 0.99224 0.95435 0.86610 0.79874 0.83565 0.78046 1.20721 1.21229 1.19892 1.21295 0.93022 0.91225 1.50290 0.92775 1.19090 0.94024 0.91339 0.97132 1.21601 0.99094 0.93962 1.00075 1.21685 0.97881 0.93785 1.01973 1.22429 0.96493 0.88930 1.00124 1.64802 1.14520 1.02060 1.42693 1.22906 0.94864 0.91259 1.00580 1.22363 0.94903 0.97960 1.00358 1.22077 0.97778 0.94916 0.96500 0.89259 1.22183 0.99086 0.81324 0.96840 1.86480 1.89975 1.22574 1.38801 1.23174 0.97688 0.94305 0.93344 0.93057 0.96782 0.96586 0.93392 0.93724 0.92728 0.91554 0.95071 0.90740 0.93936 0.90461 0.91678 0.90994 0.93268 0.93667 0.77567 0.89396 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.12 -2.03 4.89 -26.73 -0.13 -2.16 16 12 C 0.05 0.71 4.84 -3.82 -0.02 0.70 16 13 N -0.52 -7.09 5.35 -230.45 -1.23 -8.33 16 14 C 0.03 0.37 6.70 -2.76 -0.02 0.35 16 15 C -0.12 -1.23 6.36 -25.37 -0.16 -1.40 16 16 C -0.09 -1.01 3.34 -88.76 -0.30 -1.31 16 17 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 18 C 0.08 0.76 6.38 37.16 0.24 1.00 16 19 O -0.57 -5.23 13.50 -35.23 -0.48 -5.71 16 20 C 0.04 0.53 4.81 -1.90 -0.01 0.52 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.95 7.18 -51.93 -0.37 0.58 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.03 0.45 7.97 -51.93 -0.41 0.04 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.48 7.67 -51.93 -0.40 0.08 16 31 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 32 H 0.06 0.64 7.80 -51.93 -0.41 0.24 16 33 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.38 8.07 -51.93 -0.42 -0.04 16 36 H 0.38 1.70 9.12 45.56 0.42 2.11 16 37 H 0.09 1.12 7.77 -51.93 -0.40 0.72 16 38 H 0.05 0.56 7.93 -51.93 -0.41 0.15 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -31.90 306.00 -8.65 -40.54 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -6.18 Total: -3.19 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -1.08 Total: -18.19 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.50 Total: -35.02 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.48 Total: -5.71 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.90 -8.65 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385349105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.444 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds