Wall clock time and date at job start Mon Mar 30 2020 03:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99963 * 2 1 4 4 H 1.48496 * 109.46942 * 270.00467 * 3 2 1 5 5 H 1.48502 * 109.46825 * 30.00503 * 3 2 1 6 6 H 1.48496 * 109.47146 * 150.00509 * 3 2 1 7 7 C 1.37876 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47073 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46833 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46918 * 174.86557 * 12 11 10 14 14 C 1.47893 * 110.99972 * 175.71081 * 13 12 11 15 15 C 1.53993 * 107.05882 * 214.15389 * 14 13 12 16 16 C 1.54598 * 105.13705 * 1.22244 * 15 14 13 17 17 H 1.09001 * 110.72609 * 263.59627 * 16 15 14 18 18 C 1.53002 * 110.72148 * 140.49456 * 16 15 14 19 19 O 1.42908 * 109.47026 * 66.45333 * 18 16 15 20 20 C 1.48528 * 111.00158 * 58.31188 * 13 12 11 21 21 H 0.96993 * 120.00542 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47406 * 60.00407 * 9 7 2 23 23 H 1.08999 * 109.47270 * 299.99867 * 9 7 2 24 24 H 1.09006 * 109.46611 * 60.00316 * 10 9 7 25 25 H 1.08996 * 109.46994 * 300.00375 * 10 9 7 26 26 H 1.09006 * 109.46415 * 60.00548 * 11 10 9 27 27 H 1.08995 * 109.47352 * 300.00498 * 11 10 9 28 28 H 1.09007 * 109.47331 * 294.85845 * 12 11 10 29 29 H 1.09000 * 109.47148 * 54.86366 * 12 11 10 30 30 H 1.09001 * 109.92196 * 333.50749 * 14 13 12 31 31 H 1.09009 * 109.91961 * 94.60286 * 14 13 12 32 32 H 1.08995 * 110.31377 * 120.14013 * 15 14 13 33 33 H 1.09009 * 110.30637 * 242.31239 * 15 14 13 34 34 H 1.08999 * 109.47134 * 186.45315 * 18 16 15 35 35 H 1.09002 * 109.47033 * 306.45912 * 18 16 15 36 36 H 0.96695 * 113.99727 * 179.97438 * 19 18 16 37 37 H 1.09005 * 110.67045 * 278.15868 * 20 13 12 38 38 H 1.09002 * 110.67099 * 41.28987 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4747 -6.1500 -0.0005 13 7 1.7445 -7.4186 0.1240 14 6 2.6650 -8.5719 0.0242 15 6 1.8964 -9.7035 -0.6830 16 6 0.5053 -9.1089 -1.0015 17 1 -0.2172 -9.3846 -0.2334 18 6 0.0254 -9.5633 -2.3815 19 8 -0.2090 -10.9729 -2.3639 20 6 0.7688 -7.5822 -0.9838 21 1 -0.4850 0.8399 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8720 -3.6043 0.8896 25 1 2.8720 -3.6043 -0.8905 26 1 0.8535 -5.0451 -0.8898 27 1 0.8540 -5.0446 0.8902 28 1 3.0385 -6.1455 -0.9334 29 1 3.1610 -6.0417 0.8394 30 1 3.5426 -8.2971 -0.5608 31 1 2.9688 -8.8919 1.0210 32 1 2.4055 -9.9890 -1.6034 33 1 1.7974 -10.5644 -0.0217 34 1 -0.8994 -9.0443 -2.6336 35 1 0.7871 -9.3309 -3.1257 36 1 -0.5165 -11.3310 -3.2078 37 1 -0.1501 -7.0357 -0.7711 38 1 1.2018 -7.2555 -1.9293 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385349105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:56 Heat of formation + Delta-G solvation = -96.943388 kcal Electronic energy + Delta-G solvation = -15562.747478 eV Core-core repulsion = 13016.974491 eV Total energy + Delta-G solvation = -2545.772987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30599 -37.72042 -36.50108 -34.72302 -32.89747 -30.70438 -29.37561 -26.81989 -25.60881 -23.32361 -21.98636 -21.60345 -20.94544 -18.43925 -18.21230 -17.21235 -16.69543 -16.43552 -16.32030 -15.40182 -14.95121 -14.65267 -14.44617 -14.23929 -13.90566 -13.62814 -13.18097 -12.87005 -12.75064 -12.67140 -12.25964 -12.20671 -12.10660 -11.99394 -11.85823 -11.46185 -11.34552 -11.29947 -10.98321 -10.86446 -10.55494 -9.39403 -8.19894 -6.31526 1.39591 1.41405 1.52653 2.40949 2.92505 3.12767 3.28281 3.67036 3.82477 4.04235 4.09186 4.20903 4.30081 4.43976 4.50120 4.51901 4.57230 4.61627 4.68720 4.77137 4.85418 4.88170 4.95962 5.03899 5.14358 5.24300 5.27300 5.31783 5.34315 5.54374 5.76912 5.86227 5.94476 6.08518 6.25787 6.85945 6.90743 7.37841 8.92036 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055001 B = 0.003905 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.958555 B = 7168.518531 C = 7503.176811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.104 4.104 12 C 0.058 3.942 13 N -0.533 5.533 14 C 0.032 3.968 15 C -0.112 4.112 16 C -0.092 4.092 17 H 0.077 0.923 18 C 0.087 3.913 19 O -0.589 6.589 20 C 0.041 3.959 21 H 0.264 0.736 22 H -0.010 1.010 23 H -0.012 1.012 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.397 0.603 37 H 0.077 0.923 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 -20.057 -5.000 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.142 4.142 12 C -0.070 4.070 13 N -0.257 5.257 14 C -0.096 4.096 15 C -0.150 4.150 16 C -0.111 4.111 17 H 0.095 0.905 18 C 0.009 3.991 19 O -0.398 6.398 20 C -0.086 4.086 21 H 0.072 0.928 22 H 0.008 0.992 23 H 0.007 0.993 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.247 0.753 37 H 0.095 0.905 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.980 -19.867 -3.869 20.459 hybrid contribution 0.247 1.117 -1.232 1.682 sum 3.227 -18.750 -5.101 19.698 Atomic orbital electron populations 1.70100 1.07859 1.27782 1.51731 1.26026 0.95806 1.03491 0.94717 0.85424 0.78653 0.78284 0.78550 1.19649 1.20702 1.18700 1.21747 0.93584 0.92515 1.50490 0.92169 1.19017 0.94495 0.93281 0.94593 1.21406 0.97990 0.93581 1.00501 1.21500 0.98008 0.93340 1.01362 1.22227 0.95579 0.88479 1.00686 1.64758 1.15203 1.02144 1.43576 1.22956 0.94772 0.90681 1.01187 1.22334 0.94461 0.97526 1.00705 1.22024 0.97865 0.93764 0.97457 0.90453 1.22102 0.99678 0.81537 0.95751 1.86422 1.90196 1.22448 1.40713 1.23169 0.96969 0.95462 0.93050 0.92764 0.99190 0.99317 0.93042 0.93032 0.92832 0.92760 0.94262 0.90440 0.93253 0.90049 0.90714 0.90738 0.92657 0.92647 0.75267 0.90490 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -4.06 5.15 30.60 0.16 -3.91 16 11 C -0.10 -3.65 4.89 30.59 0.15 -3.51 16 12 C 0.06 1.66 4.84 86.30 0.42 2.08 16 13 N -0.53 -14.01 5.35 -883.02 -4.73 -18.74 16 14 C 0.03 0.67 6.70 86.45 0.58 1.25 16 15 C -0.11 -2.14 6.36 31.47 0.20 -1.94 16 16 C -0.09 -1.87 3.34 -9.59 -0.03 -1.91 16 17 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 18 C 0.09 1.43 6.38 71.98 0.46 1.89 16 19 O -0.59 -9.60 13.50 -148.98 -2.01 -11.61 16 20 C 0.04 0.98 4.81 86.65 0.42 1.40 16 21 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 22 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 23 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 24 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 1.87 7.18 -2.38 -0.02 1.85 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.06 7.97 -2.38 -0.02 1.04 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.05 0.99 7.67 -2.39 -0.02 0.97 16 31 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.07 1.29 7.80 -2.39 -0.02 1.27 16 33 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.80 8.07 -2.39 -0.02 0.78 16 36 H 0.40 2.73 9.12 -74.06 -0.68 2.06 16 37 H 0.08 1.97 7.77 -2.38 -0.02 1.95 16 38 H 0.05 1.15 7.93 -2.39 -0.02 1.14 16 Total: -1.00 -67.78 306.00 -0.91 -68.69 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.33 Total: 7.10 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 3.19 Total: -34.57 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -4.44 Total: -76.50 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -2.01 Total: -11.61 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.78 -0.91 -68.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385349105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.256 kcal (2) G-P(sol) polarization free energy of solvation -67.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds