Wall clock time and date at job start Mon Mar 30 2020 02:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48494 * 109.47051 * 239.99903 * 3 2 1 5 5 H 1.48501 * 109.46677 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47226 * 119.99318 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 H 1.08997 * 110.88604 * 325.70447 * 12 11 10 14 14 C 1.55153 * 111.00401 * 201.81900 * 12 11 10 15 15 C 1.54368 * 102.92290 * 206.45314 * 14 12 11 16 16 N 1.47026 * 107.28622 * 22.14019 * 15 14 12 17 17 C 1.34775 * 125.64836 * 181.12620 * 16 15 14 18 18 N 1.34780 * 119.99784 * 359.96057 * 17 16 15 19 19 O 1.21575 * 120.00062 * 179.97438 * 17 16 15 20 20 C 1.47425 * 108.70347 * 1.09213 * 16 15 14 21 21 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 23 23 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 24 24 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 25 25 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 26 26 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 27 27 H 1.08995 * 110.72291 * 324.79362 * 14 12 11 28 28 H 1.09006 * 110.71793 * 88.05945 * 14 12 11 29 29 H 1.09005 * 109.84754 * 262.73708 * 15 14 12 30 30 H 1.08998 * 110.03092 * 141.65412 * 15 14 12 31 31 H 0.97000 * 120.00042 * 359.97438 * 18 17 16 32 32 H 0.96998 * 119.99523 * 179.97438 * 18 17 16 33 33 H 1.08998 * 110.36519 * 217.03062 * 20 16 15 34 34 H 1.08995 * 110.36608 * 94.71014 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 1 3.3335 -5.8488 -0.5721 14 6 1.7400 -7.3546 -0.5359 15 6 2.5315 -8.4907 0.1466 16 7 3.1698 -7.9213 1.3424 17 6 3.9682 -8.5880 2.1994 18 7 4.2391 -9.8920 1.9925 19 8 4.4439 -8.0132 3.1593 20 6 2.7926 -6.5001 1.4482 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8718 -3.6043 0.8906 25 1 2.8718 -3.6044 -0.8894 26 1 0.8744 -4.9841 0.7828 27 1 0.6927 -7.3798 -0.2351 28 1 1.8325 -7.4168 -1.6203 29 1 3.2928 -8.8721 -0.5340 30 1 1.8555 -9.2957 0.4349 31 1 3.8590 -10.3507 1.2269 32 1 4.8140 -10.3716 2.6091 33 1 3.6315 -5.9116 1.8197 34 1 1.9282 -6.3847 2.1020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393295955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:07 Heat of formation + Delta-G solvation = -37.268655 kcal Electronic energy + Delta-G solvation = -15492.687072 eV Core-core repulsion = 12845.961432 eV Total energy + Delta-G solvation = -2646.725640 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.25994 -37.94337 -35.18910 -33.75958 -32.79969 -30.81307 -29.36739 -27.26226 -24.26364 -23.24031 -20.93468 -20.45441 -20.16472 -18.35024 -17.08902 -16.49734 -15.99683 -15.16378 -15.01121 -14.53388 -14.36235 -13.79515 -13.26503 -13.07661 -12.75782 -12.61501 -12.19784 -11.67351 -11.53986 -11.10046 -10.90941 -10.78738 -10.53414 -10.37494 -10.05005 -9.86799 -9.38893 -9.17025 -8.73441 -8.35247 -7.92864 -5.99545 -4.02225 2.62816 3.08711 3.34813 3.38963 3.41582 4.04327 4.36954 4.49333 4.62939 4.79349 4.98133 5.16983 5.31841 5.36674 5.40813 5.76081 5.81091 5.93883 6.03003 6.11785 6.29404 6.38350 6.66345 6.77793 6.94023 7.39521 7.69383 7.75192 7.76775 7.89339 8.05836 8.42485 8.48584 9.04643 9.61727 11.11839 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.049247 B = 0.004536 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.420822 B = 6170.952648 C = 6540.697169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.063 3.937 11 N -0.674 5.674 12 C 0.077 3.923 13 H 0.091 0.909 14 C -0.120 4.120 15 C 0.099 3.901 16 N -0.633 5.633 17 C 0.721 3.279 18 N -0.867 5.867 19 O -0.594 6.594 20 C 0.095 3.905 21 H 0.261 0.739 22 H 0.026 0.974 23 H 0.014 0.986 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.340 0.660 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.396 0.604 32 H 0.413 0.587 33 H 0.078 0.922 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.345 -19.780 -0.845 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.065 4.065 11 N -0.304 5.304 12 C -0.035 4.035 13 H 0.109 0.891 14 C -0.158 4.158 15 C -0.024 4.024 16 N -0.372 5.372 17 C 0.421 3.579 18 N -0.435 5.435 19 O -0.472 6.472 20 C -0.031 4.031 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.033 0.967 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.159 0.841 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.223 0.777 32 H 0.245 0.755 33 H 0.096 0.904 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.376 -19.144 -0.893 19.658 hybrid contribution 0.815 0.442 0.793 1.220 sum 5.192 -18.703 -0.100 19.410 Atomic orbital electron populations 1.69959 1.06038 1.26734 1.50537 1.24992 0.94840 0.99217 0.95236 0.86643 0.79568 0.83076 0.78625 1.20222 1.21270 1.20256 1.21132 0.92979 0.90997 1.51081 0.92770 1.19070 0.94002 0.90396 0.97779 1.22254 0.97116 0.88182 0.98957 1.60702 1.18555 1.01742 1.49422 1.22795 0.96036 0.91535 0.93184 0.89122 1.22640 0.99877 0.92603 1.00710 1.22083 0.96318 0.97368 0.86680 1.47496 1.50662 1.12181 1.26858 1.15496 0.78889 0.81556 0.81979 1.42970 1.57004 1.10271 1.33296 1.90979 1.57037 1.67981 1.31190 1.23040 1.00848 0.79985 0.99203 0.92920 0.95600 0.96724 0.96232 0.92128 0.84127 0.89951 0.89614 0.91748 0.91721 0.77655 0.75504 0.90378 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 10 C 0.06 1.28 5.51 -3.82 -0.02 1.26 16 11 N -0.67 -11.14 6.39 -104.46 -0.67 -11.81 16 12 C 0.08 1.02 3.34 -65.56 -0.22 0.80 16 13 H 0.09 1.25 7.87 -51.93 -0.41 0.84 16 14 C -0.12 -1.20 6.65 -24.87 -0.17 -1.36 16 15 C 0.10 0.85 6.15 -3.04 -0.02 0.83 16 16 N -0.63 -7.72 3.33 -176.21 -0.59 -8.30 16 17 C 0.72 9.74 8.76 -86.92 -0.76 8.98 16 18 N -0.87 -7.19 8.83 27.63 0.24 -6.94 16 19 O -0.59 -10.92 17.43 5.30 0.09 -10.83 16 20 C 0.09 1.31 6.52 -2.53 -0.02 1.29 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 26 H 0.34 5.46 8.24 -39.29 -0.32 5.14 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.40 2.10 7.81 -40.82 -0.32 1.79 16 32 H 0.41 2.85 8.93 -40.82 -0.36 2.49 16 33 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 34 H 0.07 0.94 7.77 -51.93 -0.40 0.54 16 LS Contribution 286.65 15.07 4.32 4.32 Total: -1.00 -33.76 286.65 -7.80 -41.56 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.16 Total: 2.67 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.76 Total: -1.24 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.27 Total: -53.21 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.76 -7.80 -41.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393295955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.291 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds