Wall clock time and date at job start Mon Mar 30 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00646 * 2 1 4 4 H 1.48493 * 109.47474 * 270.00264 * 3 2 1 5 5 H 1.48505 * 109.46605 * 30.00259 * 3 2 1 6 6 H 1.48499 * 109.47016 * 149.99833 * 3 2 1 7 7 C 1.37884 * 119.99509 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99853 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46939 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47180 * 180.02562 * 10 9 7 12 12 C 1.46897 * 110.99974 * 179.97438 * 11 10 9 13 13 H 1.08993 * 110.78200 * 36.78412 * 12 11 10 14 14 C 1.55165 * 110.71796 * 160.02151 * 12 11 10 15 15 C 1.54915 * 101.57980 * 153.86496 * 14 12 11 16 16 N 1.47425 * 104.83334 * 322.99105 * 15 14 12 17 17 C 1.34776 * 125.64906 * 204.09456 * 16 15 14 18 18 N 1.34772 * 119.99978 * 0.03730 * 17 16 15 19 19 O 1.21588 * 119.99628 * 180.02562 * 17 16 15 20 20 C 1.47022 * 108.70334 * 24.12789 * 16 15 14 21 21 H 0.97001 * 119.99469 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47274 * 60.00400 * 9 7 2 23 23 H 1.08994 * 109.47050 * 300.00145 * 9 7 2 24 24 H 1.09002 * 109.47371 * 59.99864 * 10 9 7 25 25 H 1.09006 * 109.46860 * 299.99985 * 10 9 7 26 26 H 1.00896 * 111.00116 * 56.04367 * 11 10 9 27 27 H 1.08995 * 111.00547 * 271.93828 * 14 12 11 28 28 H 1.09001 * 111.00003 * 35.79407 * 14 12 11 29 29 H 1.08997 * 110.36462 * 204.15099 * 15 14 12 30 30 H 1.08997 * 110.36247 * 81.82766 * 15 14 12 31 31 H 0.96998 * 120.00011 * 0.02562 * 18 17 16 32 32 H 0.96997 * 120.00034 * 179.97438 * 18 17 16 33 33 H 1.08997 * 109.88723 * 239.52626 * 20 16 15 34 34 H 1.08998 * 109.88661 * 118.35607 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5104 -4.9343 -0.0012 12 6 2.4348 -6.0760 -0.0018 13 1 3.3124 -5.8633 0.6085 14 6 1.7202 -7.3612 0.4935 15 6 2.5534 -8.4674 -0.2007 16 7 2.8922 -7.9109 -1.5232 17 6 3.1937 -8.6284 -2.6236 18 7 3.2007 -9.9749 -2.5689 19 8 3.4590 -8.0607 -3.6655 20 6 2.8476 -6.4435 -1.4427 21 1 -0.4849 0.8401 -0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6245 -2.5571 0.8896 24 1 2.8717 -3.6045 0.8894 25 1 2.8716 -3.6045 -0.8906 26 1 0.8742 -4.9842 -0.7827 27 1 1.7812 -7.4488 1.5782 28 1 0.6831 -7.3851 0.1587 29 1 1.9606 -9.3754 -0.3118 30 1 3.4602 -8.6725 0.3682 31 1 2.9885 -10.4277 -1.7378 32 1 3.4173 -10.4913 -3.3610 33 1 2.1136 -6.0556 -2.1489 34 1 3.8318 -6.0300 -1.6631 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393295957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:09 Heat of formation + Delta-G solvation = -35.978407 kcal Electronic energy + Delta-G solvation = -15509.700068 eV Core-core repulsion = 12863.030377 eV Total energy + Delta-G solvation = -2646.669691 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.26405 -37.95832 -35.17802 -33.75379 -32.79678 -30.80540 -29.35845 -27.24719 -24.28791 -23.22745 -20.98825 -20.44981 -20.10571 -18.37781 -17.12686 -16.46918 -16.00280 -15.13272 -14.99427 -14.53944 -14.36156 -13.88498 -13.24823 -13.05910 -12.75319 -12.43633 -12.23599 -11.70172 -11.57214 -11.09178 -10.93633 -10.81852 -10.51072 -10.36372 -10.04892 -9.86321 -9.38989 -9.15510 -8.72753 -8.35530 -7.92839 -5.99573 -4.02168 2.63532 3.09853 3.33305 3.39397 3.42602 4.03927 4.39022 4.49101 4.55186 4.76895 5.06680 5.17716 5.29267 5.36740 5.37282 5.76265 5.81294 5.95954 6.00711 6.15215 6.29355 6.37293 6.66756 6.77427 6.94179 7.40170 7.69713 7.75327 7.77339 7.89522 8.05999 8.42521 8.49567 9.04928 9.61792 11.11891 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.050177 B = 0.004527 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.892384 B = 6183.482565 C = 6481.345277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.062 3.938 11 N -0.676 5.676 12 C 0.078 3.922 13 H 0.092 0.908 14 C -0.121 4.121 15 C 0.098 3.902 16 N -0.632 5.632 17 C 0.720 3.280 18 N -0.867 5.867 19 O -0.594 6.594 20 C 0.096 3.904 21 H 0.261 0.739 22 H 0.014 0.986 23 H 0.026 0.974 24 H 0.061 0.939 25 H 0.019 0.981 26 H 0.340 0.660 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.395 0.605 32 H 0.413 0.587 33 H 0.068 0.932 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -19.909 0.852 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.065 4.065 11 N -0.306 5.306 12 C -0.034 4.034 13 H 0.110 0.890 14 C -0.159 4.159 15 C -0.026 4.026 16 N -0.372 5.372 17 C 0.420 3.580 18 N -0.436 5.436 19 O -0.472 6.472 20 C -0.029 4.029 21 H 0.070 0.930 22 H 0.033 0.967 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.037 0.963 26 H 0.159 0.841 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.223 0.777 32 H 0.245 0.755 33 H 0.087 0.913 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.389 -19.266 0.863 19.779 hybrid contribution 0.766 0.472 -0.864 1.247 sum 5.155 -18.794 -0.001 19.488 Atomic orbital electron populations 1.69972 1.06046 1.26614 1.50615 1.25000 0.94840 0.99236 0.95256 0.86582 0.79826 0.83425 0.78095 1.20683 1.21202 1.19870 1.21168 0.93002 0.90980 1.50953 0.92718 1.19076 0.94022 0.90430 0.97784 1.22248 0.97132 0.88230 0.98929 1.60737 1.18490 1.01769 1.49557 1.22680 0.95946 0.91826 0.92981 0.88955 1.22796 0.99624 0.92764 1.00750 1.22363 0.98988 0.97571 0.83640 1.47522 1.72958 1.07457 1.09243 1.15493 0.78013 0.81695 0.82775 1.42975 1.78339 1.05347 1.16946 1.90984 1.56711 1.70193 1.29263 1.22799 1.02266 0.78566 0.99281 0.92980 0.96745 0.95596 0.92099 0.96251 0.84086 0.89415 0.90064 0.91083 0.91406 0.77663 0.75498 0.91334 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.63 5.23 -27.88 -0.15 0.48 16 10 C 0.06 1.27 5.48 -3.82 -0.02 1.25 16 11 N -0.68 -11.25 6.36 -104.79 -0.67 -11.92 16 12 C 0.08 1.02 3.23 -65.87 -0.21 0.81 16 13 H 0.09 1.20 7.90 -51.93 -0.41 0.79 16 14 C -0.12 -1.20 6.77 -24.57 -0.17 -1.37 16 15 C 0.10 0.82 6.57 -2.53 -0.02 0.81 16 16 N -0.63 -7.74 3.33 -176.24 -0.59 -8.32 16 17 C 0.72 9.78 8.76 -86.92 -0.76 9.02 16 18 N -0.87 -7.20 8.83 27.63 0.24 -6.95 16 19 O -0.59 -11.00 17.51 5.29 0.09 -10.90 16 20 C 0.10 1.35 6.52 -3.06 -0.02 1.33 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 25 H 0.02 0.39 8.13 -51.93 -0.42 -0.03 16 26 H 0.34 5.64 8.15 -39.29 -0.32 5.32 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.43 7.30 -51.93 -0.38 0.05 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.40 2.08 7.31 -40.82 -0.30 1.78 16 32 H 0.41 2.86 8.93 -40.82 -0.36 2.50 16 33 H 0.07 1.07 7.57 -51.93 -0.39 0.67 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 285.59 15.07 4.30 4.30 Total: -1.00 -33.98 285.59 -7.74 -41.72 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.09 Total: 2.78 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.76 Total: -1.21 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.27 Total: -53.41 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.98 -7.74 -41.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393295957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.738 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds