Wall clock time and date at job start Mon Mar 30 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00646 * 2 1 4 4 H 1.48493 * 109.47474 * 270.00264 * 3 2 1 5 5 H 1.48505 * 109.46605 * 30.00259 * 3 2 1 6 6 H 1.48499 * 109.47016 * 149.99833 * 3 2 1 7 7 C 1.37884 * 119.99509 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99853 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46939 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47180 * 180.02562 * 10 9 7 12 12 C 1.46897 * 110.99974 * 179.97438 * 11 10 9 13 13 H 1.08993 * 110.78200 * 36.78412 * 12 11 10 14 14 C 1.55165 * 110.71796 * 160.02151 * 12 11 10 15 15 C 1.54915 * 101.57980 * 153.86496 * 14 12 11 16 16 N 1.47425 * 104.83334 * 322.99105 * 15 14 12 17 17 C 1.34776 * 125.64906 * 204.09456 * 16 15 14 18 18 N 1.34772 * 119.99978 * 0.03730 * 17 16 15 19 19 O 1.21588 * 119.99628 * 180.02562 * 17 16 15 20 20 C 1.47022 * 108.70334 * 24.12789 * 16 15 14 21 21 H 0.97001 * 119.99469 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47274 * 60.00400 * 9 7 2 23 23 H 1.08994 * 109.47050 * 300.00145 * 9 7 2 24 24 H 1.09002 * 109.47371 * 59.99864 * 10 9 7 25 25 H 1.09006 * 109.46860 * 299.99985 * 10 9 7 26 26 H 1.00896 * 111.00116 * 56.04367 * 11 10 9 27 27 H 1.08995 * 111.00547 * 271.93828 * 14 12 11 28 28 H 1.09001 * 111.00003 * 35.79407 * 14 12 11 29 29 H 1.08997 * 110.36462 * 204.15099 * 15 14 12 30 30 H 1.08997 * 110.36247 * 81.82766 * 15 14 12 31 31 H 0.96998 * 120.00011 * 0.02562 * 18 17 16 32 32 H 0.96997 * 120.00034 * 179.97438 * 18 17 16 33 33 H 1.08997 * 109.88723 * 239.52626 * 20 16 15 34 34 H 1.08998 * 109.88661 * 118.35607 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5104 -4.9343 -0.0012 12 6 2.4348 -6.0760 -0.0018 13 1 3.3124 -5.8633 0.6085 14 6 1.7202 -7.3612 0.4935 15 6 2.5534 -8.4674 -0.2007 16 7 2.8922 -7.9109 -1.5232 17 6 3.1937 -8.6284 -2.6236 18 7 3.2007 -9.9749 -2.5689 19 8 3.4590 -8.0607 -3.6655 20 6 2.8476 -6.4435 -1.4427 21 1 -0.4849 0.8401 -0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6245 -2.5571 0.8896 24 1 2.8717 -3.6045 0.8894 25 1 2.8716 -3.6045 -0.8906 26 1 0.8742 -4.9842 -0.7827 27 1 1.7812 -7.4488 1.5782 28 1 0.6831 -7.3851 0.1587 29 1 1.9606 -9.3754 -0.3118 30 1 3.4602 -8.6725 0.3682 31 1 2.9885 -10.4277 -1.7378 32 1 3.4173 -10.4913 -3.3610 33 1 2.1136 -6.0556 -2.1489 34 1 3.8318 -6.0300 -1.6631 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393295957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:08 Heat of formation + Delta-G solvation = -63.677114 kcal Electronic energy + Delta-G solvation = -15510.901174 eV Core-core repulsion = 12863.030377 eV Total energy + Delta-G solvation = -2647.870797 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.27110 -39.08358 -36.64837 -35.05999 -34.43303 -32.13488 -30.68269 -28.64898 -26.03306 -24.36670 -22.52172 -21.77840 -21.07563 -19.27726 -18.52195 -18.04818 -17.12599 -16.62932 -16.26489 -16.04565 -15.65487 -15.01807 -14.81541 -14.31840 -14.13182 -13.80570 -13.42456 -13.12356 -12.96571 -12.74710 -12.66581 -12.32790 -11.91988 -11.76584 -11.51889 -11.37270 -11.19914 -10.77438 -10.56107 -9.69486 -9.32976 -8.19954 -6.31074 1.41074 1.42395 1.53469 1.70190 2.06648 2.41126 3.13859 3.18921 3.39234 3.65966 3.71483 4.09440 4.26972 4.38615 4.52591 4.60355 4.64050 4.77425 4.79345 5.04866 5.08687 5.20311 5.25689 5.46377 5.68594 5.79126 5.92142 5.96035 6.12786 6.25949 6.45737 6.86311 6.90300 7.38232 7.56802 8.92217 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.050177 B = 0.004527 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.892384 B = 6183.482565 C = 6481.345277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.081 3.919 11 N -0.676 5.676 12 C 0.079 3.921 13 H 0.100 0.900 14 C -0.112 4.112 15 C 0.100 3.900 16 N -0.633 5.633 17 C 0.712 3.288 18 N -0.840 5.840 19 O -0.652 6.652 20 C 0.100 3.900 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.001 1.001 24 H 0.066 0.934 25 H 0.016 0.984 26 H 0.339 0.661 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.414 0.586 32 H 0.422 0.578 33 H 0.045 0.955 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.458 -21.360 1.959 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.047 4.047 11 N -0.306 5.306 12 C -0.032 4.032 13 H 0.118 0.882 14 C -0.151 4.151 15 C -0.022 4.022 16 N -0.372 5.372 17 C 0.411 3.589 18 N -0.410 5.410 19 O -0.535 6.535 20 C -0.027 4.027 21 H 0.072 0.928 22 H 0.007 0.993 23 H 0.017 0.983 24 H 0.084 0.916 25 H 0.034 0.966 26 H 0.158 0.842 27 H 0.127 0.873 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.246 0.754 32 H 0.255 0.745 33 H 0.063 0.937 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.386 -20.798 2.018 21.578 hybrid contribution 0.419 0.848 -1.197 1.526 sum 5.805 -19.950 0.821 20.794 Atomic orbital electron populations 1.70104 1.07803 1.27780 1.51476 1.25961 0.95754 1.03334 0.94648 0.85439 0.78733 0.78423 0.78397 1.20009 1.20631 1.18600 1.21629 0.93565 0.92310 1.50845 0.92140 1.18934 0.94369 0.92316 0.95149 1.21850 0.95642 0.88275 0.98969 1.60688 1.18911 1.01426 1.49582 1.22765 0.96059 0.91794 0.92626 0.88237 1.22788 0.99180 0.91001 1.02087 1.22627 1.00261 0.97873 0.81432 1.47518 1.72556 1.06633 1.10472 1.15777 0.77882 0.83017 0.82179 1.42699 1.76666 1.03363 1.18307 1.90942 1.59326 1.71686 1.31554 1.22587 1.00647 0.80179 0.99276 0.92753 0.99304 0.98277 0.91560 0.96563 0.84247 0.87346 0.90581 0.87806 0.89079 0.75429 0.74486 0.93671 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -31.30 9.11 25.60 0.23 -31.07 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.59 5.23 29.85 0.16 1.74 16 10 C 0.08 3.35 5.48 86.30 0.47 3.82 16 11 N -0.68 -22.52 6.36 -485.44 -3.09 -25.61 16 12 C 0.08 1.97 3.23 46.11 0.15 2.12 16 13 H 0.10 2.39 7.90 -2.39 -0.02 2.37 16 14 C -0.11 -1.91 6.77 31.99 0.22 -1.69 16 15 C 0.10 1.31 6.57 86.86 0.57 1.88 16 16 N -0.63 -14.47 3.33 -829.76 -2.76 -17.23 16 17 C 0.71 18.51 8.76 179.06 1.57 20.08 16 18 N -0.84 -11.79 8.83 -184.75 -1.63 -13.43 16 19 O -0.65 -24.51 17.51 -3.99 -0.07 -24.58 16 20 C 0.10 2.79 6.52 86.73 0.57 3.36 16 21 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 22 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 23 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 24 H 0.07 2.65 8.09 -2.39 -0.02 2.63 16 25 H 0.02 0.67 8.13 -2.38 -0.02 0.65 16 26 H 0.34 11.51 8.15 -89.70 -0.73 10.78 16 27 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 0.74 7.30 -2.39 -0.02 0.73 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.41 2.75 7.31 -92.71 -0.68 2.07 16 32 H 0.42 4.91 8.93 -92.71 -0.83 4.08 16 33 H 0.04 1.46 7.57 -2.39 -0.02 1.45 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -75.91 285.59 -1.96 -77.87 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -1.12 Total: 12.53 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 4.40 Total: 0.75 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -7.19 Total: -113.24 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.07 Total: -24.58 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -75.91 -1.96 -77.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393295957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.197 kcal (2) G-P(sol) polarization free energy of solvation -75.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds