Wall clock time and date at job start Mon Mar 30 2020 03:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00226 * 2 1 4 4 H 1.48495 * 109.47030 * 240.00400 * 3 2 1 5 5 H 1.48500 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47330 * 119.99981 * 3 2 1 7 7 C 1.37876 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99919 * 175.05975 * 7 2 1 9 9 C 1.50699 * 120.00005 * 355.32736 * 7 2 1 10 10 C 1.53001 * 115.55413 * 279.20430 * 9 7 2 11 11 O 1.42901 * 109.47004 * 294.87593 * 10 9 7 12 12 C 1.42906 * 113.99458 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.46630 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46951 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46951 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.46951 * 180.02562 * 15 14 13 17 17 N 1.46896 * 109.47123 * 179.97438 * 16 15 14 18 18 C 1.53007 * 117.49630 * 133.50089 * 9 7 2 19 19 C 1.53001 * 117.49575 * 64.88086 * 9 7 2 20 20 H 0.97002 * 119.99638 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46907 * 54.87172 * 10 9 7 22 22 H 1.09000 * 109.47219 * 174.87152 * 10 9 7 23 23 H 1.09000 * 109.47257 * 299.99623 * 12 11 10 24 24 H 1.08996 * 109.47193 * 60.00399 * 12 11 10 25 25 H 1.09002 * 109.47528 * 300.00036 * 13 12 11 26 26 H 1.09002 * 109.47336 * 60.00233 * 13 12 11 27 27 H 1.09000 * 109.47237 * 299.99896 * 14 13 12 28 28 H 1.09002 * 109.46769 * 60.00058 * 14 13 12 29 29 H 1.09000 * 109.47065 * 300.00001 * 15 14 13 30 30 H 1.09002 * 109.47336 * 60.00405 * 15 14 13 31 31 H 1.09000 * 109.47237 * 299.99896 * 16 15 14 32 32 H 1.09002 * 109.46769 * 60.00058 * 16 15 14 33 33 H 1.00898 * 111.00476 * 179.97438 * 17 16 15 34 34 H 1.00898 * 111.00549 * 303.96248 * 17 16 15 35 35 H 1.08996 * 117.50056 * 359.97438 * 18 9 7 36 36 H 1.09001 * 117.49737 * 145.02789 * 18 9 7 37 37 H 1.09005 * 117.49767 * 214.97815 * 19 9 7 38 38 H 1.09001 * 117.49973 * 359.97017 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1958 -0.0811 9 6 1.2547 -2.4970 0.1052 10 6 0.8316 -2.9022 1.5186 11 8 1.9945 -3.1533 2.3103 12 6 1.7088 -3.5405 3.6560 13 6 3.0201 -3.7828 4.4061 14 6 2.7144 -4.1967 5.8470 15 6 4.0256 -4.4384 6.5973 16 6 3.7199 -4.8529 8.0381 17 7 4.9789 -5.0855 8.7583 18 6 1.6416 -3.6154 -0.8647 19 6 0.3185 -2.8687 -1.0464 20 1 -0.4850 0.8401 0.0004 21 1 0.2522 -2.0964 1.9694 22 1 0.2226 -3.8049 1.4708 23 1 1.1479 -2.7477 4.1509 24 1 1.1179 -4.4563 3.6529 25 1 3.5808 -4.5757 3.9111 26 1 3.6115 -2.8671 4.4092 27 1 2.1540 -3.4034 6.3418 28 1 2.1228 -5.1122 5.8443 29 1 4.5864 -5.2314 6.1027 30 1 4.6168 -3.5226 6.6001 31 1 3.1589 -4.0601 8.5330 32 1 3.1289 -5.7688 8.0349 33 1 4.8038 -5.3603 9.7132 34 1 5.5463 -5.7710 8.2827 35 1 2.4380 -3.4085 -1.5795 36 1 1.5946 -4.6400 -0.4959 37 1 -0.5988 -3.4022 -0.7971 38 1 0.2445 -2.1706 -1.8803 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395000461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:29 Heat of formation + Delta-G solvation = -48.310874 kcal Electronic energy + Delta-G solvation = -15521.473289 eV Core-core repulsion = 12977.809166 eV Total energy + Delta-G solvation = -2543.664123 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.66390 -36.59944 -35.53060 -33.35209 -31.85663 -29.26472 -26.20867 -25.04851 -23.98054 -21.44833 -21.03159 -20.94082 -19.04564 -16.33416 -16.20225 -15.76920 -15.43186 -14.96852 -14.60136 -14.34538 -14.06822 -13.64150 -12.97950 -12.73322 -12.28018 -11.82440 -11.74599 -11.30641 -11.08636 -10.97149 -10.84724 -10.75877 -10.47672 -10.42672 -10.39542 -10.10843 -9.34835 -9.01989 -8.99026 -8.57115 -8.33524 -8.02959 -5.96716 -4.00113 3.36707 3.40200 3.44640 4.15237 4.46221 4.51425 4.83032 4.96219 5.17262 5.22212 5.33118 5.44288 5.51434 5.62333 5.64136 5.80914 5.88313 5.98358 6.04874 6.14357 6.22270 6.36890 6.44235 6.47064 6.51333 6.76771 6.79207 6.83182 6.87563 7.12356 7.14461 7.50277 7.57757 7.96119 8.23826 8.54535 8.99878 9.63975 11.12694 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.004913 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.013119 B = 5697.315823 C = 6323.398218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.481 4.481 8 H 0.060 0.940 9 C 0.044 3.956 10 C 0.110 3.890 11 O -0.374 6.374 12 C 0.061 3.939 13 C -0.116 4.116 14 C -0.115 4.115 15 C -0.118 4.118 16 C 0.059 3.941 17 N -0.854 5.854 18 C -0.206 4.206 19 C -0.151 4.151 20 H 0.259 0.741 21 H 0.051 0.949 22 H 0.013 0.987 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.339 0.661 34 H 0.340 0.660 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 -9.363 12.262 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.519 4.519 8 H 0.078 0.922 9 C 0.043 3.957 10 C 0.034 3.966 11 O -0.293 6.293 12 C -0.017 4.017 13 C -0.153 4.153 14 C -0.153 4.153 15 C -0.156 4.156 16 C -0.071 4.071 17 N -0.384 5.384 18 C -0.243 4.243 19 C -0.189 4.189 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.812 -8.435 12.039 15.186 hybrid contribution -0.351 -0.113 0.235 0.437 sum 3.461 -8.548 12.273 15.352 Atomic orbital electron populations 1.70002 1.05830 1.26431 1.50119 1.24978 0.94843 0.98892 0.94792 0.86676 0.79647 0.83056 0.78741 1.20262 1.21378 1.20131 1.20366 0.92744 0.88585 1.50174 0.92223 1.18729 0.98437 0.93104 0.85401 1.22129 0.85877 0.95972 0.92663 1.87949 1.32402 1.88665 1.20271 1.22334 0.96454 0.97663 0.85225 1.21469 0.97652 1.02478 0.93743 1.21462 0.97159 1.01405 0.95298 1.21571 0.97893 1.02336 0.93767 1.21844 0.90774 0.99541 0.94960 1.58702 1.18991 1.54327 1.06334 1.22923 0.99305 0.95926 1.06192 1.22530 0.91291 1.01965 1.03113 0.93125 0.93114 0.96838 0.94231 0.94826 0.91487 0.91026 0.91767 0.92163 0.92125 0.90931 0.91033 0.95693 0.84856 0.84791 0.90466 0.91730 0.92052 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 12.86 55.43 0.71 -24.85 16 2 C 0.07 1.89 5.44 -17.82 -0.10 1.79 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.48 -13.73 8.75 -34.44 -0.30 -14.03 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.04 1.14 1.61 -155.66 -0.25 0.89 16 10 C 0.11 2.64 5.76 37.16 0.21 2.85 16 11 O -0.37 -8.53 10.27 -35.23 -0.36 -8.89 16 12 C 0.06 1.06 5.94 37.16 0.22 1.28 16 13 C -0.12 -1.68 5.58 -26.73 -0.15 -1.83 16 14 C -0.12 -1.29 5.21 -26.73 -0.14 -1.43 16 15 C -0.12 -1.20 5.47 -26.73 -0.15 -1.35 16 16 C 0.06 0.53 6.79 -3.82 -0.03 0.50 16 17 N -0.85 -7.08 9.62 -10.37 -0.10 -7.18 16 18 C -0.21 -4.77 9.96 -26.73 -0.27 -5.03 16 19 C -0.15 -3.67 9.39 -26.73 -0.25 -3.92 16 20 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 21 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 22 H 0.01 0.30 8.09 -51.93 -0.42 -0.12 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.34 2.19 9.08 -39.29 -0.36 1.83 16 34 H 0.34 2.43 8.99 -39.29 -0.35 2.07 16 35 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.08 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -30.15 317.94 -8.19 -38.34 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.02 Total: 1.35 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.19 Total: -20.28 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.61 Total: -32.03 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.36 Total: -8.89 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.15 -8.19 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395000461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.975 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds