Wall clock time and date at job start Mon Mar 30 2020 03:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48506 * 109.47098 * 269.99467 * 3 2 1 5 5 H 1.48503 * 109.47334 * 29.99451 * 3 2 1 6 6 H 1.48499 * 109.47184 * 149.99828 * 3 2 1 7 7 C 1.37877 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99830 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46964 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47242 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.47277 * 179.97438 * 12 11 10 14 14 C 1.42899 * 113.99647 * 180.02562 * 13 12 11 15 15 H 1.08993 * 110.82239 * 26.65876 * 14 13 12 16 16 C 1.55238 * 110.89703 * 263.21000 * 14 13 12 17 17 C 1.54266 * 104.23333 * 203.79668 * 16 14 13 18 18 C 1.53869 * 106.59800 * 23.61579 * 17 16 14 19 19 H 1.09004 * 110.06815 * 240.69431 * 18 17 16 20 20 N 1.46897 * 110.03641 * 119.28640 * 18 17 16 21 21 C 1.54266 * 106.60031 * 359.97438 * 18 17 16 22 22 H 0.97001 * 119.99794 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47053 * 59.99569 * 9 7 2 24 24 H 1.08996 * 109.47334 * 299.99679 * 9 7 2 25 25 H 1.08998 * 109.47521 * 60.00036 * 10 9 7 26 26 H 1.09005 * 109.46997 * 299.99812 * 10 9 7 27 27 H 1.08998 * 109.47103 * 59.99619 * 11 10 9 28 28 H 1.08996 * 109.47121 * 299.99829 * 11 10 9 29 29 H 1.09006 * 109.47109 * 59.99198 * 12 11 10 30 30 H 1.09005 * 109.46927 * 299.99779 * 12 11 10 31 31 H 1.09005 * 110.46917 * 85.10698 * 16 14 13 32 32 H 1.09006 * 110.46947 * 322.48719 * 16 14 13 33 33 H 1.08999 * 110.03060 * 264.32313 * 17 16 14 34 34 H 1.09003 * 110.02805 * 142.89578 * 17 16 14 35 35 H 1.00897 * 111.00230 * 62.82716 * 20 18 17 36 36 H 1.00898 * 111.00182 * 186.78826 * 20 18 17 37 37 H 1.09002 * 110.48629 * 95.07240 * 21 18 17 38 38 H 1.08998 * 110.48744 * 217.58143 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4744 -6.1500 -0.0008 13 8 1.7600 -7.3876 -0.0008 14 6 2.6000 -8.5436 -0.0008 15 1 3.5643 -8.3218 0.4563 16 6 2.7868 -9.0923 -1.4409 17 6 3.1458 -10.5787 -1.2368 18 6 2.5869 -10.9809 0.1392 19 1 3.3975 -11.3049 0.7920 20 7 1.6024 -12.0604 -0.0134 21 6 1.9083 -9.7248 0.7237 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8905 26 1 2.8719 -3.6043 -0.8895 27 1 0.8539 -5.0445 -0.8903 28 1 0.8533 -5.0451 0.8896 29 1 3.1013 -6.0926 0.8892 30 1 3.1010 -6.0918 -0.8908 31 1 3.5992 -8.5695 -1.9456 32 1 1.8606 -8.9979 -2.0079 33 1 4.2281 -10.7069 -1.2524 34 1 2.6863 -11.1843 -2.0180 35 1 2.0315 -12.8900 -0.3950 36 1 1.1459 -12.2602 0.8639 37 1 0.8402 -9.7322 0.5063 38 1 2.0775 -9.6652 1.7988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395338106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:45 Heat of formation + Delta-G solvation = -103.227139 kcal Electronic energy + Delta-G solvation = -15313.245308 eV Core-core repulsion = 12767.199836 eV Total energy + Delta-G solvation = -2546.045471 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05254 -37.91257 -36.28118 -34.35006 -33.00932 -30.60261 -29.32155 -27.04148 -26.29420 -23.41450 -22.09468 -21.48173 -20.76592 -18.44046 -17.93942 -16.91827 -16.75841 -16.54584 -16.23433 -16.01896 -15.22091 -14.70441 -14.38449 -14.15308 -13.83474 -13.51956 -13.15700 -12.81077 -12.73301 -12.40650 -12.32502 -12.20227 -12.07618 -12.04197 -11.86440 -11.45325 -11.41581 -11.32833 -11.07503 -10.55822 -10.38608 -9.59738 -8.19922 -6.31804 1.40119 1.42138 1.53282 2.40768 2.67335 3.12943 3.56136 3.58380 3.81246 3.99217 4.06774 4.18930 4.31439 4.43494 4.45798 4.52847 4.55792 4.61591 4.70477 4.81883 4.87796 4.95217 5.08279 5.13819 5.16051 5.21887 5.25529 5.27428 5.31602 5.53104 5.75154 5.85682 6.24261 6.30154 6.38300 6.62601 6.85799 7.37674 8.92289 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.085354 B = 0.003387 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.965444 B = 8263.830044 C = 8395.251532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.111 4.111 12 C 0.072 3.928 13 O -0.400 6.400 14 C 0.075 3.925 15 H 0.081 0.919 16 C -0.142 4.142 17 C -0.113 4.113 18 C 0.091 3.909 19 H 0.055 0.945 20 N -0.854 5.854 21 C -0.118 4.118 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.010 1.010 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.351 0.649 36 H 0.348 0.652 37 H 0.067 0.933 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.607 -22.885 0.389 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.148 4.148 12 C -0.004 4.004 13 O -0.320 6.320 14 C 0.017 3.983 15 H 0.099 0.901 16 C -0.180 4.180 17 C -0.151 4.151 18 C -0.020 4.020 19 H 0.072 0.928 20 N -0.386 5.386 21 C -0.156 4.156 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.086 0.914 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.905 -22.308 -0.111 23.667 hybrid contribution 0.632 0.598 0.616 1.066 sum 8.537 -21.709 0.504 23.333 Atomic orbital electron populations 1.70115 1.07952 1.27818 1.51728 1.26056 0.95806 1.03612 0.94706 0.85397 0.78654 0.78141 0.78543 1.19697 1.20747 1.18522 1.21739 0.93676 0.92343 1.50503 0.91883 1.19026 0.94532 0.93290 0.94710 1.21356 0.98017 0.92725 1.01060 1.21469 0.98369 0.93141 1.01845 1.22528 0.94259 0.82866 1.00782 1.87896 1.34947 1.14116 1.95046 1.23318 0.93799 0.85143 0.96079 0.90094 1.22825 1.01669 0.96604 0.96914 1.22122 1.01014 0.94940 0.96988 1.21840 0.92842 0.91168 0.96158 0.92761 1.58802 1.33902 1.11894 1.34012 1.22473 1.00821 0.92780 0.99508 0.92756 0.99258 0.99183 0.92415 0.92492 0.92756 0.92608 0.92259 0.92526 0.90989 0.92328 0.90115 0.90697 0.83533 0.83894 0.91395 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.52 13.29 21.45 0.28 -58.23 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.09 -3.95 5.15 30.60 0.16 -3.80 16 11 C -0.11 -4.05 5.58 30.59 0.17 -3.88 16 12 C 0.07 2.12 5.78 71.98 0.42 2.53 16 13 O -0.40 -12.03 10.14 -148.98 -1.51 -13.54 16 14 C 0.07 1.67 3.41 32.00 0.11 1.78 16 15 H 0.08 1.57 7.83 -2.39 -0.02 1.55 16 16 C -0.14 -2.89 6.57 31.79 0.21 -2.68 16 17 C -0.11 -1.73 6.59 31.32 0.21 -1.53 16 18 C 0.09 1.37 4.03 45.64 0.18 1.55 16 19 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 20 N -0.85 -11.60 9.10 -165.68 -1.51 -13.10 16 21 C -0.12 -2.32 6.19 31.66 0.20 -2.13 16 22 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 29 H 0.06 1.58 8.12 -2.38 -0.02 1.56 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.18 7.92 -2.39 -0.02 1.16 16 35 H 0.35 3.41 9.07 -89.70 -0.81 2.59 16 36 H 0.35 3.95 9.01 -89.70 -0.81 3.14 16 37 H 0.07 1.62 8.05 -2.39 -0.02 1.60 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -67.31 309.99 1.18 -66.13 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -0.60 Total: 10.01 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 2.49 Total: -38.17 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.22 Total: -71.34 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -1.51 Total: -13.54 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.31 1.18 -66.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395338106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.097 kcal (2) G-P(sol) polarization free energy of solvation -67.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds