Wall clock time and date at job start Mon Mar 30 2020 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99938 * 2 1 4 4 H 1.48501 * 109.46926 * 239.99965 * 3 2 1 5 5 H 1.48504 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47259 * 119.99833 * 3 2 1 7 7 C 1.37869 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99802 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.88002 * 303.84584 * 9 7 2 11 11 C 1.55398 * 111.05809 * 67.58770 * 9 7 2 12 12 C 1.54322 * 102.90031 * 153.64741 * 11 9 7 13 13 N 1.47439 * 107.36952 * 337.89642 * 12 11 9 14 14 C 1.46904 * 111.00045 * 236.65966 * 13 12 11 15 15 C 1.53000 * 109.46800 * 290.12836 * 14 13 12 16 16 C 1.53007 * 109.46818 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.46996 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46939 * 180.02562 * 17 16 15 19 19 O 1.42906 * 109.46806 * 180.02562 * 18 17 16 20 20 C 1.47843 * 108.57210 * 358.92676 * 13 12 11 21 21 H 0.97004 * 119.99744 * 0.02562 * 1 2 3 22 22 H 1.09005 * 110.67856 * 35.34619 * 11 9 7 23 23 H 1.08997 * 110.84583 * 272.02943 * 11 9 7 24 24 H 1.09002 * 109.89036 * 218.40745 * 12 11 9 25 25 H 1.09003 * 109.88743 * 97.38054 * 12 11 9 26 26 H 1.09004 * 109.46973 * 50.12514 * 14 13 12 27 27 H 1.08996 * 109.47528 * 170.13051 * 14 13 12 28 28 H 1.08997 * 109.47444 * 299.99462 * 15 14 13 29 29 H 1.08999 * 109.47770 * 60.00095 * 15 14 13 30 30 H 1.08991 * 109.47348 * 300.00171 * 16 15 14 31 31 H 1.09000 * 109.46793 * 60.00461 * 16 15 14 32 32 H 1.08998 * 109.47109 * 300.00547 * 17 16 15 33 33 H 1.09003 * 109.46903 * 59.99974 * 17 16 15 34 34 H 1.09004 * 109.47027 * 299.99990 * 18 17 16 35 35 H 1.08996 * 109.47513 * 60.00550 * 18 17 16 36 36 H 0.96698 * 113.99686 * 179.97438 * 19 18 17 37 37 H 1.08996 * 110.37823 * 142.92442 * 20 13 12 38 38 H 1.09001 * 110.37314 * 265.15716 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5659 -2.5513 0.8478 11 6 0.4925 -2.7071 -1.3385 12 6 0.3900 -4.2434 -1.4415 13 7 1.4553 -4.8133 -0.5965 14 6 2.3288 -5.6998 -1.3770 15 6 1.5614 -6.9683 -1.7548 16 6 2.4711 -7.8913 -2.5682 17 6 1.7039 -9.1603 -2.9456 18 6 2.6137 -10.0835 -3.7584 19 8 1.8970 -11.2684 -4.1113 20 6 2.2262 -3.7028 0.0021 21 1 -0.4850 0.8401 -0.0004 22 1 1.0662 -2.3024 -2.1724 23 1 -0.4991 -2.2566 -1.2969 24 1 0.5304 -4.5559 -2.4763 25 1 -0.5847 -4.5748 -1.0833 26 1 2.6510 -5.1866 -2.2831 27 1 3.2014 -5.9670 -0.7809 28 1 1.2393 -7.4816 -0.8488 29 1 0.6889 -6.7013 -2.3509 30 1 2.7929 -7.3780 -3.4742 31 1 3.3438 -8.1585 -1.9724 32 1 1.3824 -9.6734 -2.0393 33 1 0.8309 -8.8934 -3.5411 34 1 2.9356 -9.5705 -4.6647 35 1 3.4865 -10.3504 -3.1625 36 1 2.4134 -11.9007 -4.6295 37 1 2.5212 -3.9518 1.0215 38 1 3.1052 -3.4815 -0.6032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397729410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:50 Heat of formation + Delta-G solvation = -75.083605 kcal Electronic energy + Delta-G solvation = -15622.158501 eV Core-core repulsion = 13077.333425 eV Total energy + Delta-G solvation = -2544.825076 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.26373 -37.39950 -35.12297 -33.01558 -31.14643 -28.63387 -28.19466 -25.20698 -23.80452 -21.78779 -21.12924 -19.66572 -19.34541 -17.53139 -16.41642 -16.15725 -15.22732 -14.77503 -14.49388 -14.17796 -14.12827 -13.18092 -12.76188 -12.44082 -12.36577 -11.98509 -11.68581 -11.54714 -11.10855 -11.01471 -10.94607 -10.84269 -10.70727 -10.48295 -10.30253 -10.21506 -10.07418 -9.60549 -9.19735 -8.85480 -8.38046 -7.57245 -6.01845 -4.05134 3.31512 3.36305 3.38585 3.92474 4.42047 4.69475 4.76114 4.95573 5.08072 5.15552 5.27491 5.32474 5.51897 5.57603 5.72777 5.80966 5.88322 5.93154 6.00159 6.11316 6.16324 6.27316 6.39772 6.47859 6.54979 6.57069 6.86017 7.15599 7.18693 7.34370 7.62118 7.72977 7.79176 7.91627 8.03145 8.43664 8.97343 9.58943 11.08181 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.073713 B = 0.003963 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.760584 B = 7064.113023 C = 7180.173629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.049 3.951 10 H 0.040 0.960 11 C -0.121 4.121 12 C 0.039 3.961 13 N -0.536 5.536 14 C 0.053 3.947 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.120 4.120 18 C 0.074 3.926 19 O -0.577 6.577 20 C 0.046 3.954 21 H 0.261 0.739 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.377 0.623 37 H 0.060 0.940 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 -15.788 -6.668 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.030 3.970 10 H 0.058 0.942 11 C -0.160 4.160 12 C -0.088 4.088 13 N -0.260 5.260 14 C -0.076 4.076 15 C -0.150 4.150 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.004 4.004 19 O -0.383 6.383 20 C -0.081 4.081 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.088 0.912 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.224 0.776 37 H 0.079 0.921 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.813 -15.658 -5.937 17.174 hybrid contribution 1.323 1.166 -1.056 2.056 sum 5.136 -14.492 -6.993 16.890 Atomic orbital electron populations 1.69959 1.05902 1.26630 1.50141 1.24976 0.94845 0.99037 0.94971 0.86677 0.79613 0.83209 0.78594 1.20352 1.21290 1.20222 1.21011 0.92714 0.90388 1.51275 0.92708 1.19774 0.92659 0.90977 0.93603 0.94162 1.22771 1.01852 0.91071 1.00289 1.22892 0.95017 0.96853 0.94057 1.63587 1.12068 1.19014 1.31338 1.22198 0.95641 0.93696 0.96049 1.21556 0.98293 0.95307 0.99889 1.21481 0.98729 0.94956 1.00202 1.21532 0.98891 0.95058 1.00252 1.22259 0.94396 0.85792 0.97906 1.86492 1.43740 1.31659 1.76359 1.23162 0.96419 0.90936 0.97580 0.92961 0.93495 0.91237 0.94599 0.92044 0.95376 0.91710 0.91279 0.92000 0.92034 0.91882 0.91197 0.91271 0.93745 0.93714 0.77630 0.92110 0.94788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 12.61 55.43 0.70 -25.04 16 2 C 0.06 1.78 5.37 -17.82 -0.10 1.69 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.28 8.50 -34.44 -0.29 -14.57 16 8 H 0.05 1.49 7.77 -52.48 -0.41 1.08 16 9 C 0.05 1.25 2.84 -89.49 -0.25 0.99 16 10 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 11 C -0.12 -2.86 5.91 -24.77 -0.15 -3.01 16 12 C 0.04 0.78 6.20 -2.84 -0.02 0.77 16 13 N -0.54 -10.42 5.16 -231.24 -1.19 -11.61 16 14 C 0.05 0.84 4.54 -3.82 -0.02 0.82 16 15 C -0.11 -1.48 5.24 -26.73 -0.14 -1.62 16 16 C -0.12 -1.22 5.22 -26.73 -0.14 -1.36 16 17 C -0.12 -1.22 5.58 -26.73 -0.15 -1.37 16 18 C 0.07 0.65 7.05 37.16 0.26 0.91 16 19 O -0.58 -5.49 13.66 -35.23 -0.48 -5.97 16 20 C 0.05 1.00 6.13 -2.29 -0.01 0.99 16 21 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 22 H 0.05 1.14 8.04 -51.93 -0.42 0.72 16 23 H 0.07 1.76 7.84 -51.93 -0.41 1.35 16 24 H 0.04 0.65 6.91 -51.93 -0.36 0.29 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.03 0.46 7.96 -51.93 -0.41 0.04 16 27 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.85 7.14 -51.93 -0.37 0.48 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 1.75 9.12 45.56 0.42 2.16 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.03 0.74 7.69 -51.93 -0.40 0.34 16 LS Contribution 305.14 15.07 4.60 4.60 Total: -1.00 -30.02 305.14 -8.54 -38.57 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.14 Total: -1.10 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -1.01 Total: -15.77 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.49 Total: -36.65 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.48 Total: -5.97 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.02 -8.54 -38.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397729410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.518 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds