Wall clock time and date at job start Mon Mar 30 2020 03:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99938 * 2 1 4 4 H 1.48501 * 109.46926 * 239.99965 * 3 2 1 5 5 H 1.48504 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47259 * 119.99833 * 3 2 1 7 7 C 1.37869 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99802 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.88002 * 303.84584 * 9 7 2 11 11 C 1.55398 * 111.05809 * 67.58770 * 9 7 2 12 12 C 1.54322 * 102.90031 * 153.64741 * 11 9 7 13 13 N 1.47439 * 107.36952 * 337.89642 * 12 11 9 14 14 C 1.46904 * 111.00045 * 236.65966 * 13 12 11 15 15 C 1.53000 * 109.46800 * 290.12836 * 14 13 12 16 16 C 1.53007 * 109.46818 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.46996 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46939 * 180.02562 * 17 16 15 19 19 O 1.42906 * 109.46806 * 180.02562 * 18 17 16 20 20 C 1.47843 * 108.57210 * 358.92676 * 13 12 11 21 21 H 0.97004 * 119.99744 * 0.02562 * 1 2 3 22 22 H 1.09005 * 110.67856 * 35.34619 * 11 9 7 23 23 H 1.08997 * 110.84583 * 272.02943 * 11 9 7 24 24 H 1.09002 * 109.89036 * 218.40745 * 12 11 9 25 25 H 1.09003 * 109.88743 * 97.38054 * 12 11 9 26 26 H 1.09004 * 109.46973 * 50.12514 * 14 13 12 27 27 H 1.08996 * 109.47528 * 170.13051 * 14 13 12 28 28 H 1.08997 * 109.47444 * 299.99462 * 15 14 13 29 29 H 1.08999 * 109.47770 * 60.00095 * 15 14 13 30 30 H 1.08991 * 109.47348 * 300.00171 * 16 15 14 31 31 H 1.09000 * 109.46793 * 60.00461 * 16 15 14 32 32 H 1.08998 * 109.47109 * 300.00547 * 17 16 15 33 33 H 1.09003 * 109.46903 * 59.99974 * 17 16 15 34 34 H 1.09004 * 109.47027 * 299.99990 * 18 17 16 35 35 H 1.08996 * 109.47513 * 60.00550 * 18 17 16 36 36 H 0.96698 * 113.99686 * 179.97438 * 19 18 17 37 37 H 1.08996 * 110.37823 * 142.92442 * 20 13 12 38 38 H 1.09001 * 110.37314 * 265.15716 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5659 -2.5513 0.8478 11 6 0.4925 -2.7071 -1.3385 12 6 0.3900 -4.2434 -1.4415 13 7 1.4553 -4.8133 -0.5965 14 6 2.3288 -5.6998 -1.3770 15 6 1.5614 -6.9683 -1.7548 16 6 2.4711 -7.8913 -2.5682 17 6 1.7039 -9.1603 -2.9456 18 6 2.6137 -10.0835 -3.7584 19 8 1.8970 -11.2684 -4.1113 20 6 2.2262 -3.7028 0.0021 21 1 -0.4850 0.8401 -0.0004 22 1 1.0662 -2.3024 -2.1724 23 1 -0.4991 -2.2566 -1.2969 24 1 0.5304 -4.5559 -2.4763 25 1 -0.5847 -4.5748 -1.0833 26 1 2.6510 -5.1866 -2.2831 27 1 3.2014 -5.9670 -0.7809 28 1 1.2393 -7.4816 -0.8488 29 1 0.6889 -6.7013 -2.3509 30 1 2.7929 -7.3780 -3.4742 31 1 3.3438 -8.1585 -1.9724 32 1 1.3824 -9.6734 -2.0393 33 1 0.8309 -8.8934 -3.5411 34 1 2.9356 -9.5705 -4.6647 35 1 3.4865 -10.3504 -3.1625 36 1 2.4134 -11.9007 -4.6295 37 1 2.5212 -3.9518 1.0215 38 1 3.1052 -3.4815 -0.6032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397729410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:49 Heat of formation + Delta-G solvation = -96.207484 kcal Electronic energy + Delta-G solvation = -15623.074501 eV Core-core repulsion = 13077.333425 eV Total energy + Delta-G solvation = -2545.741076 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85080 -38.15680 -36.24985 -34.82329 -32.65031 -30.03204 -29.94937 -26.75359 -25.34496 -22.96983 -22.05746 -21.43056 -21.00482 -18.48400 -18.18365 -17.13251 -16.73165 -16.46609 -16.04272 -15.32547 -15.16851 -14.47887 -14.26171 -14.07400 -13.91569 -13.19817 -13.02642 -12.97010 -12.85908 -12.64636 -12.44656 -12.24191 -11.94474 -11.82689 -11.63343 -11.52128 -11.40830 -11.08195 -10.92605 -10.85309 -10.50154 -9.15137 -8.15245 -6.26066 1.41011 1.42606 1.50380 2.41461 3.09777 3.16182 3.44598 3.96970 4.07660 4.11571 4.17996 4.25499 4.38651 4.45622 4.55182 4.62662 4.64901 4.70142 4.78615 4.83541 4.92752 4.98781 5.02506 5.07718 5.21441 5.25035 5.31276 5.42410 5.48718 5.56398 5.77006 5.89415 6.06683 6.35907 6.36914 6.83777 6.91865 7.41872 8.94359 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.073713 B = 0.003963 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.760584 B = 7064.113023 C = 7180.173629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.056 0.944 9 C 0.038 3.962 10 H 0.005 0.995 11 C -0.113 4.113 12 C 0.051 3.949 13 N -0.540 5.540 14 C 0.051 3.949 15 C -0.105 4.105 16 C -0.106 4.106 17 C -0.119 4.119 18 C 0.074 3.926 19 O -0.600 6.600 20 C 0.058 3.942 21 H 0.261 0.739 22 H 0.035 0.965 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.028 0.972 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -16.721 -7.468 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.019 3.981 10 H 0.023 0.977 11 C -0.153 4.153 12 C -0.077 4.077 13 N -0.264 5.264 14 C -0.077 4.077 15 C -0.143 4.143 16 C -0.144 4.144 17 C -0.157 4.157 18 C -0.004 4.004 19 O -0.409 6.409 20 C -0.069 4.069 21 H 0.070 0.930 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.247 0.753 37 H 0.083 0.917 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.270 -16.621 -6.749 18.697 hybrid contribution 0.861 1.413 -0.797 1.837 sum 6.130 -15.208 -7.546 18.050 Atomic orbital electron populations 1.70092 1.07381 1.27452 1.50927 1.25803 0.95689 1.02618 0.94568 0.85619 0.78366 0.78770 0.78956 1.19526 1.20972 1.19429 1.21373 0.92987 0.91688 1.51245 0.92615 1.19734 0.93105 0.92194 0.93092 0.97708 1.22576 0.99854 0.93956 0.98869 1.22769 0.95628 0.93752 0.95534 1.63592 1.12414 1.18191 1.32225 1.22334 0.95797 0.93840 0.95713 1.21484 0.98305 0.94474 1.00074 1.21381 0.98420 0.94455 1.00156 1.21492 0.98900 0.95249 1.00073 1.22254 0.94165 0.85553 0.98380 1.86433 1.45043 1.32391 1.76988 1.22933 0.95557 0.90160 0.98240 0.92968 0.94620 0.93735 0.92363 0.91616 0.95353 0.90541 0.91640 0.92603 0.91367 0.90709 0.91943 0.92294 0.92674 0.92382 0.75330 0.91704 0.94642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.40 12.61 21.45 0.27 -54.13 16 2 C 0.01 0.69 5.37 84.65 0.45 1.15 16 3 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.53 -29.96 8.50 25.60 0.22 -29.74 16 8 H 0.06 3.03 7.77 -2.91 -0.02 3.01 16 9 C 0.04 1.97 2.84 -10.06 -0.03 1.94 16 10 H 0.00 0.27 8.14 -2.39 -0.02 0.26 16 11 C -0.11 -5.47 5.91 31.87 0.19 -5.28 16 12 C 0.05 1.98 6.20 86.65 0.54 2.51 16 13 N -0.54 -20.32 5.16 -885.52 -4.57 -24.89 16 14 C 0.05 1.50 4.54 86.30 0.39 1.90 16 15 C -0.11 -2.55 5.24 30.60 0.16 -2.39 16 16 C -0.11 -1.95 5.22 30.60 0.16 -1.79 16 17 C -0.12 -2.21 5.58 30.60 0.17 -2.03 16 18 C 0.07 1.12 7.05 71.98 0.51 1.63 16 19 O -0.60 -10.22 13.66 -148.98 -2.04 -12.26 16 20 C 0.06 2.52 6.13 86.78 0.53 3.05 16 21 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 22 H 0.03 1.75 8.04 -2.38 -0.02 1.73 16 23 H 0.04 2.32 7.84 -2.39 -0.02 2.30 16 24 H 0.06 2.00 6.91 -2.39 -0.02 1.99 16 25 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.03 0.85 7.96 -2.39 -0.02 0.83 16 27 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.42 7.14 -2.39 -0.02 1.40 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.40 2.84 9.12 -74.06 -0.68 2.16 16 37 H 0.06 2.70 8.14 -2.39 -0.02 2.69 16 38 H 0.04 1.50 7.69 -2.39 -0.02 1.48 16 Total: -1.00 -64.21 305.14 -0.69 -64.89 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.33 Total: 9.56 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 3.29 Total: -29.06 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -4.30 Total: -79.02 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -2.04 Total: -12.26 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.21 -0.69 -64.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397729410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.313 kcal (2) G-P(sol) polarization free energy of solvation -64.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds