Wall clock time and date at job start Mon Mar 30 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00313 * 2 1 4 4 C 1.53002 * 109.47543 * 179.97438 * 3 2 1 5 5 H 1.08990 * 112.78116 * 195.78688 * 4 3 2 6 6 C 1.53760 * 113.55083 * 326.64742 * 4 3 2 7 7 C 1.53497 * 83.25829 * 140.97904 * 6 4 3 8 8 N 1.47067 * 113.46104 * 65.00392 * 4 3 2 9 9 C 1.34777 * 136.06127 * 38.13473 * 8 4 3 10 10 O 1.21278 * 119.99854 * 359.63472 * 9 8 4 11 11 C 1.50703 * 120.00161 * 179.62779 * 9 8 4 12 12 C 1.53000 * 109.46912 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 9 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00241 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99936 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00183 * 17 15 13 21 21 H 1.08996 * 109.47152 * 59.99194 * 1 2 3 22 22 H 1.08999 * 109.47219 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47097 * 299.99974 * 1 2 3 24 24 H 1.09007 * 109.46718 * 60.00219 * 3 2 1 25 25 H 1.08994 * 109.47430 * 300.00452 * 3 2 1 26 26 H 1.09001 * 114.39415 * 27.41908 * 6 4 3 27 27 H 1.09002 * 114.26548 * 254.53579 * 6 4 3 28 28 H 1.08991 * 113.46830 * 218.97860 * 7 6 4 29 29 H 1.09000 * 113.46188 * 88.53911 * 7 6 4 30 30 H 1.09002 * 109.47152 * 60.00245 * 11 9 8 31 31 H 1.09001 * 109.46980 * 300.00345 * 11 9 8 32 32 H 1.09001 * 109.47194 * 299.99742 * 12 11 9 33 33 H 1.08992 * 109.47399 * 59.99914 * 12 11 9 34 34 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 4.0324 2.1153 0.2741 6 6 4.0547 -0.0375 0.7760 7 6 5.0661 -0.1121 -0.3762 8 7 4.0747 0.5699 -1.2218 9 6 3.7896 0.6158 -2.5382 10 8 2.8716 1.3011 -2.9363 11 6 4.6116 -0.1843 -3.5156 12 6 4.0835 0.0444 -4.9333 13 6 4.9051 -0.7562 -5.9106 14 1 5.7224 -1.3667 -5.5560 15 6 4.6133 -0.7093 -7.2573 16 7 3.6177 0.0337 -7.6890 17 14 5.6321 -1.7011 -8.4688 18 1 5.0279 -3.0471 -8.6382 19 1 5.6611 -1.0031 -9.7792 20 1 7.0172 -1.8417 -7.9521 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6886 1.8463 0.8901 25 1 1.6887 1.8464 -0.8899 26 1 3.3585 -0.8752 0.8145 27 1 4.4963 0.2005 1.7437 28 1 5.2836 -1.1306 -0.6976 29 1 5.9666 0.4769 -0.2021 30 1 4.5414 -1.2435 -3.2678 31 1 5.6527 0.1335 -3.4604 32 1 3.0422 -0.2732 -4.9888 33 1 4.1539 1.1035 -5.1808 34 1 3.4122 0.0664 -8.6364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590496784.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:59 Heat of formation + Delta-G solvation = -52.239509 kcal Electronic energy + Delta-G solvation = -15884.322138 eV Core-core repulsion = 13204.654562 eV Total energy + Delta-G solvation = -2679.667576 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.24617 -37.72187 -36.93263 -33.39890 -31.16322 -29.67226 -28.86940 -26.19669 -25.47035 -23.09252 -22.34423 -20.47387 -18.40919 -16.95484 -16.33065 -16.01375 -15.91953 -15.55619 -14.77085 -14.46413 -14.34047 -13.67536 -13.03186 -12.67551 -12.34784 -12.17744 -12.06542 -11.87156 -11.53730 -11.32850 -11.07902 -10.89721 -10.56446 -10.34673 -9.89956 -9.69882 -9.56968 -9.09020 -8.84598 -8.36930 -8.26903 -5.92623 -3.96783 3.15776 3.35174 3.35964 3.41572 3.44640 3.77800 4.41383 4.50095 4.93454 5.00151 5.14870 5.26836 5.28616 5.38890 5.42196 5.45524 5.50322 5.58797 5.70127 5.77392 5.83684 6.19889 6.28423 6.34131 6.43662 6.97324 7.19703 7.78432 7.91345 8.10807 8.18164 8.43128 8.85737 9.11818 9.66401 11.18464 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.039162 B = 0.005716 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.810076 B = 4897.636635 C = 5270.784915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.054 3.946 4 C 0.126 3.874 5 H 0.099 0.901 6 C -0.144 4.144 7 C 0.100 3.900 8 N -0.647 5.647 9 C 0.543 3.457 10 O -0.535 6.535 11 C -0.121 4.121 12 C 0.037 3.963 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.891 5.891 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.042 0.958 22 H 0.083 0.917 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 0.352 19.241 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C -0.024 4.024 4 C 0.023 3.977 5 H 0.116 0.884 6 C -0.182 4.182 7 C -0.024 4.024 8 N -0.386 5.386 9 C 0.335 3.665 10 O -0.410 6.410 11 C -0.161 4.161 12 C 0.000 4.000 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.061 0.939 22 H 0.102 0.898 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.677 0.624 18.573 18.596 hybrid contribution 0.361 -0.196 -0.726 0.834 sum -0.316 0.428 17.848 17.855 Atomic orbital electron populations 1.22691 0.81287 1.02527 0.99766 1.87848 1.19377 1.27399 1.95371 1.22601 0.93387 0.85370 1.01012 1.22735 0.92985 0.97634 0.84384 0.88357 1.23447 0.98741 0.99153 0.96819 1.22845 0.92868 0.98449 0.88213 1.49939 1.34887 1.49170 1.04592 1.21176 0.84424 0.81411 0.79497 1.90636 1.31307 1.42210 1.76894 1.21805 0.98754 0.98744 0.96806 1.18907 0.96732 0.97745 0.86629 1.21226 1.15643 1.27646 0.91856 0.92624 1.25025 0.95299 0.95584 0.98485 1.70001 1.28814 1.39412 1.14718 0.86584 0.80574 0.80122 0.80627 1.20666 1.21232 1.19885 0.93916 0.89822 0.94536 0.92917 0.91309 0.87645 0.90055 0.90318 0.90271 0.90422 0.90529 0.95825 0.95897 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.59 9.17 -35.23 -0.32 -5.91 16 3 C 0.05 0.73 5.94 37.16 0.22 0.95 16 4 C 0.13 1.60 4.59 -72.25 -0.33 1.27 16 5 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 6 C -0.14 -1.44 7.85 -26.08 -0.20 -1.65 16 7 C 0.10 1.14 8.41 -8.50 -0.07 1.07 16 8 N -0.65 -10.50 3.56 -177.27 -0.63 -11.13 16 9 C 0.54 11.57 7.98 -10.98 -0.09 11.48 16 10 O -0.54 -13.46 15.43 5.56 0.09 -13.37 16 11 C -0.12 -2.68 5.47 -27.88 -0.15 -2.83 16 12 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 13 C -0.53 -15.37 9.11 -34.44 -0.31 -15.69 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -28.04 13.29 55.43 0.74 -27.31 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.14 7.04 -51.93 -0.37 0.78 16 26 H 0.11 1.20 6.95 -51.93 -0.36 0.84 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 31 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 290.03 15.07 4.37 4.37 Total: -1.00 -35.53 290.03 -6.16 -41.70 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -5.34 Total: -4.05 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.04 Total: -1.34 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.10 Total: -38.44 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.24 Total: -19.29 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.53 -6.16 -41.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590496784.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.544 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds