Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00591 * 2 1 4 4 O 1.20825 * 119.99685 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00184 * 180.27402 * 3 2 1 6 6 C 1.52991 * 109.47020 * 174.25873 * 5 3 2 7 7 N 1.46899 * 115.55280 * 297.90323 * 6 5 3 8 8 C 1.46899 * 110.99940 * 294.55714 * 7 6 5 9 9 C 1.53002 * 109.46988 * 176.33428 * 8 7 6 10 10 C 1.50694 * 109.47008 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00112 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99952 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00249 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99897 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47006 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46736 * 120.00271 * 14 12 10 17 17 H 1.48496 * 109.47224 * 240.00025 * 14 12 10 18 18 C 1.53008 * 117.49857 * 152.23211 * 6 5 3 19 19 C 1.53004 * 117.49914 * 83.57678 * 6 5 3 20 20 H 1.09002 * 109.47203 * 300.00540 * 1 2 3 21 21 H 1.09008 * 109.46978 * 60.00024 * 1 2 3 22 22 H 1.08999 * 109.47597 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46890 * 294.26372 * 5 3 2 24 24 H 1.09005 * 109.46996 * 54.25829 * 5 3 2 25 25 H 1.00902 * 110.99884 * 170.60343 * 7 6 5 26 26 H 1.08996 * 109.47247 * 296.33838 * 8 7 6 27 27 H 1.09003 * 109.46764 * 56.33845 * 8 7 6 28 28 H 1.08996 * 109.47461 * 300.00279 * 9 8 7 29 29 H 1.09000 * 109.47435 * 60.00283 * 9 8 7 30 30 H 0.96996 * 120.00162 * 179.97438 * 13 12 10 31 31 H 1.08996 * 117.49657 * 0.02562 * 18 6 5 32 32 H 1.08996 * 117.50038 * 145.01827 * 18 6 5 33 33 H 1.09002 * 117.49906 * 214.98091 * 19 6 5 34 34 H 1.09000 * 117.49579 * 359.97212 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0062 6 6 4.0000 2.7349 -0.1492 7 7 3.5860 3.4001 -1.3918 8 6 4.2395 2.7910 -2.5579 9 6 3.7157 3.4476 -3.8368 10 6 4.3857 2.8223 -5.0331 11 1 5.1120 2.0350 -4.8952 12 6 4.0713 3.2553 -6.3039 13 7 3.1873 4.2144 -6.4719 14 14 4.9023 2.4807 -7.7868 15 1 5.8501 1.4322 -7.3315 16 1 3.8742 1.8696 -8.6671 17 1 5.6425 3.5242 -8.5407 18 6 5.3513 3.1323 0.4484 19 6 4.0533 3.5838 1.1226 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 3.9552 0.8699 0.9281 24 1 3.9570 0.6960 -0.8433 25 1 3.7709 4.3911 -1.3503 26 1 5.3172 2.9385 -2.4888 27 1 4.0196 1.7236 -2.5813 28 1 2.6380 3.3000 -3.9060 29 1 3.9355 4.5150 -3.8136 30 1 2.9664 4.5192 -7.3659 31 1 5.9314 2.3534 0.9431 32 1 5.9329 3.8875 -0.0802 33 1 3.7814 4.6359 1.0372 34 1 3.7790 3.1020 2.0611 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593057882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = -67.758937 kcal Electronic energy + Delta-G solvation = -15812.627940 eV Core-core repulsion = 13132.287391 eV Total energy + Delta-G solvation = -2680.340549 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.24798 -38.29800 -35.99662 -34.07038 -32.15699 -30.18019 -28.47054 -27.12844 -24.10680 -22.41327 -21.48960 -20.47081 -19.07934 -17.29348 -16.62606 -16.29761 -16.07716 -15.32848 -15.11326 -14.41320 -13.53077 -13.41628 -13.26215 -12.98148 -12.53350 -12.07110 -11.99642 -11.77066 -11.46583 -11.23175 -10.96502 -10.77836 -10.57675 -10.52488 -10.15045 -10.10829 -9.72091 -9.31760 -9.09791 -8.33816 -7.68737 -5.98061 -4.00855 2.56446 2.86705 3.31936 3.39150 3.43035 3.95271 4.41894 4.57475 4.70896 4.83997 4.96481 5.19719 5.22845 5.30647 5.37777 5.45582 5.61870 5.69965 5.74246 5.87309 5.99338 6.18747 6.30535 6.43166 6.63199 6.98751 7.50759 7.74143 7.83500 7.96094 8.09292 8.11558 8.44764 9.06854 9.62835 11.13414 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.006445 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.878450 B = 4343.210846 C = 4951.682854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.370 6.370 3 C 0.460 3.540 4 O -0.475 6.475 5 C -0.066 4.066 6 C 0.071 3.929 7 N -0.644 5.644 8 C 0.066 3.934 9 C 0.026 3.974 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.214 4.214 19 C -0.166 4.166 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.096 0.904 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.342 0.658 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.014 0.986 30 H 0.260 0.740 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 -6.586 15.302 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.288 6.288 3 C 0.301 3.699 4 O -0.358 6.358 5 C -0.104 4.104 6 C -0.023 4.023 7 N -0.273 5.273 8 C -0.061 4.061 9 C -0.012 4.012 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.254 4.254 19 C -0.203 4.203 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.114 0.886 23 H 0.122 0.878 24 H 0.128 0.872 25 H 0.161 0.839 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.883 -6.536 15.064 16.445 hybrid contribution 1.118 0.073 -0.827 1.393 sum 0.235 -6.463 14.237 15.637 Atomic orbital electron populations 1.23173 0.76807 1.03122 1.02506 1.86475 1.23141 1.34220 1.84966 1.23460 0.91795 0.81285 0.73327 1.90692 1.66553 1.35890 1.42710 1.20770 0.88387 0.96153 1.05131 1.21166 0.96804 0.92736 0.91580 1.60296 1.60372 1.06974 0.99682 1.22184 0.94796 0.98778 0.90355 1.19057 0.97239 0.95579 0.89299 1.21205 1.23687 1.19926 0.91123 0.92694 1.25011 0.95213 0.95120 0.99053 1.69988 1.32828 1.28247 1.22127 0.86538 0.79379 0.79210 0.82880 1.19752 1.20991 1.21024 1.23675 0.91770 1.04360 1.05611 1.23092 1.00476 1.00747 0.95997 0.92331 0.91735 0.88589 0.87760 0.87248 0.83933 0.96299 0.92553 0.95709 0.96779 0.93049 0.88852 0.88605 0.88520 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.26 10.56 -39.26 -0.41 -5.67 16 3 C 0.46 7.28 7.87 36.01 0.28 7.57 16 4 O -0.47 -8.95 15.41 -18.75 -0.29 -9.24 16 5 C -0.07 -0.89 5.52 -27.89 -0.15 -1.05 16 6 C 0.07 1.05 1.14 -131.60 -0.15 0.90 16 7 N -0.64 -12.11 6.07 -99.96 -0.61 -12.72 16 8 C 0.07 1.42 5.49 -3.82 -0.02 1.40 16 9 C 0.03 0.69 5.27 -27.88 -0.15 0.54 16 10 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 14 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C -0.21 -2.66 10.12 -26.69 -0.27 -2.93 16 19 C -0.17 -2.11 10.00 -26.69 -0.27 -2.38 16 20 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 21 H 0.06 0.81 8.13 -51.92 -0.42 0.39 16 22 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 24 H 0.11 1.47 6.95 -51.93 -0.36 1.11 16 25 H 0.34 6.26 8.65 -39.29 -0.34 5.92 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 1.19 6.77 -51.93 -0.35 0.84 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 294.66 15.07 4.44 4.44 Total: -1.00 -32.99 294.66 -6.47 -39.45 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.24 Total: 1.69 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.07 Total: -8.15 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.13 Total: -39.36 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.70 Total: -14.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.99 -6.47 -39.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593057882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.304 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds