Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00591 * 2 1 4 4 O 1.20825 * 119.99685 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00184 * 180.27402 * 3 2 1 6 6 C 1.52991 * 109.47020 * 174.25873 * 5 3 2 7 7 N 1.46899 * 115.55280 * 297.90323 * 6 5 3 8 8 C 1.46899 * 110.99940 * 294.55714 * 7 6 5 9 9 C 1.53002 * 109.46988 * 176.33428 * 8 7 6 10 10 C 1.50694 * 109.47008 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00112 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99952 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00249 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99897 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47006 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46736 * 120.00271 * 14 12 10 17 17 H 1.48496 * 109.47224 * 240.00025 * 14 12 10 18 18 C 1.53008 * 117.49857 * 152.23211 * 6 5 3 19 19 C 1.53004 * 117.49914 * 83.57678 * 6 5 3 20 20 H 1.09002 * 109.47203 * 300.00540 * 1 2 3 21 21 H 1.09008 * 109.46978 * 60.00024 * 1 2 3 22 22 H 1.08999 * 109.47597 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46890 * 294.26372 * 5 3 2 24 24 H 1.09005 * 109.46996 * 54.25829 * 5 3 2 25 25 H 1.00902 * 110.99884 * 170.60343 * 7 6 5 26 26 H 1.08996 * 109.47247 * 296.33838 * 8 7 6 27 27 H 1.09003 * 109.46764 * 56.33845 * 8 7 6 28 28 H 1.08996 * 109.47461 * 300.00279 * 9 8 7 29 29 H 1.09000 * 109.47435 * 60.00283 * 9 8 7 30 30 H 0.96996 * 120.00162 * 179.97438 * 13 12 10 31 31 H 1.08996 * 117.49657 * 0.02562 * 18 6 5 32 32 H 1.08996 * 117.50038 * 145.01827 * 18 6 5 33 33 H 1.09002 * 117.49906 * 214.98091 * 19 6 5 34 34 H 1.09000 * 117.49579 * 359.97212 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0062 6 6 4.0000 2.7349 -0.1492 7 7 3.5860 3.4001 -1.3918 8 6 4.2395 2.7910 -2.5579 9 6 3.7157 3.4476 -3.8368 10 6 4.3857 2.8223 -5.0331 11 1 5.1120 2.0350 -4.8952 12 6 4.0713 3.2553 -6.3039 13 7 3.1873 4.2144 -6.4719 14 14 4.9023 2.4807 -7.7868 15 1 5.8501 1.4322 -7.3315 16 1 3.8742 1.8696 -8.6671 17 1 5.6425 3.5242 -8.5407 18 6 5.3513 3.1323 0.4484 19 6 4.0533 3.5838 1.1226 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 3.9552 0.8699 0.9281 24 1 3.9570 0.6960 -0.8433 25 1 3.7709 4.3911 -1.3503 26 1 5.3172 2.9385 -2.4888 27 1 4.0196 1.7236 -2.5813 28 1 2.6380 3.3000 -3.9060 29 1 3.9355 4.5150 -3.8136 30 1 2.9664 4.5192 -7.3659 31 1 5.9314 2.3534 0.9431 32 1 5.9329 3.8875 -0.0802 33 1 3.7814 4.6359 1.0372 34 1 3.7790 3.1020 2.0611 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593057882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = -90.194168 kcal Electronic energy + Delta-G solvation = -15813.600805 eV Core-core repulsion = 13132.287391 eV Total energy + Delta-G solvation = -2681.313414 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.42351 -39.47046 -37.21452 -35.94464 -34.07131 -31.24761 -30.38800 -28.09741 -26.11812 -23.49617 -22.65321 -22.30621 -20.29014 -18.52272 -18.45457 -17.62236 -17.34131 -16.75009 -16.38907 -16.25461 -15.02226 -14.77465 -14.48609 -14.37527 -14.15210 -13.48716 -13.21970 -13.06553 -12.91605 -12.83806 -12.50584 -12.38210 -12.28072 -11.70586 -11.64481 -11.47699 -11.35929 -11.23677 -10.82143 -10.57915 -9.08889 -8.21217 -6.33514 1.37536 1.39784 1.40713 1.54172 1.83119 2.39614 2.88446 3.12208 3.27481 3.64329 3.76324 3.95302 4.20876 4.34174 4.36442 4.43376 4.56236 4.65199 4.66977 4.70781 4.78621 4.83071 5.02064 5.07512 5.23438 5.44103 5.51480 5.63985 5.78341 6.13927 6.30539 6.50435 6.84564 6.92840 7.36255 8.91517 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.006445 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.878450 B = 4343.210846 C = 4951.682854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.457 3.543 4 O -0.515 6.515 5 C -0.065 4.065 6 C 0.039 3.961 7 N -0.661 5.661 8 C 0.089 3.911 9 C 0.032 3.968 10 C -0.541 4.541 11 H 0.064 0.936 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.970 3.030 15 H -0.258 1.258 16 H -0.279 1.279 17 H -0.277 1.277 18 C -0.192 4.192 19 C -0.157 4.157 20 H 0.064 0.936 21 H 0.046 0.954 22 H 0.132 0.868 23 H 0.147 0.853 24 H 0.109 0.891 25 H 0.339 0.661 26 H 0.026 0.974 27 H 0.058 0.942 28 H -0.015 1.015 29 H -0.012 1.012 30 H 0.263 0.737 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -8.332 16.217 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.289 6.289 3 C 0.300 3.700 4 O -0.402 6.402 5 C -0.102 4.102 6 C -0.053 4.053 7 N -0.290 5.290 8 C -0.039 4.039 9 C -0.005 4.005 10 C -0.580 4.580 11 H 0.083 0.917 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.794 3.206 15 H -0.182 1.182 16 H -0.205 1.205 17 H -0.203 1.203 18 C -0.232 4.232 19 C -0.194 4.194 20 H 0.083 0.917 21 H 0.064 0.936 22 H 0.150 0.850 23 H 0.165 0.835 24 H 0.127 0.873 25 H 0.158 0.842 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.003 0.997 29 H 0.007 0.993 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.667 -8.307 16.007 18.047 hybrid contribution 0.565 0.635 -1.052 1.353 sum 1.231 -7.672 14.955 16.853 Atomic orbital electron populations 1.23433 0.75481 1.05338 1.01959 1.86473 1.24540 1.33459 1.84465 1.24041 0.92844 0.81064 0.72073 1.90676 1.67590 1.37164 1.44791 1.20923 0.86701 0.95341 1.07262 1.21359 0.99642 0.93754 0.90569 1.60166 1.60989 1.07023 1.00835 1.21733 0.94851 0.98168 0.89137 1.18908 0.94806 0.94520 0.92292 1.21641 1.23985 1.20255 0.92107 0.91730 1.26043 0.95759 0.95513 1.02696 1.70136 1.34400 1.29818 1.23150 0.85329 0.78416 0.78543 0.78326 1.18162 1.20472 1.20279 1.23698 0.90916 1.04372 1.04181 1.23176 1.00395 1.00187 0.95679 0.91675 0.93553 0.85009 0.83509 0.87283 0.84233 0.95560 0.92386 0.99705 0.99341 0.92780 0.85890 0.89335 0.89298 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.88 16 2 O -0.37 -10.11 10.56 -51.41 -0.54 -10.65 16 3 C 0.46 14.05 7.87 71.24 0.56 14.61 16 4 O -0.52 -19.58 15.41 21.97 0.34 -19.24 16 5 C -0.06 -1.60 5.52 29.85 0.16 -1.43 16 6 C 0.04 1.11 1.14 3.53 0.00 1.11 16 7 N -0.66 -25.13 6.07 -470.17 -2.85 -27.98 16 8 C 0.09 3.85 5.49 86.30 0.47 4.32 16 9 C 0.03 1.79 5.27 29.85 0.16 1.95 16 10 C -0.54 -31.52 9.11 25.60 0.23 -31.28 16 11 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 12 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 13 N -0.93 -58.73 13.29 21.45 0.28 -58.45 16 14 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 15 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 C -0.19 -4.21 10.12 30.62 0.31 -3.90 16 19 C -0.16 -3.65 10.00 30.62 0.31 -3.34 16 20 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 21 H 0.05 1.18 8.13 -2.38 -0.02 1.16 16 22 H 0.13 1.87 8.14 -2.39 -0.02 1.86 16 23 H 0.15 2.32 8.11 -2.39 -0.02 2.30 16 24 H 0.11 2.71 6.95 -2.38 -0.02 2.70 16 25 H 0.34 12.80 8.65 -89.69 -0.78 12.02 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 2.45 6.77 -2.39 -0.02 2.44 16 28 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 29 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -73.06 294.66 3.43 -69.64 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.31 Total: 15.62 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 3.87 Total: -15.77 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -2.57 Total: -86.43 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.20 Total: -29.90 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -73.06 3.43 -69.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593057882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.558 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds