Wall clock time and date at job start Mon Mar 30 2020 02:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99382 * 2 1 4 4 H 1.08992 * 109.47096 * 29.99755 * 3 2 1 5 5 C 1.50700 * 109.46746 * 150.00019 * 3 2 1 6 6 O 1.21297 * 120.00062 * 23.21109 * 5 3 2 7 7 N 1.34776 * 119.99982 * 203.21097 * 5 3 2 8 8 C 1.46505 * 119.99736 * 5.68550 * 7 5 3 9 9 C 1.37100 * 120.00271 * 185.68105 * 7 5 3 10 10 H 1.08002 * 119.99575 * 353.01355 * 9 7 5 11 11 C 1.38950 * 120.00014 * 173.01434 * 9 7 5 12 12 N 1.31405 * 119.99891 * 5.37900 * 11 9 7 13 13 Si 1.86795 * 119.99657 * 185.38177 * 11 9 7 14 14 H 1.48495 * 109.47523 * 89.99990 * 13 11 9 15 15 H 1.48504 * 109.46726 * 209.99933 * 13 11 9 16 16 H 1.48498 * 109.47443 * 329.99657 * 13 11 9 17 17 C 1.53000 * 109.46802 * 269.99545 * 3 2 1 18 18 C 1.53778 * 113.61395 * 159.99628 * 17 3 2 19 19 C 1.53956 * 87.01920 * 220.04893 * 18 17 3 20 20 C 1.53783 * 87.11345 * 25.36267 * 19 18 17 21 21 H 1.08995 * 109.47426 * 300.00218 * 1 2 3 22 22 H 1.09002 * 109.47134 * 60.00330 * 1 2 3 23 23 H 1.09005 * 109.47041 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47091 * 5.45192 * 8 7 5 25 25 H 1.09003 * 109.46692 * 125.44978 * 8 7 5 26 26 H 1.08996 * 109.46865 * 245.45112 * 8 7 5 27 27 H 0.97000 * 120.00030 * 179.97438 * 12 11 9 28 28 H 1.08996 * 112.85213 * 291.18985 * 17 3 2 29 29 H 1.09004 * 113.61104 * 334.56520 * 18 17 3 30 30 H 1.09001 * 113.61823 * 105.46996 * 18 17 3 31 31 H 1.08997 * 113.53716 * 270.80761 * 19 18 17 32 32 H 1.09002 * 113.73802 * 139.94157 * 19 18 17 33 33 H 1.08992 * 113.61264 * 220.09406 * 20 19 18 34 34 H 1.08996 * 113.61665 * 89.18182 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 1.9994 0.5138 5 6 3.3385 1.2641 0.7104 6 8 3.9467 0.2183 0.7987 7 7 3.8508 2.3889 1.2477 8 6 3.0625 3.6238 1.2514 9 6 5.1095 2.3776 1.7909 10 1 5.6461 1.4456 1.8910 11 6 5.6949 3.5651 2.2128 12 7 5.0041 4.6826 2.1895 13 14 7.4638 3.5727 2.8128 14 1 8.3745 3.8207 1.6663 15 1 7.6386 4.6454 3.8248 16 1 7.7848 2.2581 3.4245 17 6 2.2176 1.7714 -1.4425 18 6 2.3683 3.2954 -1.5821 19 6 1.5052 3.1837 -2.8520 20 6 0.9100 1.9041 -2.2411 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 2.0626 3.4177 0.8696 25 1 2.9910 4.0061 2.2697 26 1 3.5475 4.3663 0.6177 27 1 5.4126 5.5115 2.4844 28 1 2.9914 1.2067 -1.9625 29 1 1.8918 3.8567 -0.7783 30 1 3.3917 3.6171 -1.7754 31 1 2.0847 3.0064 -3.7580 32 1 0.7820 3.9916 -2.9635 33 1 0.7579 1.1042 -2.9657 34 1 0.0342 2.0843 -1.6178 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597012683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:27 Heat of formation + Delta-G solvation = -36.125722 kcal Electronic energy + Delta-G solvation = -16817.109103 eV Core-core repulsion = 14138.140273 eV Total energy + Delta-G solvation = -2678.968830 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.76957 -37.54721 -36.48201 -34.57016 -31.60976 -29.14409 -26.57867 -26.13982 -25.05985 -24.46785 -22.64877 -19.37825 -18.89321 -17.00204 -16.62049 -15.70870 -15.56647 -14.99497 -14.67303 -13.92437 -13.81716 -13.41413 -13.19797 -12.48403 -12.15789 -11.88700 -11.73782 -11.59671 -11.46002 -11.08891 -10.97615 -10.68241 -10.49829 -10.33999 -10.23727 -10.04969 -9.84700 -9.09932 -8.99313 -8.12295 -7.81701 -6.21679 -3.77967 3.17650 3.26007 3.31855 3.81662 3.96301 4.27946 4.79183 4.89927 4.97106 5.08070 5.21195 5.33744 5.42990 5.57619 5.61102 5.78202 5.83652 5.88217 5.96653 6.00239 6.08819 6.17644 6.30677 6.41020 6.50151 6.76317 7.09639 7.40118 7.53765 7.58969 8.11882 8.53601 9.23121 9.46896 10.02566 10.72639 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.034194 B = 0.008769 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.655533 B = 3192.365507 C = 3630.997394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.359 6.359 3 C 0.090 3.910 4 H 0.071 0.929 5 C 0.444 3.556 6 O -0.579 6.579 7 N -0.446 5.446 8 C 0.111 3.889 9 C -0.296 4.296 10 H 0.104 0.896 11 C 0.026 3.974 12 N -0.891 5.891 13 Si 0.931 3.069 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.118 4.118 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.136 4.136 21 H 0.036 0.964 22 H 0.045 0.955 23 H 0.081 0.919 24 H 0.023 0.977 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 0.958 -6.323 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.276 6.276 3 C 0.028 3.972 4 H 0.089 0.911 5 C 0.231 3.769 6 O -0.462 6.462 7 N -0.166 5.166 8 C -0.032 4.032 9 C -0.424 4.424 10 H 0.122 0.878 11 C -0.176 4.176 12 N -0.532 5.532 13 Si 0.758 3.242 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.137 4.137 18 C -0.174 4.174 19 C -0.179 4.179 20 C -0.173 4.173 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.099 0.901 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.636 0.484 -6.201 10.643 hybrid contribution 0.575 0.499 0.332 0.830 sum -8.060 0.983 -5.870 10.019 Atomic orbital electron populations 1.22959 0.82399 1.02327 0.99810 1.88026 1.18189 1.26561 1.94866 1.21999 0.95164 0.84878 0.95115 0.91095 1.19597 0.87647 0.84822 0.84819 1.90515 1.62532 1.30230 1.62973 1.43616 1.14963 1.08052 1.49951 1.22068 0.90546 0.86935 1.03614 1.19813 0.90704 0.95366 1.36514 0.87842 1.25291 1.00074 0.94789 0.97397 1.70144 1.35940 0.99319 1.47835 0.85840 0.81937 0.78077 0.78357 1.20378 1.20942 1.19445 1.22894 0.98568 0.97075 0.95191 1.23193 1.01014 0.95449 0.97710 1.22860 0.99422 0.97753 0.97898 1.22992 0.97055 0.98020 0.99279 0.94531 0.93671 0.90061 0.95909 0.91013 0.91188 0.92443 0.88610 0.89066 0.90887 0.90483 0.91667 0.91553 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.59 101.05 1.07 1.38 16 2 O -0.36 -7.24 9.95 -53.98 -0.54 -7.78 16 3 C 0.09 1.81 1.94 -27.88 -0.05 1.75 16 4 H 0.07 1.30 5.66 -51.93 -0.29 1.01 16 5 C 0.44 11.50 6.82 -10.99 -0.07 11.42 16 6 O -0.58 -17.37 16.25 -13.20 -0.21 -17.59 16 7 N -0.45 -11.69 3.03 -122.19 -0.37 -12.06 16 8 C 0.11 2.52 6.90 59.85 0.41 2.93 16 9 C -0.30 -8.41 9.56 -14.93 -0.14 -8.56 16 10 H 0.10 3.10 7.18 -52.49 -0.38 2.73 16 11 C 0.03 0.68 5.46 -17.47 -0.10 0.58 16 12 N -0.89 -23.28 9.46 55.50 0.52 -22.76 16 13 Si 0.93 21.06 29.56 -169.99 -5.02 16.03 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C -0.12 -2.05 3.33 -89.81 -0.30 -2.35 16 18 C -0.14 -2.15 6.09 -25.83 -0.16 -2.31 16 19 C -0.14 -1.79 8.09 -25.83 -0.21 -2.00 16 20 C -0.14 -1.81 6.12 -25.91 -0.16 -1.97 16 21 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 22 H 0.04 0.55 5.09 -51.93 -0.26 0.28 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.02 0.43 3.56 -51.93 -0.18 0.25 16 25 H 0.07 1.73 6.97 -51.93 -0.36 1.37 16 26 H 0.07 1.63 6.79 -51.93 -0.35 1.27 16 27 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 29 H 0.09 1.41 5.50 -51.93 -0.29 1.13 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.96 6.57 -51.93 -0.34 0.62 16 LS Contribution 267.00 15.07 4.02 4.02 Total: -1.00 -31.84 267.00 -5.86 -37.70 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.55 Total: 1.54 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 0.29 Total: 0.89 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.16 Total: -34.82 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.75 Total: -25.37 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.84 -5.86 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.573 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds