Wall clock time and date at job start Mon Mar 30 2020 02:46:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42908 * 113.99382 * 2 1
4 4 H 1.08992 * 109.47096 * 29.99755 * 3 2 1
5 5 C 1.50700 * 109.46746 * 150.00019 * 3 2 1
6 6 O 1.21297 * 120.00062 * 23.21109 * 5 3 2
7 7 N 1.34776 * 119.99982 * 203.21097 * 5 3 2
8 8 C 1.46505 * 119.99736 * 5.68550 * 7 5 3
9 9 C 1.37100 * 120.00271 * 185.68105 * 7 5 3
10 10 H 1.08002 * 119.99575 * 353.01355 * 9 7 5
11 11 C 1.38950 * 120.00014 * 173.01434 * 9 7 5
12 12 N 1.31405 * 119.99891 * 5.37900 * 11 9 7
13 13 Si 1.86795 * 119.99657 * 185.38177 * 11 9 7
14 14 H 1.48495 * 109.47523 * 89.99990 * 13 11 9
15 15 H 1.48504 * 109.46726 * 209.99933 * 13 11 9
16 16 H 1.48498 * 109.47443 * 329.99657 * 13 11 9
17 17 C 1.53000 * 109.46802 * 269.99545 * 3 2 1
18 18 C 1.53778 * 113.61395 * 159.99628 * 17 3 2
19 19 C 1.53956 * 87.01920 * 220.04893 * 18 17 3
20 20 C 1.53783 * 87.11345 * 25.36267 * 19 18 17
21 21 H 1.08995 * 109.47426 * 300.00218 * 1 2 3
22 22 H 1.09002 * 109.47134 * 60.00330 * 1 2 3
23 23 H 1.09005 * 109.47041 * 180.02562 * 1 2 3
24 24 H 1.09000 * 109.47091 * 5.45192 * 8 7 5
25 25 H 1.09003 * 109.46692 * 125.44978 * 8 7 5
26 26 H 1.08996 * 109.46865 * 245.45112 * 8 7 5
27 27 H 0.97000 * 120.00030 * 179.97438 * 12 11 9
28 28 H 1.08996 * 112.85213 * 291.18985 * 17 3 2
29 29 H 1.09004 * 113.61104 * 334.56520 * 18 17 3
30 30 H 1.09001 * 113.61823 * 105.46996 * 18 17 3
31 31 H 1.08997 * 113.53716 * 270.80761 * 19 18 17
32 32 H 1.09002 * 113.73802 * 139.94157 * 19 18 17
33 33 H 1.08992 * 113.61264 * 220.09406 * 20 19 18
34 34 H 1.08996 * 113.61665 * 89.18182 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3056 0.0000
4 1 1.3448 1.9994 0.5138
5 6 3.3385 1.2641 0.7104
6 8 3.9467 0.2183 0.7987
7 7 3.8508 2.3889 1.2477
8 6 3.0625 3.6238 1.2514
9 6 5.1095 2.3776 1.7909
10 1 5.6461 1.4456 1.8910
11 6 5.6949 3.5651 2.2128
12 7 5.0041 4.6826 2.1895
13 14 7.4638 3.5727 2.8128
14 1 8.3745 3.8207 1.6663
15 1 7.6386 4.6454 3.8248
16 1 7.7848 2.2581 3.4245
17 6 2.2176 1.7714 -1.4425
18 6 2.3683 3.2954 -1.5821
19 6 1.5052 3.1837 -2.8520
20 6 0.9100 1.9041 -2.2411
21 1 -0.3634 0.5138 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 2.0626 3.4177 0.8696
25 1 2.9910 4.0061 2.2697
26 1 3.5475 4.3663 0.6177
27 1 5.4126 5.5115 2.4844
28 1 2.9914 1.2067 -1.9625
29 1 1.8918 3.8567 -0.7783
30 1 3.3917 3.6171 -1.7754
31 1 2.0847 3.0064 -3.7580
32 1 0.7820 3.9916 -2.9635
33 1 0.7579 1.1042 -2.9657
34 1 0.0342 2.0843 -1.6178
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597012683.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:46:26
Heat of formation + Delta-G solvation = -57.034057 kcal
Electronic energy + Delta-G solvation = -16818.015757 eV
Core-core repulsion = 14138.140273 eV
Total energy + Delta-G solvation = -2679.875484 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.32841 -39.26202 -37.88584 -36.62855 -33.67400 -30.67651 -28.41033 -27.33705
-26.44011 -26.20671 -24.15898 -20.92361 -20.39806 -19.01751 -18.35606 -17.17201
-17.07882 -16.72624 -16.15961 -15.72943 -15.49627 -15.09310 -14.49961 -14.09869
-13.66180 -13.57813 -13.34355 -13.00561 -12.83100 -12.77131 -12.70629 -12.47244
-12.15075 -11.96825 -11.76655 -11.31574 -11.16304 -10.98904 -10.59036 -9.99969
-9.89214 -8.26573 -5.93163 1.34644 1.38981 1.51212 1.93251 2.19202
2.60665 3.06393 3.30282 3.65947 3.77587 3.81451 3.89217 4.00125
4.24937 4.44626 4.54634 4.59963 4.61959 4.79770 4.84247 4.91340
4.95584 5.11122 5.14710 5.19807 5.31233 5.41811 5.49279 5.57594
5.95177 6.24097 6.50619 7.15006 7.44107 7.99884 8.64406
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.034194 B = 0.008769 C = 0.007710
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 818.655533 B = 3192.365507 C = 3630.997394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.396 6.396
3 C 0.104 3.896
4 H 0.092 0.908
5 C 0.425 3.575
6 O -0.636 6.636
7 N -0.454 5.454
8 C 0.124 3.876
9 C -0.344 4.344
10 H 0.071 0.929
11 C 0.000 4.000
12 N -0.892 5.892
13 Si 0.992 3.008
14 H -0.271 1.271
15 H -0.265 1.265
16 H -0.278 1.278
17 C -0.131 4.131
18 C -0.141 4.141
19 C -0.125 4.125
20 C -0.119 4.119
21 H 0.047 0.953
22 H 0.072 0.928
23 H 0.098 0.902
24 H 0.062 0.938
25 H 0.054 0.946
26 H 0.062 0.938
27 H 0.273 0.727
28 H 0.066 0.934
29 H 0.096 0.904
30 H 0.048 0.952
31 H 0.082 0.918
32 H 0.093 0.907
33 H 0.078 0.922
34 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.825 2.459 -7.108 13.182
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 O -0.314 6.314
3 C 0.043 3.957
4 H 0.110 0.890
5 C 0.214 3.786
6 O -0.524 6.524
7 N -0.174 5.174
8 C -0.018 4.018
9 C -0.472 4.472
10 H 0.089 0.911
11 C -0.202 4.202
12 N -0.532 5.532
13 Si 0.815 3.185
14 H -0.196 1.196
15 H -0.189 1.189
16 H -0.203 1.203
17 C -0.151 4.151
18 C -0.179 4.179
19 C -0.162 4.162
20 C -0.157 4.157
21 H 0.066 0.934
22 H 0.090 0.910
23 H 0.117 0.883
24 H 0.080 0.920
25 H 0.073 0.927
26 H 0.080 0.920
27 H 0.084 0.916
28 H 0.085 0.915
29 H 0.115 0.885
30 H 0.067 0.933
31 H 0.100 0.900
32 H 0.111 0.889
33 H 0.097 0.903
34 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -10.401 2.035 -6.992 12.696
hybrid contribution 1.104 0.030 0.614 1.264
sum -9.296 2.065 -6.378 11.462
Atomic orbital electron populations
1.23287 0.79173 1.04231 1.01602 1.87978 1.21707 1.26601 1.95146
1.21844 0.92034 0.85716 0.96103 0.89008 1.20780 0.89661 0.83814
0.84317 1.90454 1.64745 1.32189 1.65042 1.43864 1.14725 1.09324
1.49440 1.21986 0.91941 0.85366 1.02530 1.19718 0.92536 0.95083
1.39832 0.91081 1.26015 1.03612 0.94016 0.96520 1.70222 1.37027
0.99539 1.46402 0.84958 0.77173 0.78039 0.78295 1.19611 1.18925
1.20292 1.22947 1.00835 0.97639 0.93668 1.23226 1.00540 0.94063
1.00047 1.22799 0.98922 0.98186 0.96278 1.22980 0.95284 0.98654
0.98735 0.93432 0.91009 0.88318 0.91997 0.92713 0.91972 0.91609
0.91505 0.88523 0.93337 0.89956 0.88886 0.90335 0.88101
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.32 10.59 113.37 1.20 1.53 16
2 O -0.40 -15.74 9.95 -131.06 -1.30 -17.05 16
3 C 0.10 4.15 1.94 29.85 0.06 4.21 16
4 H 0.09 3.18 5.66 -2.39 -0.01 3.17 16
5 C 0.43 22.84 6.82 87.66 0.60 23.44 16
6 O -0.64 -40.47 16.25 14.84 0.24 -40.23 16
7 N -0.45 -24.60 3.03 -658.87 -1.99 -26.59 16
8 C 0.12 5.57 6.90 127.77 0.88 6.45 16
9 C -0.34 -20.35 9.56 84.04 0.80 -19.55 16
10 H 0.07 4.56 7.18 -2.91 -0.02 4.54 16
11 C 0.00 -0.02 5.46 84.93 0.46 0.44 16
12 N -0.89 -46.22 9.46 21.66 0.20 -46.02 16
13 Si 0.99 43.28 29.56 68.60 2.03 45.31 16
14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16
15 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16
16 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16
17 C -0.13 -4.45 3.33 -10.27 -0.03 -4.48 16
18 C -0.14 -4.24 6.09 31.18 0.19 -4.05 16
19 C -0.12 -2.71 8.09 31.18 0.25 -2.45 16
20 C -0.12 -2.74 6.12 31.12 0.19 -2.55 16
21 H 0.05 1.11 8.08 -2.39 -0.02 1.09 16
22 H 0.07 1.44 5.09 -2.39 -0.01 1.43 16
23 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16
24 H 0.06 2.25 3.56 -2.39 -0.01 2.24 16
25 H 0.05 2.63 6.97 -2.39 -0.02 2.61 16
26 H 0.06 2.87 6.79 -2.39 -0.02 2.86 16
27 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16
28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16
29 H 0.10 2.75 5.50 -2.38 -0.01 2.74 16
30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
34 H 0.10 1.91 6.57 -2.39 -0.02 1.89 16
Total: -1.00 -72.71 267.00 4.88 -67.84
By element:
Atomic # 1 Polarization: 12.66 SS G_CDS: 1.10 Total: 13.76 kcal
Atomic # 6 Polarization: -1.63 SS G_CDS: 4.60 Total: 2.97 kcal
Atomic # 7 Polarization: -70.82 SS G_CDS: -1.79 Total: -72.61 kcal
Atomic # 8 Polarization: -56.21 SS G_CDS: -1.06 Total: -57.28 kcal
Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal
Total: -72.71 4.88 -67.84 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597012683.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.804 kcal
(2) G-P(sol) polarization free energy of solvation -72.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.034 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds