Wall clock time and date at job start Mon Mar 30 2020 02:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99382 * 2 1 4 4 H 1.08992 * 109.47096 * 29.99755 * 3 2 1 5 5 C 1.50700 * 109.46746 * 150.00019 * 3 2 1 6 6 O 1.21297 * 120.00062 * 23.21109 * 5 3 2 7 7 N 1.34776 * 119.99982 * 203.21097 * 5 3 2 8 8 C 1.46505 * 119.99736 * 5.68550 * 7 5 3 9 9 C 1.37100 * 120.00271 * 185.68105 * 7 5 3 10 10 H 1.08002 * 119.99575 * 353.01355 * 9 7 5 11 11 C 1.38950 * 120.00014 * 173.01434 * 9 7 5 12 12 N 1.31405 * 119.99891 * 5.37900 * 11 9 7 13 13 Si 1.86795 * 119.99657 * 185.38177 * 11 9 7 14 14 H 1.48495 * 109.47523 * 89.99990 * 13 11 9 15 15 H 1.48504 * 109.46726 * 209.99933 * 13 11 9 16 16 H 1.48498 * 109.47443 * 329.99657 * 13 11 9 17 17 C 1.53000 * 109.46802 * 269.99545 * 3 2 1 18 18 C 1.53778 * 113.61395 * 159.99628 * 17 3 2 19 19 C 1.53956 * 87.01920 * 220.04893 * 18 17 3 20 20 C 1.53783 * 87.11345 * 25.36267 * 19 18 17 21 21 H 1.08995 * 109.47426 * 300.00218 * 1 2 3 22 22 H 1.09002 * 109.47134 * 60.00330 * 1 2 3 23 23 H 1.09005 * 109.47041 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47091 * 5.45192 * 8 7 5 25 25 H 1.09003 * 109.46692 * 125.44978 * 8 7 5 26 26 H 1.08996 * 109.46865 * 245.45112 * 8 7 5 27 27 H 0.97000 * 120.00030 * 179.97438 * 12 11 9 28 28 H 1.08996 * 112.85213 * 291.18985 * 17 3 2 29 29 H 1.09004 * 113.61104 * 334.56520 * 18 17 3 30 30 H 1.09001 * 113.61823 * 105.46996 * 18 17 3 31 31 H 1.08997 * 113.53716 * 270.80761 * 19 18 17 32 32 H 1.09002 * 113.73802 * 139.94157 * 19 18 17 33 33 H 1.08992 * 113.61264 * 220.09406 * 20 19 18 34 34 H 1.08996 * 113.61665 * 89.18182 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 1.9994 0.5138 5 6 3.3385 1.2641 0.7104 6 8 3.9467 0.2183 0.7987 7 7 3.8508 2.3889 1.2477 8 6 3.0625 3.6238 1.2514 9 6 5.1095 2.3776 1.7909 10 1 5.6461 1.4456 1.8910 11 6 5.6949 3.5651 2.2128 12 7 5.0041 4.6826 2.1895 13 14 7.4638 3.5727 2.8128 14 1 8.3745 3.8207 1.6663 15 1 7.6386 4.6454 3.8248 16 1 7.7848 2.2581 3.4245 17 6 2.2176 1.7714 -1.4425 18 6 2.3683 3.2954 -1.5821 19 6 1.5052 3.1837 -2.8520 20 6 0.9100 1.9041 -2.2411 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 2.0626 3.4177 0.8696 25 1 2.9910 4.0061 2.2697 26 1 3.5475 4.3663 0.6177 27 1 5.4126 5.5115 2.4844 28 1 2.9914 1.2067 -1.9625 29 1 1.8918 3.8567 -0.7783 30 1 3.3917 3.6171 -1.7754 31 1 2.0847 3.0064 -3.7580 32 1 0.7820 3.9916 -2.9635 33 1 0.7579 1.1042 -2.9657 34 1 0.0342 2.0843 -1.6178 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597012683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:26 Heat of formation + Delta-G solvation = -57.034057 kcal Electronic energy + Delta-G solvation = -16818.015757 eV Core-core repulsion = 14138.140273 eV Total energy + Delta-G solvation = -2679.875484 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.32841 -39.26202 -37.88584 -36.62855 -33.67400 -30.67651 -28.41033 -27.33705 -26.44011 -26.20671 -24.15898 -20.92361 -20.39806 -19.01751 -18.35606 -17.17201 -17.07882 -16.72624 -16.15961 -15.72943 -15.49627 -15.09310 -14.49961 -14.09869 -13.66180 -13.57813 -13.34355 -13.00561 -12.83100 -12.77131 -12.70629 -12.47244 -12.15075 -11.96825 -11.76655 -11.31574 -11.16304 -10.98904 -10.59036 -9.99969 -9.89214 -8.26573 -5.93163 1.34644 1.38981 1.51212 1.93251 2.19202 2.60665 3.06393 3.30282 3.65947 3.77587 3.81451 3.89217 4.00125 4.24937 4.44626 4.54634 4.59963 4.61959 4.79770 4.84247 4.91340 4.95584 5.11122 5.14710 5.19807 5.31233 5.41811 5.49279 5.57594 5.95177 6.24097 6.50619 7.15006 7.44107 7.99884 8.64406 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.034194 B = 0.008769 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.655533 B = 3192.365507 C = 3630.997394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.396 6.396 3 C 0.104 3.896 4 H 0.092 0.908 5 C 0.425 3.575 6 O -0.636 6.636 7 N -0.454 5.454 8 C 0.124 3.876 9 C -0.344 4.344 10 H 0.071 0.929 11 C 0.000 4.000 12 N -0.892 5.892 13 Si 0.992 3.008 14 H -0.271 1.271 15 H -0.265 1.265 16 H -0.278 1.278 17 C -0.131 4.131 18 C -0.141 4.141 19 C -0.125 4.125 20 C -0.119 4.119 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.273 0.727 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.825 2.459 -7.108 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.314 6.314 3 C 0.043 3.957 4 H 0.110 0.890 5 C 0.214 3.786 6 O -0.524 6.524 7 N -0.174 5.174 8 C -0.018 4.018 9 C -0.472 4.472 10 H 0.089 0.911 11 C -0.202 4.202 12 N -0.532 5.532 13 Si 0.815 3.185 14 H -0.196 1.196 15 H -0.189 1.189 16 H -0.203 1.203 17 C -0.151 4.151 18 C -0.179 4.179 19 C -0.162 4.162 20 C -0.157 4.157 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.117 0.883 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.401 2.035 -6.992 12.696 hybrid contribution 1.104 0.030 0.614 1.264 sum -9.296 2.065 -6.378 11.462 Atomic orbital electron populations 1.23287 0.79173 1.04231 1.01602 1.87978 1.21707 1.26601 1.95146 1.21844 0.92034 0.85716 0.96103 0.89008 1.20780 0.89661 0.83814 0.84317 1.90454 1.64745 1.32189 1.65042 1.43864 1.14725 1.09324 1.49440 1.21986 0.91941 0.85366 1.02530 1.19718 0.92536 0.95083 1.39832 0.91081 1.26015 1.03612 0.94016 0.96520 1.70222 1.37027 0.99539 1.46402 0.84958 0.77173 0.78039 0.78295 1.19611 1.18925 1.20292 1.22947 1.00835 0.97639 0.93668 1.23226 1.00540 0.94063 1.00047 1.22799 0.98922 0.98186 0.96278 1.22980 0.95284 0.98654 0.98735 0.93432 0.91009 0.88318 0.91997 0.92713 0.91972 0.91609 0.91505 0.88523 0.93337 0.89956 0.88886 0.90335 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 10.59 113.37 1.20 1.53 16 2 O -0.40 -15.74 9.95 -131.06 -1.30 -17.05 16 3 C 0.10 4.15 1.94 29.85 0.06 4.21 16 4 H 0.09 3.18 5.66 -2.39 -0.01 3.17 16 5 C 0.43 22.84 6.82 87.66 0.60 23.44 16 6 O -0.64 -40.47 16.25 14.84 0.24 -40.23 16 7 N -0.45 -24.60 3.03 -658.87 -1.99 -26.59 16 8 C 0.12 5.57 6.90 127.77 0.88 6.45 16 9 C -0.34 -20.35 9.56 84.04 0.80 -19.55 16 10 H 0.07 4.56 7.18 -2.91 -0.02 4.54 16 11 C 0.00 -0.02 5.46 84.93 0.46 0.44 16 12 N -0.89 -46.22 9.46 21.66 0.20 -46.02 16 13 Si 0.99 43.28 29.56 68.60 2.03 45.31 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 17 C -0.13 -4.45 3.33 -10.27 -0.03 -4.48 16 18 C -0.14 -4.24 6.09 31.18 0.19 -4.05 16 19 C -0.12 -2.71 8.09 31.18 0.25 -2.45 16 20 C -0.12 -2.74 6.12 31.12 0.19 -2.55 16 21 H 0.05 1.11 8.08 -2.39 -0.02 1.09 16 22 H 0.07 1.44 5.09 -2.39 -0.01 1.43 16 23 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.06 2.25 3.56 -2.39 -0.01 2.24 16 25 H 0.05 2.63 6.97 -2.39 -0.02 2.61 16 26 H 0.06 2.87 6.79 -2.39 -0.02 2.86 16 27 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.10 2.75 5.50 -2.38 -0.01 2.74 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 1.91 6.57 -2.39 -0.02 1.89 16 Total: -1.00 -72.71 267.00 4.88 -67.84 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.10 Total: 13.76 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 4.60 Total: 2.97 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -1.79 Total: -72.61 kcal Atomic # 8 Polarization: -56.21 SS G_CDS: -1.06 Total: -57.28 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -72.71 4.88 -67.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.804 kcal (2) G-P(sol) polarization free energy of solvation -72.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds