Wall clock time and date at job start Mon Mar 30 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99821 * 2 1 4 4 C 1.53006 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46957 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99692 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00142 * 180.02562 * 6 5 4 9 9 C 1.47067 * 136.05762 * 359.62722 * 8 6 5 10 10 C 1.53751 * 87.88788 * 152.96729 * 9 8 6 11 11 C 1.50700 * 114.26847 * 139.79597 * 10 9 8 12 12 H 1.08002 * 119.99181 * 266.47065 * 11 10 9 13 13 C 1.37871 * 120.00236 * 86.46904 * 11 10 9 14 14 N 1.31521 * 119.99795 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00291 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47374 * 89.99560 * 15 13 11 17 17 H 1.48501 * 109.47347 * 209.99885 * 15 13 11 18 18 H 1.48500 * 109.46791 * 330.00008 * 15 13 11 19 19 C 1.47067 * 136.05471 * 179.97438 * 8 6 5 20 20 H 1.09000 * 109.46841 * 59.99911 * 1 2 3 21 21 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47367 * 300.00715 * 1 2 3 23 23 H 1.09000 * 109.47490 * 59.99859 * 3 2 1 24 24 H 1.09001 * 109.47232 * 299.99213 * 3 2 1 25 25 H 1.08993 * 109.46955 * 299.99993 * 4 3 2 26 26 H 1.09000 * 109.47050 * 59.99822 * 4 3 2 27 27 H 1.08993 * 109.47839 * 299.99931 * 5 4 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 5 4 3 29 29 H 1.09004 * 113.46270 * 267.69734 * 9 8 6 30 30 H 1.09001 * 113.46751 * 38.13094 * 9 8 6 31 31 H 1.09003 * 114.39060 * 272.67593 * 10 9 8 32 32 H 0.96995 * 119.99694 * 180.02562 * 14 13 11 33 33 H 1.08993 * 113.46865 * 321.86494 * 19 8 6 34 34 H 1.09004 * 113.46495 * 92.24945 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6601 2.4634 0.0000 7 8 6.1816 1.3685 0.0009 8 7 6.4240 3.5738 0.0000 9 6 6.1835 5.0246 -0.0066 10 6 7.5392 5.1952 0.6983 11 6 8.3496 6.3670 0.2073 12 1 9.0838 6.2269 -0.5723 13 6 8.1537 7.6178 0.7532 14 7 8.8606 8.6405 0.3243 15 14 6.8843 7.8599 2.1020 16 1 7.5239 7.6548 3.4264 17 1 6.3367 9.2381 2.0248 18 1 5.7830 6.8792 1.9270 19 6 7.8650 3.8676 0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.6886 1.8465 0.8900 24 1 1.6887 1.8464 -0.8901 25 1 3.8567 0.6439 0.8908 26 1 3.8574 0.6435 -0.8891 27 1 3.8365 3.1228 -0.8904 28 1 3.8358 3.1238 0.8896 29 1 6.1575 5.4557 -1.0075 30 1 5.3333 5.3265 0.6051 31 1 7.4928 5.1287 1.7853 32 1 8.7231 9.5204 0.7086 33 1 8.4472 3.1840 0.6182 34 1 8.2828 3.9926 -0.9985 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598036217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:52 Heat of formation + Delta-G solvation = -56.661395 kcal Electronic energy + Delta-G solvation = -15398.726440 eV Core-core repulsion = 12718.867116 eV Total energy + Delta-G solvation = -2679.859324 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.70293 -38.17631 -37.32017 -33.54969 -32.67335 -29.91669 -27.88318 -26.12883 -25.12905 -24.72205 -21.80046 -20.07331 -18.32347 -17.23881 -16.75048 -16.44227 -16.32253 -15.30473 -15.13729 -14.77573 -14.49013 -13.84558 -13.30005 -12.93118 -12.46669 -12.22807 -12.10002 -11.86045 -11.78236 -11.58145 -11.14690 -10.93661 -10.87933 -10.71213 -10.12818 -9.86042 -9.85219 -9.39278 -9.15456 -8.69237 -8.06297 -6.23907 -4.26758 3.03671 3.18169 3.24662 3.27426 3.29987 3.73612 4.27688 4.75166 4.86946 4.97992 5.00193 5.09844 5.15980 5.24846 5.35397 5.37520 5.41976 5.61474 5.72306 5.93223 6.06684 6.10247 6.22492 6.24246 6.31225 6.39615 6.53293 6.96885 7.11478 7.51782 8.29619 8.38473 8.61456 8.79949 9.37000 10.88155 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.040818 B = 0.005121 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.801672 B = 5466.142886 C = 5964.586587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.102 4.102 5 C -0.131 4.131 6 C 0.533 3.467 7 O -0.560 6.560 8 N -0.647 5.647 9 C 0.084 3.916 10 C -0.007 4.007 11 C -0.513 4.513 12 H 0.080 0.920 13 C 0.076 3.924 14 N -0.892 5.892 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.261 1.261 19 C 0.113 3.887 20 H 0.040 0.960 21 H 0.084 0.916 22 H 0.040 0.960 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.267 0.733 33 H 0.061 0.939 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.630 -9.185 0.162 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.140 4.140 5 C -0.171 4.171 6 C 0.322 3.678 7 O -0.440 6.440 8 N -0.381 5.381 9 C -0.039 4.039 10 C -0.026 4.026 11 C -0.551 4.551 12 H 0.098 0.902 13 C -0.127 4.127 14 N -0.529 5.529 15 Si 0.704 3.296 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.185 1.185 19 C -0.009 4.009 20 H 0.059 0.941 21 H 0.103 0.897 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.343 -9.906 0.179 17.432 hybrid contribution -0.959 0.679 0.626 1.332 sum -15.302 -9.227 0.805 17.887 Atomic orbital electron populations 1.22731 0.81204 1.02654 0.99920 1.87890 1.19539 1.28208 1.95412 1.22583 0.94299 0.84492 1.00179 1.21210 0.91773 0.96150 1.04854 1.21451 0.92640 0.98688 1.04365 1.20031 0.88612 0.82761 0.76353 1.90658 1.75178 1.26051 1.52092 1.49995 1.10278 1.06676 1.71119 1.23982 1.01509 0.76777 1.01619 1.20791 0.92207 0.93759 0.95875 1.20778 1.21546 0.90546 1.22245 0.90211 1.25018 0.95506 0.95873 0.96322 1.69896 1.40091 1.00467 1.42399 0.86875 0.82383 0.77726 0.82655 1.20130 1.21243 1.18544 1.23095 0.80754 0.96180 1.00863 0.94123 0.89709 0.94135 0.93236 0.93219 0.90361 0.90380 0.89066 0.89113 0.89675 0.92309 0.92177 0.92336 0.92048 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.73 10.70 -35.23 -0.38 -5.11 16 3 C 0.06 0.66 5.94 37.16 0.22 0.88 16 4 C -0.10 -1.33 4.87 -26.73 -0.13 -1.46 16 5 C -0.13 -1.77 5.53 -27.88 -0.15 -1.93 16 6 C 0.53 9.78 8.08 -10.98 -0.09 9.69 16 7 O -0.56 -12.07 16.76 5.56 0.09 -11.97 16 8 N -0.65 -12.34 3.69 -185.05 -0.68 -13.02 16 9 C 0.08 1.59 7.44 -8.37 -0.06 1.53 16 10 C -0.01 -0.14 2.96 -91.13 -0.27 -0.41 16 11 C -0.51 -13.15 9.38 -34.44 -0.32 -13.47 16 12 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 13 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 15 Si 0.88 19.59 27.15 -169.99 -4.62 14.98 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.26 -5.38 5.72 56.52 0.32 -5.06 16 19 C 0.11 2.26 8.17 -8.51 -0.07 2.19 16 20 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 21 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 26 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 30 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 31 H 0.06 1.30 7.03 -51.93 -0.37 0.94 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 LS Contribution 289.13 15.07 4.36 4.36 Total: -1.00 -30.29 289.13 -5.75 -36.04 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.44 Total: -0.88 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 0.14 Total: 0.31 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.09 Total: -37.72 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.28 Total: -17.08 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.62 Total: 14.98 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.29 -5.75 -36.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598036217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.622 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds