Wall clock time and date at job start Mon Mar 30 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99821 * 2 1 4 4 C 1.53006 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46957 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99692 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00142 * 180.02562 * 6 5 4 9 9 C 1.47067 * 136.05762 * 359.62722 * 8 6 5 10 10 C 1.53751 * 87.88788 * 152.96729 * 9 8 6 11 11 C 1.50700 * 114.26847 * 139.79597 * 10 9 8 12 12 H 1.08002 * 119.99181 * 266.47065 * 11 10 9 13 13 C 1.37871 * 120.00236 * 86.46904 * 11 10 9 14 14 N 1.31521 * 119.99795 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00291 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47374 * 89.99560 * 15 13 11 17 17 H 1.48501 * 109.47347 * 209.99885 * 15 13 11 18 18 H 1.48500 * 109.46791 * 330.00008 * 15 13 11 19 19 C 1.47067 * 136.05471 * 179.97438 * 8 6 5 20 20 H 1.09000 * 109.46841 * 59.99911 * 1 2 3 21 21 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47367 * 300.00715 * 1 2 3 23 23 H 1.09000 * 109.47490 * 59.99859 * 3 2 1 24 24 H 1.09001 * 109.47232 * 299.99213 * 3 2 1 25 25 H 1.08993 * 109.46955 * 299.99993 * 4 3 2 26 26 H 1.09000 * 109.47050 * 59.99822 * 4 3 2 27 27 H 1.08993 * 109.47839 * 299.99931 * 5 4 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 5 4 3 29 29 H 1.09004 * 113.46270 * 267.69734 * 9 8 6 30 30 H 1.09001 * 113.46751 * 38.13094 * 9 8 6 31 31 H 1.09003 * 114.39060 * 272.67593 * 10 9 8 32 32 H 0.96995 * 119.99694 * 180.02562 * 14 13 11 33 33 H 1.08993 * 113.46865 * 321.86494 * 19 8 6 34 34 H 1.09004 * 113.46495 * 92.24945 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6601 2.4634 0.0000 7 8 6.1816 1.3685 0.0009 8 7 6.4240 3.5738 0.0000 9 6 6.1835 5.0246 -0.0066 10 6 7.5392 5.1952 0.6983 11 6 8.3496 6.3670 0.2073 12 1 9.0838 6.2269 -0.5723 13 6 8.1537 7.6178 0.7532 14 7 8.8606 8.6405 0.3243 15 14 6.8843 7.8599 2.1020 16 1 7.5239 7.6548 3.4264 17 1 6.3367 9.2381 2.0248 18 1 5.7830 6.8792 1.9270 19 6 7.8650 3.8676 0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.6886 1.8465 0.8900 24 1 1.6887 1.8464 -0.8901 25 1 3.8567 0.6439 0.8908 26 1 3.8574 0.6435 -0.8891 27 1 3.8365 3.1228 -0.8904 28 1 3.8358 3.1238 0.8896 29 1 6.1575 5.4557 -1.0075 30 1 5.3333 5.3265 0.6051 31 1 7.4928 5.1287 1.7853 32 1 8.7231 9.5204 0.7086 33 1 8.4472 3.1840 0.6182 34 1 8.2828 3.9926 -0.9985 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598036217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:52 Heat of formation + Delta-G solvation = -77.567287 kcal Electronic energy + Delta-G solvation = -15399.632987 eV Core-core repulsion = 12718.867116 eV Total energy + Delta-G solvation = -2680.765871 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22029 -39.20341 -38.64815 -34.68203 -34.58768 -31.51594 -28.94587 -27.29836 -26.72878 -26.00191 -22.89262 -21.66027 -19.79985 -19.12536 -18.05719 -17.38613 -17.33055 -16.68335 -16.37952 -16.07550 -15.69614 -15.36138 -14.80101 -14.47191 -13.96297 -13.47534 -13.43748 -13.07120 -12.99231 -12.64587 -12.58655 -12.44959 -11.97925 -11.91281 -11.80385 -11.59818 -11.20695 -10.81755 -10.61207 -10.60232 -9.62619 -8.25857 -6.34191 1.44583 1.46770 1.57266 1.61752 1.94384 2.41308 2.85230 3.05997 3.53759 3.95915 4.01334 4.14005 4.21594 4.32117 4.44764 4.49580 4.52444 4.53964 4.58548 4.63841 4.64989 4.80748 4.83210 4.86876 4.96521 5.09670 5.23896 5.38951 5.62067 6.25642 6.29845 6.72282 6.89086 7.14234 7.33722 8.89771 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.040818 B = 0.005121 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.801672 B = 5466.142886 C = 5964.586587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.064 3.936 4 C -0.098 4.098 5 C -0.120 4.120 6 C 0.527 3.473 7 O -0.598 6.598 8 N -0.647 5.647 9 C 0.099 3.901 10 C -0.015 4.015 11 C -0.515 4.515 12 H 0.038 0.962 13 C 0.018 3.982 14 N -0.946 5.946 15 Si 0.943 3.057 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.224 1.224 19 C 0.110 3.890 20 H 0.052 0.948 21 H 0.094 0.906 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.268 0.732 33 H 0.060 0.940 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.772 -9.409 1.076 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.343 6.343 3 C -0.012 4.012 4 C -0.136 4.136 5 C -0.160 4.160 6 C 0.319 3.681 7 O -0.480 6.480 8 N -0.381 5.381 9 C -0.023 4.023 10 C -0.034 4.034 11 C -0.553 4.553 12 H 0.057 0.943 13 C -0.180 4.180 14 N -0.585 5.585 15 Si 0.766 3.234 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.147 1.147 19 C -0.013 4.013 20 H 0.071 0.929 21 H 0.112 0.888 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.511 -10.156 1.081 20.272 hybrid contribution 0.119 0.669 0.276 0.734 sum -17.392 -9.486 1.357 19.858 Atomic orbital electron populations 1.22930 0.79304 1.03765 1.01060 1.87843 1.21692 1.29059 1.95675 1.22557 0.92310 0.84469 1.01851 1.21130 0.93823 0.95616 1.03033 1.21475 0.88371 0.99383 1.06736 1.20974 0.90556 0.81686 0.74892 1.90647 1.76334 1.27438 1.53609 1.50000 1.09533 1.07158 1.71363 1.23745 1.00347 0.76461 1.01789 1.20724 0.93811 0.92555 0.96346 1.20938 1.21086 0.92273 1.21022 0.94340 1.25919 0.97810 0.95327 0.98966 1.70052 1.42633 1.01178 1.44609 0.85820 0.80504 0.78301 0.78791 1.20208 1.21466 1.14656 1.22990 0.82112 0.95637 1.00532 0.92937 0.88796 0.92959 0.91498 0.91465 0.92264 0.92282 0.86480 0.86563 0.89459 0.89466 0.91526 0.92337 0.92099 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -9.30 10.70 -148.98 -1.59 -10.89 16 3 C 0.06 1.19 5.94 71.98 0.43 1.62 16 4 C -0.10 -2.35 4.87 30.60 0.15 -2.20 16 5 C -0.12 -2.80 5.53 29.85 0.17 -2.63 16 6 C 0.53 18.19 8.08 87.66 0.71 18.89 16 7 O -0.60 -25.36 16.76 -3.03 -0.05 -25.41 16 8 N -0.65 -23.18 3.69 -857.78 -3.16 -26.34 16 9 C 0.10 3.41 7.44 83.27 0.62 4.03 16 10 C -0.01 -0.62 2.96 -11.13 -0.03 -0.65 16 11 C -0.52 -26.66 9.38 25.60 0.24 -26.42 16 12 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 13 C 0.02 0.96 5.47 84.65 0.46 1.42 16 14 N -0.95 -55.27 13.96 21.45 0.30 -54.97 16 15 Si 0.94 38.99 27.15 68.60 1.86 40.85 16 16 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 17 H -0.29 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.22 -7.84 5.72 99.48 0.57 -7.27 16 19 C 0.11 4.33 8.17 83.18 0.68 5.01 16 20 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 21 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 26 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 27 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.09 3.01 8.10 -2.38 -0.02 2.99 16 30 H 0.09 2.57 7.15 -2.39 -0.02 2.55 16 31 H 0.07 2.71 7.03 -2.39 -0.02 2.69 16 32 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.08 3.00 8.10 -2.38 -0.02 2.99 16 Total: -1.00 -66.93 289.13 2.94 -63.99 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.92 Total: 12.09 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 4.67 Total: 0.67 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -2.86 Total: -81.30 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -1.65 Total: -36.30 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.86 Total: 40.85 kcal Total: -66.93 2.94 -63.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598036217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.576 kcal (2) G-P(sol) polarization free energy of solvation -66.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds