Wall clock time and date at job start Mon Mar 30 2020 03:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48491 * 109.47394 * 270.00101 * 3 2 1 5 5 H 1.48506 * 109.46978 * 30.00425 * 3 2 1 6 6 H 1.48501 * 109.46928 * 149.99703 * 3 2 1 7 7 C 1.37877 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00227 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99515 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46475 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46882 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47279 * 180.02562 * 11 10 9 13 13 C 1.48168 * 110.99973 * 190.00059 * 12 11 10 14 14 C 1.52963 * 85.82896 * 223.07885 * 13 12 11 15 15 C 1.52803 * 121.29252 * 257.65137 * 14 13 12 16 16 C 1.53966 * 86.74358 * 209.10702 * 15 14 13 17 17 F 1.39904 * 113.57632 * 270.03682 * 16 15 14 18 18 C 1.52806 * 121.29145 * 148.65774 * 14 13 12 19 19 C 1.48163 * 111.00038 * 90.36897 * 12 11 10 20 20 H 0.97006 * 120.00217 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46865 * 60.00129 * 9 7 2 22 22 H 1.08996 * 109.46918 * 299.99686 * 9 7 2 23 23 H 1.08999 * 109.47288 * 60.00008 * 10 9 7 24 24 H 1.09000 * 109.47063 * 300.00184 * 10 9 7 25 25 H 1.09008 * 109.47333 * 60.00031 * 11 10 9 26 26 H 1.09006 * 109.47261 * 300.00368 * 11 10 9 27 27 H 1.08998 * 113.81242 * 108.85464 * 13 12 11 28 28 H 1.08997 * 113.81294 * 337.30481 * 13 12 11 29 29 H 1.09000 * 113.66543 * 323.57201 * 15 14 13 30 30 H 1.08999 * 113.66685 * 94.64414 * 15 14 13 31 31 H 1.09000 * 113.57713 * 139.25871 * 16 15 14 32 32 H 1.09003 * 113.66689 * 265.35324 * 18 14 13 33 33 H 1.09001 * 113.66826 * 36.33831 * 18 14 13 34 34 H 1.08994 * 113.81390 * 22.69200 * 19 12 11 35 35 H 1.08996 * 113.81126 * 251.14780 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5515 -2.6365 0.0012 12 7 6.0412 -4.0215 0.0004 13 6 7.5024 -4.0682 0.2418 14 6 7.5402 -5.1153 -0.8726 15 6 7.6644 -6.6054 -0.5576 16 6 8.3749 -6.7437 -1.9165 17 9 7.5038 -7.0075 -2.9791 18 6 8.7560 -5.2576 -1.7871 19 6 6.2277 -4.5180 -1.3830 20 1 -0.4851 0.8401 -0.0004 21 1 3.8745 -0.6807 0.8906 22 1 3.8752 -0.6796 -0.8895 23 1 3.6586 -3.1501 -0.8903 24 1 3.6578 -3.1505 0.8896 25 1 5.9142 -2.1230 0.8917 26 1 5.9156 -2.1223 -0.8883 27 1 7.7742 -4.4590 1.2223 28 1 8.0194 -3.1415 -0.0073 29 1 8.3072 -6.8200 0.2961 30 1 6.7068 -7.1238 -0.5097 31 1 9.2317 -7.4171 -1.8940 32 1 8.6693 -4.7007 -2.7201 33 1 9.7066 -5.0906 -1.2804 34 1 6.3618 -3.7265 -2.1203 35 1 5.4929 -5.2640 -1.6856 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685971841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:52 Heat of formation + Delta-G solvation = -5.141602 kcal Electronic energy + Delta-G solvation = -15538.023689 eV Core-core repulsion = 12872.771221 eV Total energy + Delta-G solvation = -2665.252468 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.80851 -40.57991 -36.27057 -33.83131 -31.78241 -28.38054 -26.26420 -26.24179 -25.05604 -22.45455 -20.85473 -20.00205 -18.38116 -16.85572 -16.57895 -15.94585 -15.59809 -15.00997 -14.91549 -14.59970 -14.05028 -13.61628 -13.20417 -12.87291 -12.58298 -12.33608 -12.19386 -11.78906 -11.47426 -11.23556 -10.89167 -10.65744 -10.60582 -10.52205 -10.24437 -9.87444 -9.64685 -9.45232 -9.13590 -8.59304 -8.50027 -6.00308 -3.97778 3.32419 3.39497 3.43413 3.84241 4.01652 4.07279 4.17275 4.44019 4.48264 4.53306 5.07910 5.12907 5.30813 5.31930 5.33935 5.41894 5.50986 5.54884 5.65430 5.75237 5.77197 5.83835 6.04679 6.09990 6.18992 6.38524 6.61973 6.72470 6.98903 7.23723 7.40730 7.50123 7.84344 8.59686 9.05706 9.62356 11.13390 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.054016 B = 0.004634 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.238293 B = 6041.240912 C = 6204.781023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.092 4.092 11 C 0.019 3.981 12 N -0.476 5.476 13 C 0.015 3.985 14 C -0.113 4.113 15 C -0.130 4.130 16 C 0.064 3.936 17 F -0.196 7.196 18 C -0.152 4.152 19 C 0.031 3.969 20 H 0.262 0.738 21 H 0.014 0.986 22 H 0.008 0.992 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.439 -11.141 -2.177 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.130 4.130 11 C -0.109 4.109 12 N -0.198 5.198 13 C -0.114 4.114 14 C -0.114 4.114 15 C -0.167 4.167 16 C 0.028 3.972 17 F -0.177 7.177 18 C -0.190 4.190 19 C -0.098 4.098 20 H 0.072 0.928 21 H 0.033 0.967 22 H 0.026 0.974 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.789 -11.341 -1.744 22.875 hybrid contribution 0.738 1.559 -0.617 1.832 sum 20.527 -9.782 -2.362 22.861 Atomic orbital electron populations 1.69925 1.06288 1.26788 1.51444 1.25044 0.94729 0.99140 0.94682 0.86765 0.80339 0.83670 0.78415 1.20374 1.21395 1.19098 1.21162 0.89537 0.94467 1.50388 0.91020 1.19570 0.97200 0.92445 0.95961 1.21344 0.90745 0.99283 1.01636 1.22859 0.99005 0.88610 1.00411 1.68567 1.12810 1.20738 1.17642 1.23737 0.91138 0.97551 0.98944 1.22917 0.95696 0.95736 0.97034 1.23210 1.02269 0.94908 0.96359 1.22417 0.91777 0.97796 0.85197 1.92823 1.71751 1.94986 1.58129 1.23458 0.99006 0.95594 1.00990 1.23710 0.94856 0.99277 0.91909 0.92803 0.96742 0.97370 0.92980 0.92111 0.91442 0.94419 0.89458 0.91260 0.88105 0.89561 0.88818 0.90086 0.88148 0.90878 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.60 13.96 55.43 0.77 -27.82 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.29 9.66 -34.44 -0.33 -15.62 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 10 C -0.09 -1.94 5.46 -26.73 -0.15 -2.08 16 11 C 0.02 0.33 4.80 -3.83 -0.02 0.31 16 12 N -0.48 -7.12 6.16 -243.36 -1.50 -8.62 16 13 C 0.02 0.17 7.72 -3.14 -0.02 0.15 16 14 C -0.11 -1.19 1.24 -154.88 -0.19 -1.38 16 15 C -0.13 -1.17 7.75 -26.33 -0.20 -1.38 16 16 C 0.06 0.56 5.68 -25.74 -0.15 0.41 16 17 F -0.20 -2.32 17.39 2.25 0.04 -2.28 16 18 C -0.15 -1.27 7.75 -26.33 -0.20 -1.47 16 19 C 0.03 0.42 7.73 -3.15 -0.02 0.39 16 20 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 21 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 22 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 23 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.07 1.12 8.08 -51.92 -0.42 0.70 16 26 H 0.04 0.62 7.38 -51.93 -0.38 0.23 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.97 7.48 -51.93 -0.39 0.59 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 288.24 15.07 4.34 4.34 Total: -1.00 -31.91 288.24 -8.27 -40.18 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -5.76 Total: -4.05 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -1.50 Total: -19.29 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.72 Total: -36.44 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.91 -8.27 -40.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.038 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds