Wall clock time and date at job start Mon Mar 30 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48491 * 109.47394 * 270.00101 * 3 2 1 5 5 H 1.48506 * 109.46978 * 30.00425 * 3 2 1 6 6 H 1.48501 * 109.46928 * 149.99703 * 3 2 1 7 7 C 1.37877 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00227 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99515 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46475 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46882 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47279 * 180.02562 * 11 10 9 13 13 C 1.48168 * 110.99973 * 190.00059 * 12 11 10 14 14 C 1.52963 * 85.82896 * 223.07885 * 13 12 11 15 15 C 1.52803 * 121.29252 * 257.65137 * 14 13 12 16 16 C 1.53966 * 86.74358 * 209.10702 * 15 14 13 17 17 F 1.39904 * 113.57632 * 270.03682 * 16 15 14 18 18 C 1.52806 * 121.29145 * 148.65774 * 14 13 12 19 19 C 1.48163 * 111.00038 * 90.36897 * 12 11 10 20 20 H 0.97006 * 120.00217 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46865 * 60.00129 * 9 7 2 22 22 H 1.08996 * 109.46918 * 299.99686 * 9 7 2 23 23 H 1.08999 * 109.47288 * 60.00008 * 10 9 7 24 24 H 1.09000 * 109.47063 * 300.00184 * 10 9 7 25 25 H 1.09008 * 109.47333 * 60.00031 * 11 10 9 26 26 H 1.09006 * 109.47261 * 300.00368 * 11 10 9 27 27 H 1.08998 * 113.81242 * 108.85464 * 13 12 11 28 28 H 1.08997 * 113.81294 * 337.30481 * 13 12 11 29 29 H 1.09000 * 113.66543 * 323.57201 * 15 14 13 30 30 H 1.08999 * 113.66685 * 94.64414 * 15 14 13 31 31 H 1.09000 * 113.57713 * 139.25871 * 16 15 14 32 32 H 1.09003 * 113.66689 * 265.35324 * 18 14 13 33 33 H 1.09001 * 113.66826 * 36.33831 * 18 14 13 34 34 H 1.08994 * 113.81390 * 22.69200 * 19 12 11 35 35 H 1.08996 * 113.81126 * 251.14780 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5515 -2.6365 0.0012 12 7 6.0412 -4.0215 0.0004 13 6 7.5024 -4.0682 0.2418 14 6 7.5402 -5.1153 -0.8726 15 6 7.6644 -6.6054 -0.5576 16 6 8.3749 -6.7437 -1.9165 17 9 7.5038 -7.0075 -2.9791 18 6 8.7560 -5.2576 -1.7871 19 6 6.2277 -4.5180 -1.3830 20 1 -0.4851 0.8401 -0.0004 21 1 3.8745 -0.6807 0.8906 22 1 3.8752 -0.6796 -0.8895 23 1 3.6586 -3.1501 -0.8903 24 1 3.6578 -3.1505 0.8896 25 1 5.9142 -2.1230 0.8917 26 1 5.9156 -2.1223 -0.8883 27 1 7.7742 -4.4590 1.2223 28 1 8.0194 -3.1415 -0.0073 29 1 8.3072 -6.8200 0.2961 30 1 6.7068 -7.1238 -0.5097 31 1 9.2317 -7.4171 -1.8940 32 1 8.6693 -4.7007 -2.7201 33 1 9.7066 -5.0906 -1.2804 34 1 6.3618 -3.7265 -2.1203 35 1 5.4929 -5.2640 -1.6856 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685971841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:51 Heat of formation + Delta-G solvation = -26.613390 kcal Electronic energy + Delta-G solvation = -15538.954776 eV Core-core repulsion = 12872.771221 eV Total energy + Delta-G solvation = -2666.183555 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.59308 -41.51396 -37.33680 -35.66169 -33.77568 -30.01321 -27.23251 -26.93710 -26.57892 -23.79963 -22.06510 -21.67592 -19.19934 -18.89789 -17.52077 -16.84014 -16.62030 -16.34935 -16.12850 -15.80400 -15.49421 -14.93312 -14.78846 -14.11530 -13.90638 -13.58059 -13.26875 -13.13118 -12.88640 -12.78958 -12.22626 -12.04785 -11.79280 -11.67840 -11.46886 -11.43204 -11.29641 -11.23288 -10.78469 -10.76267 -9.69653 -8.31184 -6.36257 1.34277 1.37027 1.49391 2.35223 2.88442 3.03692 3.26847 3.34307 3.45483 3.62205 3.87645 4.02598 4.17589 4.27418 4.42744 4.47870 4.57873 4.66241 4.74527 4.76709 4.83933 4.85686 4.88267 4.93929 5.05435 5.08848 5.22459 5.39301 5.41000 5.50126 5.61162 5.64958 6.11135 6.28024 6.71755 7.28345 8.86174 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.054016 B = 0.004634 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.238293 B = 6041.240912 C = 6204.781023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.244 1.244 7 C -0.537 4.537 8 H 0.025 0.975 9 C -0.009 4.009 10 C -0.084 4.084 11 C 0.032 3.968 12 N -0.499 5.499 13 C 0.021 3.979 14 C -0.112 4.112 15 C -0.128 4.128 16 C 0.058 3.942 17 F -0.220 7.220 18 C -0.140 4.140 19 C 0.021 3.979 20 H 0.267 0.733 21 H 0.023 0.977 22 H 0.019 0.981 23 H 0.036 0.964 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.992 -10.397 -1.890 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.168 1.168 7 C -0.575 4.575 8 H 0.043 0.957 9 C -0.047 4.047 10 C -0.122 4.122 11 C -0.097 4.097 12 N -0.222 5.222 13 C -0.107 4.107 14 C -0.113 4.113 15 C -0.166 4.166 16 C 0.022 3.978 17 F -0.201 7.201 18 C -0.177 4.177 19 C -0.108 4.108 20 H 0.076 0.924 21 H 0.041 0.959 22 H 0.037 0.963 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.147 0.853 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.090 0.910 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 23.359 -10.622 -1.459 25.702 hybrid contribution -0.468 1.217 -0.699 1.479 sum 22.890 -9.405 -2.158 24.841 Atomic orbital electron populations 1.70089 1.08454 1.28282 1.52607 1.26112 0.95701 1.03821 0.93899 0.85555 0.79486 0.77660 0.79305 1.19011 1.20733 1.16769 1.21515 0.92330 0.93008 1.50662 0.95673 1.19500 0.93790 0.94875 0.96513 1.21169 0.94254 0.96708 1.00091 1.22621 0.95474 0.90387 1.01191 1.68500 1.15762 1.19205 1.18684 1.23825 0.88427 0.98413 1.00022 1.22871 0.95067 0.96413 0.96926 1.23298 1.02034 0.93425 0.97812 1.22710 0.92118 0.98973 0.84026 1.92780 1.72763 1.95191 1.59322 1.23480 0.99048 0.94950 1.00270 1.23729 0.96566 0.99198 0.91327 0.92416 0.95914 0.96313 0.94525 0.93781 0.90553 0.93604 0.88115 0.90057 0.85342 0.91561 0.85578 0.90701 0.85080 0.91012 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.83 13.96 21.45 0.30 -61.53 16 2 C 0.00 0.06 5.47 84.65 0.46 0.53 16 3 Si 0.96 45.23 27.47 68.60 1.88 47.11 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.24 -10.61 6.54 99.48 0.65 -9.96 16 7 C -0.54 -32.71 9.66 25.60 0.25 -32.46 16 8 H 0.02 1.69 7.99 -2.91 -0.02 1.67 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.31 16 10 C -0.08 -3.59 5.46 30.59 0.17 -3.42 16 11 C 0.03 1.03 4.80 86.30 0.41 1.45 16 12 N -0.50 -14.42 6.16 -923.87 -5.69 -20.11 16 13 C 0.02 0.43 7.72 86.05 0.66 1.09 16 14 C -0.11 -2.11 1.24 -52.30 -0.06 -2.18 16 15 C -0.13 -2.02 7.75 30.86 0.24 -1.78 16 16 C 0.06 0.84 5.68 31.24 0.18 1.02 16 17 F -0.22 -4.99 17.39 44.97 0.78 -4.21 16 18 C -0.14 -1.86 7.75 30.86 0.24 -1.62 16 19 C 0.02 0.54 7.73 86.05 0.67 1.21 16 20 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 21 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 22 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.08 2.35 8.08 -2.38 -0.02 2.33 16 26 H 0.05 1.42 7.38 -2.38 -0.02 1.40 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.46 7.92 -2.39 -0.02 1.44 16 29 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.13 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.88 7.48 -2.39 -0.02 1.87 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -71.28 288.24 1.60 -69.69 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 0.99 Total: 5.54 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 3.33 Total: -36.48 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -5.39 Total: -81.64 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.78 Total: -4.21 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.11 kcal Total: -71.28 1.60 -69.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.072 kcal (2) G-P(sol) polarization free energy of solvation -71.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds