Wall clock time and date at job start Mon Mar 30 2020 03:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48494 * 109.47196 * 239.99790 * 3 2 1 5 5 H 1.48494 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 120.00287 * 3 2 1 7 7 C 1.37884 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46919 * 179.97438 * 9 7 2 11 11 O 1.42905 * 109.47079 * 179.97438 * 10 9 7 12 12 C 1.42899 * 113.99778 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46889 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47128 * 180.02562 * 13 12 11 15 15 N 1.46905 * 110.01786 * 58.60781 * 14 13 12 16 16 C 1.54265 * 110.03210 * 297.16665 * 14 13 12 17 17 C 1.54889 * 104.19655 * 217.10359 * 16 14 13 18 18 C 1.54897 * 102.74657 * 37.94069 * 17 16 14 19 19 C 1.53870 * 110.03592 * 179.97438 * 14 13 12 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47237 * 60.00043 * 9 7 2 22 22 H 1.09004 * 109.47662 * 299.99884 * 9 7 2 23 23 H 1.09004 * 109.46930 * 60.00101 * 10 9 7 24 24 H 1.09000 * 109.47312 * 300.00045 * 10 9 7 25 25 H 1.08997 * 109.47442 * 300.00036 * 12 11 10 26 26 H 1.08997 * 109.47171 * 60.00232 * 12 11 10 27 27 H 1.09008 * 109.47201 * 299.99764 * 13 12 11 28 28 H 1.08997 * 109.47286 * 59.99983 * 13 12 11 29 29 H 1.00907 * 110.99783 * 300.70429 * 15 14 13 30 30 H 1.00897 * 111.00286 * 64.65407 * 15 14 13 31 31 H 1.09002 * 110.48471 * 335.78515 * 16 14 13 32 32 H 1.08998 * 110.48881 * 98.42439 * 16 14 13 33 33 H 1.08994 * 110.75607 * 279.62626 * 17 16 14 34 34 H 1.09004 * 110.75720 * 156.25673 * 17 16 14 35 35 H 1.08995 * 110.48059 * 203.37592 * 18 17 16 36 36 H 1.08999 * 110.48399 * 80.73440 * 18 17 16 37 37 H 1.09000 * 110.03544 * 238.57059 * 19 14 13 38 38 H 1.09004 * 110.03273 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 8 1.5307 -4.8997 -0.0032 12 6 2.3707 -6.0557 -0.0036 13 6 1.5034 -7.3162 -0.0048 14 6 2.4027 -8.5540 -0.0046 15 7 3.2790 -8.5387 1.1743 16 6 3.2497 -8.5921 -1.2934 17 6 3.3160 -10.0955 -1.6601 18 6 1.8974 -10.5992 -1.2951 19 6 1.5430 -9.8302 -0.0051 20 1 -0.4849 0.8400 0.0004 21 1 0.6247 -2.5563 -0.8920 22 1 0.6240 -2.5576 0.8880 23 1 2.8719 -3.6051 0.8873 24 1 2.8719 -3.6036 -0.8927 25 1 3.0000 -6.0474 -0.8935 26 1 2.9998 -6.0480 0.8864 27 1 0.8738 -7.3249 0.8850 28 1 0.8745 -7.3237 -0.8950 29 1 3.8581 -7.7124 1.1838 30 1 2.7419 -8.6135 2.0252 31 1 2.7616 -8.0269 -2.0874 32 1 4.2494 -8.2010 -1.1046 33 1 4.0724 -10.6055 -1.0636 34 1 3.5100 -10.2253 -2.7248 35 1 1.9105 -11.6729 -1.1077 36 1 1.1910 -10.3582 -2.0895 37 1 1.7769 -10.4383 0.8687 38 1 0.4851 -9.5677 -0.0051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686915071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:46 Heat of formation + Delta-G solvation = -80.054022 kcal Electronic energy + Delta-G solvation = -15724.230202 eV Core-core repulsion = 13179.189593 eV Total energy + Delta-G solvation = -2545.040610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.37863 -37.17110 -33.67131 -33.05279 -30.58679 -29.18248 -28.92365 -26.21178 -24.43491 -22.50794 -20.85981 -20.79605 -19.03237 -16.71038 -16.04434 -15.73031 -15.62717 -15.33265 -14.77261 -14.57720 -13.87579 -13.67036 -13.29957 -13.12915 -12.25178 -11.89464 -11.84182 -11.34331 -11.23067 -11.15363 -11.08573 -10.95496 -10.81533 -10.66535 -10.55692 -10.38636 -10.20371 -9.51380 -9.23105 -8.95679 -8.76284 -8.37316 -6.04423 -4.08410 3.31255 3.35411 3.37611 4.08176 4.36904 4.41637 4.53211 4.58572 4.88501 5.11126 5.21982 5.31407 5.32815 5.39726 5.47991 5.56912 5.58484 5.68778 5.76131 5.82884 5.92868 6.02314 6.04124 6.10755 6.15623 6.25151 6.26262 6.29098 6.86009 7.11180 7.33047 7.52293 7.76778 7.80939 8.09137 8.34283 8.97893 9.55310 11.07227 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.064419 B = 0.003946 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.552954 B = 7094.852164 C = 7174.016576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.069 3.931 11 O -0.392 6.392 12 C 0.061 3.939 13 C -0.145 4.145 14 C 0.118 3.882 15 N -0.838 5.838 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.122 4.122 19 C -0.114 4.114 20 H 0.263 0.737 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.043 0.957 26 H 0.036 0.964 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.341 0.659 30 H 0.340 0.660 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 -19.226 -0.903 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.312 6.312 12 C -0.017 4.017 13 C -0.184 4.184 14 C 0.025 3.975 15 N -0.368 5.368 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.152 4.152 20 H 0.072 0.928 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.185 -19.778 -1.199 20.481 hybrid contribution 0.207 1.938 0.318 1.975 sum 5.392 -17.839 -0.882 18.657 Atomic orbital electron populations 1.69972 1.06093 1.26911 1.50007 1.25001 0.94889 0.99314 0.95068 0.86573 0.79511 0.82752 0.78667 1.20139 1.21148 1.20154 1.21019 0.92972 0.90583 1.51823 0.92598 1.19065 0.94239 0.89468 0.98404 1.22881 0.96379 0.83263 0.98136 1.87925 1.34130 1.13912 1.95250 1.22359 0.93376 0.86741 0.99197 1.22389 0.98968 0.93462 1.03587 1.21421 0.91456 0.93275 0.91331 1.59117 1.26331 1.47001 1.04400 1.22453 0.99929 0.96886 0.95936 1.22424 0.97050 0.95715 1.00416 1.22322 0.97065 0.99368 0.97228 1.22233 0.98878 0.95349 0.98694 0.92764 0.95769 0.95798 0.94803 0.94721 0.93858 0.94586 0.91359 0.90629 0.84533 0.84769 0.91125 0.91281 0.91232 0.91988 0.91863 0.91755 0.90964 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 10 C 0.07 1.55 5.88 37.16 0.22 1.77 16 11 O -0.39 -8.17 10.34 -35.23 -0.36 -8.53 16 12 C 0.06 0.93 5.38 37.16 0.20 1.13 16 13 C -0.14 -1.87 4.45 -26.73 -0.12 -1.99 16 14 C 0.12 1.25 0.88 -130.48 -0.11 1.13 16 15 N -0.84 -8.44 8.68 1.64 0.01 -8.42 16 16 C -0.11 -1.19 5.02 -25.07 -0.13 -1.31 16 17 C -0.12 -1.08 6.91 -24.73 -0.17 -1.25 16 18 C -0.12 -1.07 6.83 -25.04 -0.17 -1.24 16 19 C -0.11 -1.08 6.21 -25.59 -0.16 -1.24 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.64 7.27 -51.93 -0.38 0.26 16 26 H 0.04 0.51 6.67 -51.93 -0.35 0.17 16 27 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 29 H 0.34 3.45 7.15 -39.29 -0.28 3.17 16 30 H 0.34 3.13 9.00 -39.29 -0.35 2.78 16 31 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 32 H 0.07 0.73 8.02 -51.93 -0.42 0.31 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 38 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 LS Contribution 303.54 15.07 4.57 4.57 Total: -1.00 -30.70 303.54 -7.82 -38.51 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.75 Total: -0.05 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -1.00 Total: -16.33 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.75 Total: -34.86 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.36 Total: -8.53 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.70 -7.82 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686915071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.542 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds