Wall clock time and date at job start Mon Mar 30 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47510 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47309 * 119.99914 * 8 6 4 11 11 H 1.48498 * 109.47163 * 239.99790 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.46505 * 120.00155 * 59.99832 * 12 2 1 14 14 C 1.37482 * 120.00206 * 240.00456 * 12 2 1 15 15 N 1.29267 * 118.84705 * 359.72133 * 14 12 2 16 16 C 1.45851 * 123.74052 * 178.80268 * 15 14 12 17 17 C 1.53030 * 110.52780 * 21.23849 * 16 15 14 18 18 H 1.09001 * 109.63807 * 70.07772 * 17 16 15 19 19 O 1.42898 * 109.81528 * 190.60854 * 17 16 15 20 20 C 1.53617 * 108.43983 * 310.39616 * 17 16 15 21 21 N 1.37478 * 118.85276 * 179.97438 * 14 12 2 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 27 27 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 28 28 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 29 29 H 1.09003 * 109.44134 * 260.86926 * 16 15 14 30 30 H 1.09004 * 109.09456 * 141.38366 * 16 15 14 31 31 H 0.96703 * 113.99767 * 299.05174 * 19 17 16 32 32 H 1.09004 * 109.87191 * 299.93758 * 20 17 16 33 33 H 1.09003 * 109.92948 * 178.91005 * 20 17 16 34 34 H 0.97001 * 120.64005 * 12.89503 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.8087 -0.0225 2.1012 15 7 3.1117 1.2131 1.8719 16 6 3.9202 2.0292 2.7706 17 6 4.7652 1.1417 3.6872 18 1 5.5465 0.6528 3.1051 19 8 5.3586 1.9350 4.7170 20 6 3.8492 0.0807 4.3157 21 7 3.2534 -0.6932 3.2158 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7083 1.1609 -3.4845 26 1 2.4157 -2.7377 0.9717 27 1 1.6237 -2.2852 2.5002 28 1 0.6904 -2.3002 0.9847 29 1 3.2670 2.6550 3.3787 30 1 4.5788 2.6653 2.1792 31 1 5.9503 2.6261 4.3894 32 1 3.0636 0.5658 4.8951 33 1 4.4314 -0.5783 4.9599 34 1 3.1764 -1.6583 3.2755 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691950903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:41 Heat of formation + Delta-G solvation = -2.955959 kcal Electronic energy + Delta-G solvation = -16384.828706 eV Core-core repulsion = 13739.590976 eV Total energy + Delta-G solvation = -2645.237730 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.23919 -37.02916 -35.12422 -32.71176 -32.22568 -29.87220 -28.57357 -26.00655 -25.07660 -24.23166 -22.19396 -20.18180 -18.20976 -17.60062 -16.94443 -16.26443 -15.51945 -14.56443 -14.26335 -14.22429 -13.86440 -13.53632 -13.02832 -12.85535 -12.47900 -12.08542 -11.43834 -11.41521 -11.36412 -10.98333 -10.87870 -10.71193 -10.42684 -10.21570 -10.02593 -9.88578 -9.00107 -8.41508 -8.07463 -7.90469 -6.73402 -5.95113 -4.02078 3.30807 3.33669 3.39392 3.43394 3.65218 4.26003 4.46427 4.49267 4.97799 5.11700 5.29310 5.34802 5.62462 5.66043 5.81291 6.05911 6.13627 6.30071 6.34382 6.39979 6.86048 6.91473 7.03495 7.18655 7.34814 7.60027 7.75045 7.92522 8.11926 8.27121 8.39602 8.82996 9.01655 9.46845 9.64550 11.08978 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.036423 B = 0.007222 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.556663 B = 3876.002503 C = 4070.841269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.278 3.722 3 H 0.077 0.923 4 C -0.519 4.519 5 H 0.055 0.945 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.595 5.595 13 C 0.101 3.899 14 C 0.634 3.366 15 N -0.666 5.666 16 C 0.067 3.933 17 C 0.055 3.945 18 H 0.059 0.941 19 O -0.571 6.571 20 C 0.143 3.857 21 N -0.778 5.778 22 H 0.092 0.908 23 H 0.025 0.975 24 H 0.010 0.990 25 H 0.260 0.740 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.380 0.620 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 -2.656 11.093 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.178 3.822 3 H 0.095 0.905 4 C -0.558 4.558 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.316 5.316 13 C -0.043 4.043 14 C 0.273 3.727 15 N -0.411 5.411 16 C -0.064 4.064 17 C -0.007 4.007 18 H 0.077 0.923 19 O -0.375 6.375 20 C 0.017 3.983 21 N -0.428 5.428 22 H 0.110 0.890 23 H 0.044 0.956 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.898 -2.210 10.759 11.655 hybrid contribution 0.991 -0.941 -0.527 1.464 sum 4.889 -3.151 10.232 11.770 Atomic orbital electron populations 1.22127 0.98984 0.98905 1.00610 1.18873 0.89954 0.94746 0.78634 0.90501 1.21459 1.31097 1.12656 0.90620 0.92626 1.24862 0.95185 0.95050 0.98751 1.69895 1.36798 1.22779 1.23325 0.86512 0.78531 0.79575 0.83138 1.20025 1.21089 1.21062 1.46606 1.51162 1.10264 1.23528 1.21345 1.01311 0.83252 0.98435 1.18676 0.86144 0.87023 0.80871 1.71238 1.32440 1.05415 1.31968 1.22110 0.95242 0.96100 0.92994 1.22856 0.95159 0.93315 0.89330 0.92344 1.86379 1.65635 1.50197 1.35261 1.21172 0.95438 0.93198 0.88460 1.45352 1.69595 1.09275 1.18541 0.88986 0.95610 0.97085 0.92960 0.94139 0.93901 0.90813 0.92700 0.91400 0.77247 0.92017 0.90159 0.76982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.95 37.16 0.33 -3.26 16 2 C 0.28 7.13 2.64 -69.08 -0.18 6.95 16 3 H 0.08 2.25 6.75 -51.93 -0.35 1.90 16 4 C -0.52 -14.20 8.37 -34.44 -0.29 -14.49 16 5 H 0.06 1.52 7.65 -52.49 -0.40 1.12 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.60 -12.84 2.83 -177.30 -0.50 -13.34 16 13 C 0.10 1.75 9.37 59.85 0.56 2.31 16 14 C 0.63 12.98 8.09 -321.41 -2.60 10.38 16 15 N -0.67 -14.67 9.01 -62.45 -0.56 -15.23 16 16 C 0.07 1.18 6.84 -4.38 -0.03 1.15 16 17 C 0.05 0.81 3.76 -26.40 -0.10 0.71 16 18 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 19 O -0.57 -7.26 13.34 -35.23 -0.47 -7.73 16 20 C 0.14 2.00 6.87 -3.39 -0.02 1.98 16 21 N -0.78 -12.26 5.49 -61.30 -0.34 -12.60 16 22 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 23 H 0.02 0.58 6.66 -51.93 -0.35 0.23 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.59 6.56 -51.93 -0.34 0.25 16 28 H 0.07 1.30 6.43 -51.93 -0.33 0.96 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.38 3.29 9.09 45.56 0.41 3.70 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.39 5.29 6.89 -40.82 -0.28 5.01 16 LS Contribution 274.44 15.07 4.14 4.14 Total: -1.00 -31.25 274.44 -8.60 -39.85 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.05 Total: 6.00 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -2.42 Total: 7.37 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -0.77 Total: -65.95 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.47 Total: -7.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.25 -8.60 -39.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691950903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.891 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds