Wall clock time and date at job start Mon Mar 30 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47510 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47309 * 119.99914 * 8 6 4 11 11 H 1.48498 * 109.47163 * 239.99790 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.46505 * 120.00155 * 59.99832 * 12 2 1 14 14 C 1.37482 * 120.00206 * 240.00456 * 12 2 1 15 15 N 1.29267 * 118.84705 * 359.72133 * 14 12 2 16 16 C 1.45851 * 123.74052 * 178.80268 * 15 14 12 17 17 C 1.53030 * 110.52780 * 21.23849 * 16 15 14 18 18 H 1.09001 * 109.63807 * 70.07772 * 17 16 15 19 19 O 1.42898 * 109.81528 * 190.60854 * 17 16 15 20 20 C 1.53617 * 108.43983 * 310.39616 * 17 16 15 21 21 N 1.37478 * 118.85276 * 179.97438 * 14 12 2 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 27 27 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 28 28 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 29 29 H 1.09003 * 109.44134 * 260.86926 * 16 15 14 30 30 H 1.09004 * 109.09456 * 141.38366 * 16 15 14 31 31 H 0.96703 * 113.99767 * 299.05174 * 19 17 16 32 32 H 1.09004 * 109.87191 * 299.93758 * 20 17 16 33 33 H 1.09003 * 109.92948 * 178.91005 * 20 17 16 34 34 H 0.97001 * 120.64005 * 12.89503 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.8087 -0.0225 2.1012 15 7 3.1117 1.2131 1.8719 16 6 3.9202 2.0292 2.7706 17 6 4.7652 1.1417 3.6872 18 1 5.5465 0.6528 3.1051 19 8 5.3586 1.9350 4.7170 20 6 3.8492 0.0807 4.3157 21 7 3.2534 -0.6932 3.2158 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7083 1.1609 -3.4845 26 1 2.4157 -2.7377 0.9717 27 1 1.6237 -2.2852 2.5002 28 1 0.6904 -2.3002 0.9847 29 1 3.2670 2.6550 3.3787 30 1 4.5788 2.6653 2.1792 31 1 5.9503 2.6261 4.3894 32 1 3.0636 0.5658 4.8951 33 1 4.4314 -0.5783 4.9599 34 1 3.1764 -1.6583 3.2755 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691950903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:41 Heat of formation + Delta-G solvation = -25.742740 kcal Electronic energy + Delta-G solvation = -16385.816815 eV Core-core repulsion = 13739.590976 eV Total energy + Delta-G solvation = -2646.225839 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.61519 -38.40445 -36.59020 -34.57773 -33.66015 -31.53372 -30.11247 -27.45770 -27.14450 -25.60465 -23.69362 -21.84559 -19.59753 -18.90139 -18.36714 -18.13887 -17.16490 -16.34967 -15.60841 -15.46247 -15.30209 -15.10939 -14.55316 -14.22661 -14.19186 -13.36441 -13.32727 -12.97531 -12.87385 -12.69100 -12.51745 -12.40527 -12.18087 -12.01414 -11.91747 -11.21701 -10.96797 -10.45901 -9.55839 -9.34936 -8.39694 -8.00665 -6.18701 1.42666 1.44467 1.55065 1.98246 2.13690 2.47339 2.95646 3.22904 3.33509 3.80607 3.94245 4.07972 4.30579 4.56431 4.62775 4.71044 4.74035 4.85873 4.94752 5.02157 5.07242 5.10323 5.24719 5.57959 5.61933 5.72456 6.00546 6.26809 6.42529 6.49729 6.75118 6.93537 7.30242 7.50128 8.00360 8.99167 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.036423 B = 0.007222 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.556663 B = 3876.002503 C = 4070.841269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.286 3.714 3 H 0.033 0.967 4 C -0.530 4.530 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.286 1.286 12 N -0.608 5.608 13 C 0.100 3.900 14 C 0.628 3.372 15 N -0.718 5.718 16 C 0.064 3.936 17 C 0.069 3.931 18 H 0.054 0.946 19 O -0.569 6.569 20 C 0.141 3.859 21 N -0.763 5.763 22 H 0.065 0.935 23 H 0.039 0.961 24 H 0.016 0.984 25 H 0.262 0.738 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.398 0.602 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 -4.175 12.229 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.184 3.816 3 H 0.051 0.949 4 C -0.569 4.569 5 H 0.070 0.930 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.202 1.202 11 H -0.212 1.212 12 N -0.329 5.329 13 C -0.043 4.043 14 C 0.266 3.734 15 N -0.465 5.465 16 C -0.067 4.067 17 C 0.007 3.993 18 H 0.072 0.928 19 O -0.376 6.376 20 C 0.016 3.984 21 N -0.414 5.414 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.035 0.965 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.248 0.752 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.770 -3.751 11.943 13.396 hybrid contribution 0.764 -0.391 -0.811 1.181 sum 5.534 -4.142 11.132 13.104 Atomic orbital electron populations 1.21911 0.98385 0.99360 0.99519 1.18388 0.90297 0.92872 0.80075 0.94898 1.21697 1.31009 1.12544 0.91654 0.92969 1.25642 0.95389 0.95723 1.01658 1.70031 1.37736 1.24014 1.23962 0.85511 0.78114 0.78460 0.79486 1.19358 1.20229 1.21234 1.46476 1.51852 1.11729 1.22870 1.21514 1.00972 0.80875 1.00962 1.18623 0.85963 0.87060 0.81772 1.71125 1.33908 1.06930 1.34497 1.22120 0.95288 0.96120 0.93171 1.22545 0.94650 0.92967 0.89170 0.92765 1.86353 1.65965 1.50740 1.34502 1.21364 0.95533 0.93579 0.87897 1.45194 1.68777 1.09947 1.17465 0.91628 0.94240 0.96506 0.92920 0.93779 0.90105 0.91374 0.93098 0.91609 0.75158 0.92172 0.86673 0.75374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 8.95 71.98 0.64 -5.92 16 2 C 0.29 14.92 2.64 44.25 0.12 15.04 16 3 H 0.03 2.01 6.75 -2.39 -0.02 2.00 16 4 C -0.53 -29.21 8.37 25.60 0.21 -29.00 16 5 H 0.05 2.84 7.65 -2.91 -0.02 2.82 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -53.45 11.32 21.45 0.24 -53.21 16 8 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 N -0.61 -25.95 2.83 -714.84 -2.02 -27.97 16 13 C 0.10 3.27 9.37 127.77 1.20 4.46 16 14 C 0.63 25.26 8.09 261.00 2.11 27.37 16 15 N -0.72 -32.04 9.01 -351.49 -3.17 -35.21 16 16 C 0.06 2.25 6.84 86.51 0.59 2.84 16 17 C 0.07 1.88 3.76 30.81 0.12 2.00 16 18 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 19 O -0.57 -13.01 13.34 -148.98 -1.99 -15.00 16 20 C 0.14 3.53 6.87 86.47 0.59 4.13 16 21 N -0.76 -22.22 5.49 -347.86 -1.91 -24.13 16 22 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 23 H 0.04 1.78 6.66 -2.39 -0.02 1.76 16 24 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.99 6.56 -2.39 -0.02 1.97 16 28 H 0.07 2.29 6.43 -2.39 -0.02 2.27 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.40 5.95 9.09 -74.06 -0.67 5.27 16 32 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.41 9.59 6.89 -92.71 -0.64 8.95 16 Total: -1.00 -68.00 274.44 -0.98 -68.98 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -0.20 Total: 18.46 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 6.03 Total: 22.20 kcal Atomic # 7 Polarization: -133.66 SS G_CDS: -6.85 Total: -140.52 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.99 Total: -15.00 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.00 -0.98 -68.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691950903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.240 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds