Wall clock time and date at job start Mon Mar 30 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99893 * 2 1 4 4 H 1.09004 * 109.47084 * 4.20690 * 3 2 1 5 5 C 1.52993 * 109.47411 * 124.21280 * 3 2 1 6 6 N 1.46502 * 109.46832 * 299.99626 * 5 3 2 7 7 C 1.46502 * 120.00245 * 90.00255 * 6 5 3 8 8 C 1.34776 * 120.00153 * 269.99794 * 6 5 3 9 9 O 1.21693 * 120.00111 * 0.02562 * 8 6 5 10 10 C 1.46379 * 120.00357 * 180.02562 * 8 6 5 11 11 H 1.08001 * 119.99356 * 355.89030 * 10 8 6 12 12 C 1.40042 * 120.00009 * 175.89048 * 10 8 6 13 13 N 1.30669 * 120.00536 * 6.96937 * 12 10 8 14 14 Si 1.86809 * 119.99590 * 186.97102 * 12 10 8 15 15 H 1.48495 * 109.47146 * 94.96317 * 14 12 10 16 16 H 1.48503 * 109.46819 * 214.95958 * 14 12 10 17 17 H 1.48498 * 109.47013 * 334.95966 * 14 12 10 18 18 C 1.52999 * 109.46861 * 244.21498 * 3 2 1 19 19 C 1.52993 * 117.50482 * 128.35245 * 18 3 2 20 20 C 1.53005 * 117.50234 * 59.68644 * 18 3 2 21 21 H 1.09008 * 109.47355 * 182.79194 * 1 2 3 22 22 H 1.08998 * 109.47330 * 62.79209 * 1 2 3 23 23 H 1.08999 * 109.47459 * 302.78971 * 1 2 3 24 24 H 1.08995 * 109.47306 * 59.99412 * 5 3 2 25 25 H 1.09004 * 109.47089 * 180.02562 * 5 3 2 26 26 H 1.08995 * 109.46878 * 89.99391 * 7 6 5 27 27 H 1.08997 * 109.47587 * 209.99898 * 7 6 5 28 28 H 1.09001 * 109.46859 * 330.00218 * 7 6 5 29 29 H 0.97004 * 120.00126 * 179.97438 * 13 12 10 30 30 H 1.09005 * 115.54592 * 274.01963 * 18 3 2 31 31 H 1.09003 * 117.49720 * 359.97438 * 19 18 3 32 32 H 1.08995 * 117.50570 * 145.02071 * 19 18 3 33 33 H 1.08999 * 117.50047 * 214.98068 * 20 18 3 34 34 H 1.08999 * 117.49707 * 359.97438 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2217 2.0542 0.0754 5 6 2.9586 1.4416 1.1928 6 7 2.2110 1.2399 2.4365 7 6 2.0832 -0.1044 3.0047 8 6 1.6408 2.2911 3.0580 9 8 1.7465 3.4078 2.5859 10 6 0.8943 2.0898 4.3009 11 1 0.7438 1.0916 4.6847 12 6 0.3753 3.1915 4.9923 13 7 0.4375 4.3842 4.4621 14 14 -0.4061 2.9561 6.6727 15 1 0.6042 3.2168 7.7293 16 1 -1.5403 3.9020 6.8281 17 1 -0.9033 1.5623 6.7964 18 6 2.7909 1.5161 -1.2989 19 6 2.4873 2.7780 -2.1089 20 6 2.0157 1.4120 -2.6139 21 1 -0.3634 -1.0265 0.0501 22 1 -0.3634 0.4699 -0.9139 23 1 -0.3634 0.5565 0.8639 24 1 3.7470 0.6928 1.1174 25 1 3.4015 2.4375 1.1930 26 1 2.9126 -0.2907 3.6869 27 1 1.1414 -0.1812 3.5480 28 1 2.1007 -0.8413 2.2017 29 1 0.0777 5.1472 4.9409 30 1 3.8204 1.1581 -1.2919 31 1 1.7311 3.4580 -1.7167 32 1 3.3169 3.2500 -2.6352 33 1 2.5353 0.9860 -3.4721 34 1 0.9496 1.1931 -2.5537 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692101232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:08 Heat of formation + Delta-G solvation = -78.163696 kcal Electronic energy + Delta-G solvation = -16436.202723 eV Core-core repulsion = 13755.410990 eV Total energy + Delta-G solvation = -2680.791733 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36159 -38.98727 -37.01772 -35.66374 -34.59230 -31.41592 -28.40636 -27.48556 -26.61279 -24.50598 -23.25860 -21.55203 -21.03296 -18.47485 -17.82870 -17.37512 -16.99769 -16.53692 -15.99387 -15.78593 -15.43077 -14.92854 -14.50696 -14.17781 -13.40791 -13.25205 -13.12495 -13.05565 -13.01462 -12.74954 -12.44046 -12.36013 -12.24430 -12.01177 -11.91244 -11.30698 -11.11217 -10.93676 -10.61057 -9.77591 -8.99581 -8.30138 -6.83407 1.38768 1.39949 1.55539 2.23382 2.44859 2.56972 2.87680 3.14997 3.59742 3.82875 3.93915 4.05524 4.11106 4.33554 4.45636 4.51429 4.60781 4.65343 4.65572 4.73745 4.81433 4.92950 5.00034 5.02948 5.06170 5.21643 5.22989 5.37967 5.75484 6.14083 6.24664 6.43403 6.87927 7.43119 8.47367 8.67209 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.037693 B = 0.007448 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.659463 B = 3758.315810 C = 4012.971036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.380 6.380 3 C 0.116 3.884 4 H 0.027 0.973 5 C 0.124 3.876 6 N -0.645 5.645 7 C 0.106 3.894 8 C 0.538 3.462 9 O -0.631 6.631 10 C -0.570 4.570 11 H 0.091 0.909 12 C 0.030 3.970 13 N -0.821 5.821 14 Si 0.994 3.006 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.247 1.247 18 C -0.173 4.173 19 C -0.179 4.179 20 C -0.153 4.153 21 H 0.108 0.892 22 H 0.043 0.957 23 H 0.014 0.986 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.273 0.727 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -9.292 -7.969 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.299 6.299 3 C 0.057 3.943 4 H 0.045 0.955 5 C 0.000 4.000 6 N -0.381 5.381 7 C -0.037 4.037 8 C 0.344 3.656 9 O -0.519 6.519 10 C -0.606 4.606 11 H 0.108 0.892 12 C -0.185 4.185 13 N -0.451 5.451 14 Si 0.813 3.187 15 H -0.189 1.189 16 H -0.198 1.198 17 H -0.170 1.170 18 C -0.192 4.192 19 C -0.216 4.216 20 C -0.190 4.190 21 H 0.127 0.873 22 H 0.061 0.939 23 H 0.033 0.967 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.435 -8.707 -8.215 12.057 hybrid contribution -0.563 0.630 0.765 1.140 sum 0.872 -8.078 -7.450 11.023 Atomic orbital electron populations 1.22826 0.80824 1.03338 0.98969 1.87763 1.19965 1.27187 1.94940 1.21965 0.94623 0.84149 0.93602 0.95459 1.21377 0.93953 1.01062 0.83627 1.47752 1.56970 1.08385 1.24980 1.21515 1.00956 0.82988 0.98264 1.18645 0.79157 0.82623 0.85126 1.90538 1.66213 1.25809 1.69329 1.21528 1.36243 0.95200 1.07679 0.89153 1.26975 0.94323 0.93907 1.03341 1.70196 1.35820 1.00742 1.38305 0.85067 0.77927 0.79758 0.75936 1.18872 1.19767 1.17018 1.22562 1.01075 1.03963 0.91601 1.23055 1.03972 0.90951 1.03661 1.22893 1.00233 0.99131 0.96700 0.87323 0.93875 0.96722 0.89272 0.92623 0.94050 0.92260 0.90537 0.91671 0.85912 0.90865 0.86517 0.86260 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 10.70 113.37 1.21 2.35 16 2 O -0.38 -12.93 8.87 -148.98 -1.32 -14.25 16 3 C 0.12 4.29 2.71 30.59 0.08 4.38 16 4 H 0.03 1.22 7.36 -2.39 -0.02 1.21 16 5 C 0.12 5.08 5.11 86.38 0.44 5.52 16 6 N -0.65 -30.41 2.80 -851.89 -2.38 -32.80 16 7 C 0.11 4.02 9.91 127.77 1.27 5.29 16 8 C 0.54 31.82 7.61 86.36 0.66 32.48 16 9 O -0.63 -42.75 14.62 -4.32 -0.06 -42.82 16 10 C -0.57 -32.66 8.76 24.83 0.22 -32.45 16 11 H 0.09 4.67 5.96 -2.91 -0.02 4.65 16 12 C 0.03 1.67 5.49 85.30 0.47 2.14 16 13 N -0.82 -50.72 11.86 21.83 0.26 -50.46 16 14 Si 0.99 41.27 29.56 68.60 2.03 43.30 16 15 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 18 C -0.17 -5.03 5.39 -10.79 -0.06 -5.09 16 19 C -0.18 -4.85 10.18 30.62 0.31 -4.54 16 20 C -0.15 -3.67 10.15 30.62 0.31 -3.35 16 21 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 22 H 0.04 1.20 7.47 -2.39 -0.02 1.18 16 23 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.09 3.06 8.07 -2.39 -0.02 3.04 16 25 H 0.06 2.56 7.42 -2.39 -0.02 2.55 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 2.32 6.05 -2.39 -0.01 2.31 16 28 H 0.08 2.51 7.06 -2.39 -0.02 2.50 16 29 H 0.27 15.29 8.29 -92.70 -0.77 14.52 16 30 H 0.12 3.14 8.11 -2.38 -0.02 3.12 16 31 H 0.07 2.31 8.05 -2.39 -0.02 2.29 16 32 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.12 7.47 -2.39 -0.02 2.10 16 Total: -1.00 -74.83 287.07 4.51 -70.32 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 1.08 Total: 20.00 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 4.91 Total: 6.71 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.12 Total: -83.26 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -1.38 Total: -57.06 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -74.83 4.51 -70.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692101232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.848 kcal (2) G-P(sol) polarization free energy of solvation -74.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds