Wall clock time and date at job start Mon Mar 30 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99899 * 2 1 4 4 H 1.48503 * 109.47204 * 270.00331 * 3 2 1 5 5 H 1.48503 * 109.47631 * 30.00150 * 3 2 1 6 6 H 1.48502 * 109.47301 * 150.00206 * 3 2 1 7 7 C 1.37872 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00501 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99474 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47286 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47675 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47348 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47193 * 179.97438 * 12 11 10 14 14 C 1.47054 * 125.40478 * 89.99999 * 13 12 11 15 15 C 1.54106 * 103.86027 * 180.02562 * 14 13 12 16 16 N 1.47050 * 103.86171 * 0.02562 * 15 14 13 17 17 N 1.36607 * 125.40841 * 179.97438 * 16 15 14 18 18 C 1.33941 * 125.41286 * 270.00645 * 13 12 11 19 19 O 1.21586 * 123.04496 * 359.97278 * 18 13 12 20 20 H 0.97002 * 119.99776 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47496 * 60.00238 * 9 7 2 22 22 H 1.09001 * 109.47575 * 299.99789 * 9 7 2 23 23 H 1.09008 * 109.46976 * 59.99641 * 10 9 7 24 24 H 1.09001 * 109.46765 * 300.00437 * 10 9 7 25 25 H 1.09008 * 109.47198 * 59.99793 * 11 10 9 26 26 H 1.09005 * 109.47300 * 300.00549 * 11 10 9 27 27 H 1.09003 * 109.46744 * 60.00520 * 12 11 10 28 28 H 1.08994 * 109.47336 * 300.00112 * 12 11 10 29 29 H 1.08998 * 110.54947 * 61.40865 * 14 13 12 30 30 H 1.09000 * 110.67902 * 298.65626 * 14 13 12 31 31 H 1.09003 * 110.54643 * 118.59795 * 15 14 13 32 32 H 1.08999 * 110.55024 * 241.40492 * 15 14 13 33 33 H 1.00905 * 110.99378 * 179.97438 * 17 16 15 34 34 H 1.00894 * 111.00161 * 303.95264 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 6 6.0615 -4.0791 -0.0015 13 7 7.5266 -4.0791 -0.0033 14 6 8.3800 -4.0779 1.1943 15 6 9.8127 -4.0778 0.6266 16 7 9.6143 -4.0783 -0.8304 17 7 10.6108 -4.0779 -1.7649 18 6 8.3014 -4.0800 -1.0958 19 8 7.8535 -4.0815 -2.2262 20 1 -0.4850 0.8401 0.0004 21 1 3.8753 -0.6804 0.8889 22 1 3.8746 -0.6800 -0.8911 23 1 3.6579 -3.1506 -0.8908 24 1 3.6586 -3.1501 0.8892 25 1 5.9156 -2.1223 0.8873 26 1 5.9142 -2.1230 -0.8927 27 1 5.6975 -4.5936 -0.8908 28 1 5.6990 -4.5922 0.8892 29 1 8.2043 -4.9735 1.7902 30 1 8.2051 -3.1825 1.7907 31 1 10.3480 -3.1812 0.9393 32 1 10.3487 -4.9735 0.9404 33 1 10.2300 -4.0788 -2.6994 34 1 11.2339 -3.2961 -1.6287 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692379175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:09 Heat of formation + Delta-G solvation = -26.499494 kcal Electronic energy + Delta-G solvation = -15567.139365 eV Core-core repulsion = 12920.880710 eV Total energy + Delta-G solvation = -2646.258654 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.16552 -37.64085 -37.53887 -36.13271 -34.47341 -32.36538 -30.01113 -29.09042 -26.71044 -24.10340 -23.32626 -21.82108 -21.18643 -18.89297 -18.68637 -17.84477 -17.62905 -16.61876 -16.39131 -16.08226 -15.40150 -14.91068 -14.81721 -14.74739 -14.26791 -14.04435 -13.74001 -13.19253 -13.14427 -12.85839 -12.47963 -12.09901 -11.94916 -11.77901 -11.56556 -11.44177 -11.30126 -11.27623 -10.77609 -9.91428 -8.91007 -8.30515 -6.34434 1.17191 1.34246 1.35268 1.47640 1.94083 2.34958 2.59322 3.04764 3.47422 3.83364 4.00675 4.11811 4.21069 4.28253 4.38229 4.58319 4.61705 4.73100 4.80824 4.83495 4.95650 5.10691 5.11555 5.18387 5.53223 5.61396 5.63424 5.67153 5.96341 6.28339 6.44988 6.52603 6.73771 7.30342 7.57619 8.86451 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.046119 B = 0.004765 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.975850 B = 5874.795685 C = 5968.647842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.033 0.967 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.121 4.121 12 C 0.156 3.844 13 N -0.629 5.629 14 C 0.088 3.912 15 C 0.110 3.890 16 N -0.491 5.491 17 N -0.570 5.570 18 C 0.667 3.333 19 O -0.642 6.642 20 H 0.266 0.734 21 H 0.024 0.976 22 H 0.007 0.993 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.363 0.637 34 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.530 -7.092 5.662 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.050 4.050 10 C -0.132 4.132 11 C -0.160 4.160 12 C 0.034 3.966 13 N -0.366 5.366 14 C -0.035 4.035 15 C -0.012 4.012 16 N -0.317 5.317 17 N -0.196 5.196 18 C 0.367 3.633 19 O -0.525 6.525 20 H 0.075 0.925 21 H 0.043 0.957 22 H 0.025 0.975 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.179 0.821 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 24.352 -7.699 5.360 26.097 hybrid contribution -0.708 1.733 -0.868 2.063 sum 23.644 -5.966 4.492 24.795 Atomic orbital electron populations 1.70077 1.08280 1.28157 1.52782 1.26043 0.95641 1.03577 0.94148 0.85638 0.79590 0.78286 0.78993 1.19749 1.20585 1.16855 1.21557 0.92266 0.93183 1.50207 0.94852 1.19542 0.93795 0.95482 0.96186 1.21255 0.93699 0.97074 1.01132 1.21886 0.95332 0.97220 1.01583 1.21298 0.74954 0.96567 1.03800 1.47213 1.06125 1.76867 1.06369 1.22805 0.86869 1.05878 0.87949 1.22690 0.97454 1.05788 0.75241 1.46015 1.01305 1.77675 1.06732 1.60453 1.07544 1.48860 1.02784 1.16481 0.82798 0.78997 0.85052 1.90897 1.76912 1.61304 1.23346 0.92485 0.95736 0.97479 0.93959 0.91591 0.90542 0.94467 0.91992 0.86830 0.87026 0.87869 0.87621 0.87342 0.82147 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 2 C 0.00 0.14 5.47 84.65 0.46 0.61 16 3 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.09 16 7 C -0.53 -31.69 9.66 25.60 0.25 -31.44 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 9 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 10 C -0.09 -3.64 5.15 30.59 0.16 -3.48 16 11 C -0.12 -3.78 5.54 30.59 0.17 -3.61 16 12 C 0.16 4.03 6.00 86.38 0.52 4.55 16 13 N -0.63 -14.78 2.96 -838.37 -2.48 -17.26 16 14 C 0.09 1.05 7.68 86.65 0.67 1.71 16 15 C 0.11 1.18 7.90 86.65 0.68 1.86 16 16 N -0.49 -10.21 3.96 -477.34 -1.89 -12.10 16 17 N -0.57 -10.16 10.58 37.02 0.39 -9.77 16 18 C 0.67 19.61 8.39 179.57 1.51 21.11 16 19 O -0.64 -25.43 16.78 -3.99 -0.07 -25.49 16 20 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 21 H 0.02 1.12 7.20 -2.39 -0.02 1.11 16 22 H 0.01 0.33 7.57 -2.39 -0.02 0.32 16 23 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 24 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.06 1.89 7.91 -2.39 -0.02 1.87 16 28 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.36 7.54 8.30 -210.54 -1.75 5.79 16 34 H 0.35 4.12 9.21 -210.56 -1.94 2.18 16 Total: -1.00 -80.31 286.06 0.03 -80.28 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -2.64 Total: 6.94 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 4.53 Total: -9.17 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -3.68 Total: -99.79 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.07 Total: -25.49 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -80.31 0.03 -80.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692379175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.782 kcal (2) G-P(sol) polarization free energy of solvation -80.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds