Wall clock time and date at job start Mon Mar 30 2020 03:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99724 * 2 1 4 4 H 1.48500 * 109.47069 * 269.99377 * 3 2 1 5 5 H 1.48499 * 109.47435 * 29.99452 * 3 2 1 6 6 H 1.48506 * 109.47268 * 149.99722 * 3 2 1 7 7 C 1.37874 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99783 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47017 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.47162 * 180.02562 * 10 9 7 12 12 C 1.42902 * 114.00415 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47396 * 180.02562 * 12 11 10 14 14 H 1.09002 * 108.81798 * 55.00266 * 13 12 11 15 15 C 1.45876 * 108.84438 * 173.48730 * 13 12 11 16 16 C 1.54524 * 111.68043 * 182.21038 * 15 13 12 17 17 C 1.50543 * 108.85233 * 282.74032 * 16 15 13 18 18 C 1.53907 * 112.93413 * 91.75979 * 17 16 15 19 19 N 1.47951 * 113.33177 * 317.75897 * 18 17 16 20 20 C 1.44154 * 113.57662 * 318.16281 * 19 18 17 21 21 H 0.96991 * 120.00353 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46811 * 60.00334 * 9 7 2 23 23 H 1.08996 * 109.47596 * 299.99740 * 9 7 2 24 24 H 1.09002 * 109.47383 * 60.00312 * 10 9 7 25 25 H 1.08999 * 109.47480 * 299.99961 * 10 9 7 26 26 H 1.09002 * 109.46781 * 60.00166 * 12 11 10 27 27 H 1.08996 * 109.47413 * 300.00737 * 12 11 10 28 28 H 1.08997 * 109.03888 * 302.77578 * 15 13 12 29 29 H 1.08998 * 109.04027 * 61.64583 * 15 13 12 30 30 H 1.08994 * 109.57160 * 42.54781 * 16 15 13 31 31 H 1.09002 * 109.57402 * 162.92983 * 16 15 13 32 32 H 1.08995 * 108.78845 * 212.65254 * 17 16 15 33 33 H 1.09001 * 108.79021 * 330.86623 * 17 16 15 34 34 H 1.08999 * 108.71424 * 78.74847 * 18 17 16 35 35 H 1.08997 * 108.71217 * 196.88967 * 18 17 16 36 36 H 1.00906 * 111.00125 * 192.17899 * 19 18 17 37 37 H 1.09000 * 109.76801 * 335.68083 * 20 19 18 38 38 H 1.08998 * 109.53628 * 215.14794 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5309 -4.8996 -0.0001 12 6 2.3708 -6.0557 -0.0007 13 6 1.5036 -7.3162 -0.0020 14 1 0.8170 -7.2698 -0.8473 15 6 2.3666 -8.4817 -0.1592 16 6 1.5501 -9.7920 -0.2242 17 6 1.1134 -10.1626 1.1680 18 6 -0.2700 -9.5958 1.5335 19 7 -0.4667 -8.1984 1.0892 20 6 0.6852 -7.3582 1.3018 21 1 -0.4850 0.8399 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8902 24 1 2.8720 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8894 26 1 3.0000 -6.0481 0.8893 27 1 3.0001 -6.0472 -0.8906 28 1 2.9430 -8.3760 -1.0782 29 1 3.0533 -8.5323 0.6858 30 1 0.6734 -9.6450 -0.8548 31 1 2.1697 -10.5883 -0.6367 32 1 1.0800 -11.2492 1.2479 33 1 1.8474 -9.7831 1.8789 34 1 -1.0363 -10.2200 1.0738 35 1 -0.3898 -9.6368 2.6161 36 1 -1.2909 -7.7974 1.5112 37 1 1.2965 -7.7673 2.1062 38 1 0.3589 -6.3516 1.5632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700239427.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:58 Heat of formation + Delta-G solvation = -91.644848 kcal Electronic energy + Delta-G solvation = -15904.739133 eV Core-core repulsion = 13359.195907 eV Total energy + Delta-G solvation = -2545.543226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25992 -38.47858 -35.47958 -34.64130 -33.62790 -31.80148 -28.05711 -26.51073 -26.23531 -24.23268 -22.88817 -21.08188 -20.63124 -18.69676 -17.63132 -17.21120 -16.95846 -16.57577 -16.18368 -15.42329 -15.22298 -14.64234 -14.42470 -14.31391 -14.09632 -13.83632 -13.32943 -12.99053 -12.70273 -12.64473 -12.39676 -12.12880 -11.88607 -11.64180 -11.53310 -11.49754 -11.34104 -11.32047 -11.19235 -10.65097 -10.38703 -9.21571 -8.23762 -6.37330 1.40895 1.43518 1.54666 2.37800 2.92266 3.09920 3.27235 3.86139 3.90680 4.00375 4.15908 4.22516 4.38108 4.40930 4.50132 4.52001 4.61999 4.68631 4.77310 4.81208 4.83557 4.91648 4.96584 5.14790 5.19293 5.32858 5.33576 5.41793 5.44680 5.55910 5.57828 5.73311 6.11650 6.29893 6.47604 6.53066 6.78699 7.32631 8.89406 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.061545 B = 0.004294 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.841095 B = 6519.845591 C = 6820.138342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.028 3.972 10 C 0.085 3.915 11 O -0.410 6.410 12 C 0.056 3.944 13 C -0.072 4.072 14 H 0.063 0.937 15 C -0.109 4.109 16 C -0.105 4.105 17 C -0.121 4.121 18 C 0.062 3.938 19 N -0.710 5.710 20 C 0.081 3.919 21 H 0.266 0.734 22 H -0.008 1.008 23 H -0.006 1.006 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.349 0.651 37 H 0.045 0.955 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 -20.047 2.510 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.585 4.585 8 H 0.086 0.914 9 C -0.009 4.009 10 C 0.009 3.991 11 O -0.330 6.330 12 C -0.021 4.021 13 C -0.092 4.092 14 H 0.082 0.918 15 C -0.147 4.147 16 C -0.143 4.143 17 C -0.158 4.158 18 C -0.066 4.066 19 N -0.342 5.342 20 C -0.049 4.049 21 H 0.075 0.925 22 H 0.011 0.989 23 H 0.012 0.988 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.168 0.832 37 H 0.063 0.937 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.150 -20.110 1.909 20.623 hybrid contribution 0.160 1.271 0.891 1.560 sum 4.310 -18.839 2.800 19.528 Atomic orbital electron populations 1.70129 1.08068 1.28104 1.50888 1.26058 0.95820 1.03694 0.94233 0.85295 0.78567 0.77585 0.78656 1.19547 1.20579 1.18368 1.21486 0.93736 0.91495 1.51804 0.91444 1.18926 0.94615 0.91960 0.95378 1.22448 0.94745 0.82963 0.98962 1.87887 1.35353 1.14373 1.95406 1.22807 0.93341 0.85637 1.00265 1.20044 0.97052 0.92714 0.99378 0.91832 1.20542 0.97759 0.94007 1.02374 1.21219 0.99717 0.96150 0.97179 1.21420 0.95773 1.01351 0.97298 1.22308 0.98352 0.88469 0.97480 1.58898 1.06068 1.02980 1.66263 1.21415 0.92144 0.95899 0.95476 0.92528 0.98946 0.98797 0.93782 0.93890 0.93127 0.93070 0.91542 0.91646 0.92117 0.90480 0.89764 0.92549 0.90563 0.94970 0.83215 0.93712 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.98 44.43 29.54 68.60 2.03 46.46 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.55 -32.01 9.11 25.60 0.23 -31.77 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 9 C 0.03 1.62 5.34 29.85 0.16 1.78 16 10 C 0.08 3.86 5.88 71.98 0.42 4.28 16 11 O -0.41 -17.28 9.54 -148.98 -1.42 -18.70 16 12 C 0.06 1.76 5.22 71.98 0.38 2.13 16 13 C -0.07 -1.96 2.06 -12.65 -0.03 -1.98 16 14 H 0.06 1.99 8.08 -2.39 -0.02 1.98 16 15 C -0.11 -2.24 4.51 28.93 0.13 -2.11 16 16 C -0.11 -1.85 5.63 30.32 0.17 -1.68 16 17 C -0.12 -1.92 5.27 30.10 0.16 -1.76 16 18 C 0.06 1.11 6.44 86.41 0.56 1.67 16 19 N -0.71 -16.73 6.18 -514.23 -3.18 -19.91 16 20 C 0.08 2.16 5.48 87.15 0.48 2.64 16 21 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 22 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 23 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.49 8.06 -2.39 -0.02 1.47 16 28 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 29 H 0.06 1.23 7.59 -2.39 -0.02 1.21 16 30 H 0.06 1.26 7.78 -2.39 -0.02 1.24 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 0.93 6.66 -2.39 -0.02 0.91 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 35 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.35 7.79 8.89 -89.69 -0.80 6.99 16 37 H 0.04 1.09 6.78 -2.39 -0.02 1.07 16 38 H 0.05 1.64 7.30 -2.39 -0.02 1.62 16 Total: -1.00 -66.62 298.80 1.05 -65.57 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.21 Total: 10.76 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 3.12 Total: -26.33 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -2.89 Total: -77.75 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.42 Total: -18.70 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -66.62 1.05 -65.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700239427.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.073 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds