Wall clock time and date at job start Mon Mar 30 2020 03:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46917 * 2 1 4 4 C 1.50703 * 109.47026 * 119.99315 * 2 1 3 5 5 H 1.07992 * 120.00181 * 120.00025 * 4 2 1 6 6 C 1.37884 * 119.99895 * 300.00054 * 4 2 1 7 7 N 1.31512 * 119.99714 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00120 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46800 * 89.99601 * 8 6 4 10 10 H 1.48492 * 109.47149 * 209.99576 * 8 6 4 11 11 H 1.48502 * 109.47033 * 329.99946 * 8 6 4 12 12 N 1.46897 * 109.47339 * 239.99193 * 2 1 3 13 13 C 1.48532 * 111.00004 * 187.39390 * 12 2 1 14 14 C 1.55195 * 103.23847 * 200.25762 * 13 12 2 15 15 C 1.54592 * 102.80101 * 37.43736 * 14 13 12 16 16 H 1.09002 * 110.30862 * 96.98158 * 15 14 13 17 17 N 1.46504 * 110.31017 * 219.04952 * 15 14 13 18 18 C 1.34776 * 119.99860 * 272.21445 * 17 15 14 19 19 N 1.34772 * 119.99732 * 179.97438 * 18 17 15 20 20 O 1.21587 * 119.99866 * 359.97438 * 18 17 15 21 21 C 1.47903 * 110.99723 * 70.00394 * 12 2 1 22 22 H 1.08999 * 109.46463 * 60.00796 * 1 2 3 23 23 H 1.08999 * 109.46848 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47341 * 300.00648 * 1 2 3 25 25 H 0.97003 * 119.99826 * 179.97438 * 7 6 4 26 26 H 1.08996 * 110.67351 * 318.72000 * 13 12 2 27 27 H 1.09003 * 110.66251 * 81.68168 * 13 12 2 28 28 H 1.09001 * 110.76380 * 279.12697 * 14 13 12 29 29 H 1.08997 * 110.79759 * 155.76565 * 14 13 12 30 30 H 0.96996 * 119.99705 * 92.20827 * 17 15 14 31 31 H 0.97003 * 120.00224 * 0.02562 * 19 18 17 32 32 H 0.97006 * 119.99810 * 179.97438 * 19 18 17 33 33 H 1.08995 * 109.91938 * 26.48850 * 21 12 2 34 34 H 1.09002 * 109.91571 * 265.19245 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1316 6 6 1.6992 -0.2390 2.4828 7 7 2.1372 -0.8592 3.5567 8 14 0.6247 1.2794 2.6540 9 1 -0.8029 0.8729 2.6996 10 1 0.9757 1.9955 3.9066 11 1 0.8470 2.1767 1.4918 12 7 2.0198 -0.6926 -1.1993 13 6 3.4937 -0.8689 -1.1476 14 6 3.8760 -1.1019 -2.6336 15 6 2.9215 -0.1472 -3.3867 16 1 3.4281 0.7900 -3.6174 17 7 2.4369 -0.7784 -4.6167 18 6 3.1442 -0.6613 -5.7580 19 7 2.6987 -1.2425 -6.8894 20 8 4.1841 -0.0313 -5.7668 21 6 1.7513 0.1024 -2.4172 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.9031 -0.5275 4.4377 26 1 3.9754 0.0298 -0.7625 27 1 3.7564 -1.7350 -0.5402 28 1 3.6930 -2.1370 -2.9220 29 1 4.9158 -0.8285 -2.8131 30 1 1.6072 -1.2808 -4.6097 31 1 1.8689 -1.7448 -6.8825 32 1 3.2076 -1.1578 -7.7110 33 1 1.6974 1.1614 -2.1650 34 1 0.8158 -0.2215 -2.8733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700697630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:27 Heat of formation + Delta-G solvation = -19.062385 kcal Electronic energy + Delta-G solvation = -16162.953541 eV Core-core repulsion = 13517.017384 eV Total energy + Delta-G solvation = -2645.936157 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.98534 -38.24542 -34.76399 -33.76894 -32.62684 -31.14627 -28.32418 -27.65407 -24.91934 -21.90267 -21.48299 -20.29524 -19.52521 -18.35311 -17.23039 -16.75858 -15.52336 -15.34704 -14.98224 -14.36968 -14.04340 -13.59635 -13.45274 -12.62409 -12.53332 -12.21300 -12.05248 -11.59570 -11.11533 -10.97459 -10.60245 -10.50828 -10.44488 -10.22651 -10.07862 -9.77482 -9.50010 -9.10068 -8.84129 -8.59454 -7.54139 -6.09509 -4.08780 2.93475 3.22360 3.24648 3.34488 3.36927 4.37259 4.45665 4.77342 4.96352 5.17414 5.24341 5.50014 5.77076 5.82734 6.03025 6.10971 6.26159 6.30805 6.43485 6.47561 6.58059 6.59894 6.73525 6.78399 6.82277 6.86471 7.22314 7.46775 7.84998 7.93985 7.97224 8.59199 8.62482 8.96349 9.52184 11.03192 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.056589 B = 0.006134 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.678257 B = 4563.678609 C = 4791.061609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.172 3.828 3 H 0.001 0.999 4 C -0.509 4.509 5 H 0.083 0.917 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.501 5.501 13 C 0.056 3.944 14 C -0.136 4.136 15 C 0.152 3.848 16 H 0.090 0.910 17 N -0.732 5.732 18 C 0.703 3.297 19 N -0.872 5.872 20 O -0.598 6.598 21 C 0.028 3.972 22 H 0.026 0.974 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.264 0.736 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.397 0.603 31 H 0.396 0.604 32 H 0.412 0.588 33 H 0.048 0.952 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 -0.146 -16.520 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.064 3.936 3 H 0.019 0.981 4 C -0.547 4.547 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.226 5.226 13 C -0.073 4.073 14 C -0.175 4.175 15 C 0.046 3.954 16 H 0.108 0.892 17 N -0.387 5.387 18 C 0.402 3.598 19 N -0.440 5.440 20 O -0.477 6.477 21 C -0.102 4.102 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.232 0.768 31 H 0.223 0.777 32 H 0.243 0.757 33 H 0.066 0.934 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.682 -0.060 -16.136 16.224 hybrid contribution -0.939 1.125 -0.022 1.465 sum -2.621 1.064 -16.159 16.404 Atomic orbital electron populations 1.22103 0.98384 1.01261 0.98118 1.19913 0.91790 0.92756 0.89119 0.98119 1.20987 1.32094 1.13726 0.87936 0.89931 1.24928 0.95760 0.96588 0.95817 1.69879 1.45629 1.40213 0.97898 0.86872 0.80759 0.83789 0.76845 1.20533 1.22477 1.19477 1.64757 1.12190 1.44020 1.01596 1.23021 0.88543 1.01729 0.93963 1.23035 0.98801 0.99752 0.95936 1.21785 0.94947 0.96358 0.82270 0.89225 1.45294 1.27109 1.57983 1.08355 1.16025 0.83429 0.79706 0.80686 1.43005 1.29606 1.59973 1.11377 1.90956 1.24529 1.46923 1.85254 1.23126 0.97186 0.97227 0.92613 0.95488 0.92085 0.94125 0.92588 0.93735 0.89533 0.90900 0.91188 0.76835 0.77685 0.75680 0.93403 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.73 37.16 0.32 -2.71 16 2 C 0.17 3.99 1.45 -68.86 -0.10 3.89 16 3 H 0.00 0.03 6.87 -51.93 -0.36 -0.32 16 4 C -0.51 -13.97 8.59 -34.44 -0.30 -14.26 16 5 H 0.08 2.45 6.76 -52.49 -0.35 2.10 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 8 Si 0.89 21.74 24.37 -169.99 -4.14 17.59 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.30 -7.32 7.11 56.52 0.40 -6.91 16 11 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 12 N -0.50 -9.95 5.10 -223.71 -1.14 -11.09 16 13 C 0.06 1.05 5.56 -1.76 -0.01 1.05 16 14 C -0.14 -2.14 6.80 -24.73 -0.17 -2.31 16 15 C 0.15 2.26 3.31 -66.57 -0.22 2.04 16 16 H 0.09 1.44 7.60 -51.93 -0.39 1.04 16 17 N -0.73 -8.89 5.07 -57.35 -0.29 -9.18 16 18 C 0.70 9.21 8.84 -86.92 -0.77 8.44 16 19 N -0.87 -7.04 8.88 27.63 0.25 -6.80 16 20 O -0.60 -10.63 16.85 5.29 0.09 -10.54 16 21 C 0.03 0.45 5.57 -2.75 -0.02 0.43 16 22 H 0.03 0.49 7.52 -51.93 -0.39 0.10 16 23 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.04 0.89 8.02 -51.93 -0.42 0.47 16 27 H 0.09 1.76 7.14 -51.93 -0.37 1.39 16 28 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.40 3.81 8.34 -40.82 -0.34 3.47 16 31 H 0.40 1.96 8.84 -40.82 -0.36 1.60 16 32 H 0.41 2.86 8.93 -40.82 -0.36 2.49 16 33 H 0.05 0.80 7.57 -51.93 -0.39 0.40 16 34 H 0.07 1.07 7.63 -51.93 -0.40 0.67 16 LS Contribution 270.16 15.07 4.07 4.07 Total: -1.00 -32.86 270.16 -6.50 -39.36 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.75 Total: 4.39 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.35 Total: -1.51 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.41 Total: -53.37 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.86 -6.50 -39.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700697630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.301 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds