Wall clock time and date at job start Mon Mar 30 2020 03:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46917 * 2 1 4 4 C 1.50703 * 109.47026 * 119.99315 * 2 1 3 5 5 H 1.07992 * 120.00181 * 120.00025 * 4 2 1 6 6 C 1.37884 * 119.99895 * 300.00054 * 4 2 1 7 7 N 1.31512 * 119.99714 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00120 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46800 * 89.99601 * 8 6 4 10 10 H 1.48492 * 109.47149 * 209.99576 * 8 6 4 11 11 H 1.48502 * 109.47033 * 329.99946 * 8 6 4 12 12 N 1.46897 * 109.47339 * 239.99193 * 2 1 3 13 13 C 1.48532 * 111.00004 * 187.39390 * 12 2 1 14 14 C 1.55195 * 103.23847 * 200.25762 * 13 12 2 15 15 C 1.54592 * 102.80101 * 37.43736 * 14 13 12 16 16 H 1.09002 * 110.30862 * 96.98158 * 15 14 13 17 17 N 1.46504 * 110.31017 * 219.04952 * 15 14 13 18 18 C 1.34776 * 119.99860 * 272.21445 * 17 15 14 19 19 N 1.34772 * 119.99732 * 179.97438 * 18 17 15 20 20 O 1.21587 * 119.99866 * 359.97438 * 18 17 15 21 21 C 1.47903 * 110.99723 * 70.00394 * 12 2 1 22 22 H 1.08999 * 109.46463 * 60.00796 * 1 2 3 23 23 H 1.08999 * 109.46848 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47341 * 300.00648 * 1 2 3 25 25 H 0.97003 * 119.99826 * 179.97438 * 7 6 4 26 26 H 1.08996 * 110.67351 * 318.72000 * 13 12 2 27 27 H 1.09003 * 110.66251 * 81.68168 * 13 12 2 28 28 H 1.09001 * 110.76380 * 279.12697 * 14 13 12 29 29 H 1.08997 * 110.79759 * 155.76565 * 14 13 12 30 30 H 0.96996 * 119.99705 * 92.20827 * 17 15 14 31 31 H 0.97003 * 120.00224 * 0.02562 * 19 18 17 32 32 H 0.97006 * 119.99810 * 179.97438 * 19 18 17 33 33 H 1.08995 * 109.91938 * 26.48850 * 21 12 2 34 34 H 1.09002 * 109.91571 * 265.19245 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1316 6 6 1.6992 -0.2390 2.4828 7 7 2.1372 -0.8592 3.5567 8 14 0.6247 1.2794 2.6540 9 1 -0.8029 0.8729 2.6996 10 1 0.9757 1.9955 3.9066 11 1 0.8470 2.1767 1.4918 12 7 2.0198 -0.6926 -1.1993 13 6 3.4937 -0.8689 -1.1476 14 6 3.8760 -1.1019 -2.6336 15 6 2.9215 -0.1472 -3.3867 16 1 3.4281 0.7900 -3.6174 17 7 2.4369 -0.7784 -4.6167 18 6 3.1442 -0.6613 -5.7580 19 7 2.6987 -1.2425 -6.8894 20 8 4.1841 -0.0313 -5.7668 21 6 1.7513 0.1024 -2.4172 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.9031 -0.5275 4.4377 26 1 3.9754 0.0298 -0.7625 27 1 3.7564 -1.7350 -0.5402 28 1 3.6930 -2.1370 -2.9220 29 1 4.9158 -0.8285 -2.8131 30 1 1.6072 -1.2808 -4.6097 31 1 1.8689 -1.7448 -6.8825 32 1 3.2076 -1.1578 -7.7110 33 1 1.6974 1.1614 -2.1650 34 1 0.8158 -0.2215 -2.8733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700697630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:27 Heat of formation + Delta-G solvation = -48.275682 kcal Electronic energy + Delta-G solvation = -16164.220325 eV Core-core repulsion = 13517.017384 eV Total energy + Delta-G solvation = -2647.202941 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10794 -39.64566 -36.27529 -34.89157 -34.19579 -32.81715 -29.83980 -29.04561 -26.87843 -23.40935 -22.66105 -21.61842 -21.14657 -19.34057 -18.74364 -18.19351 -17.21472 -16.54856 -16.19829 -15.90821 -15.21527 -15.19908 -15.03265 -14.45736 -14.10492 -13.94384 -13.46653 -13.10093 -12.68207 -12.55401 -12.41149 -12.09143 -12.06507 -11.73736 -11.41359 -11.38996 -11.03133 -10.72547 -10.67559 -9.93739 -9.15540 -8.27607 -6.31193 1.31037 1.36287 1.45976 1.97915 2.20609 2.32427 3.06186 3.25441 3.60555 3.73411 3.84390 4.22362 4.40484 4.48148 4.55160 4.68117 4.76630 4.78936 4.84839 4.97364 5.00565 5.16863 5.17849 5.43993 5.58231 5.66623 5.93633 6.01008 6.08508 6.19290 6.62356 6.75698 7.15538 7.33985 7.70516 8.88674 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.056589 B = 0.006134 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.678257 B = 4563.678609 C = 4791.061609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.174 3.826 3 H -0.007 1.007 4 C -0.510 4.510 5 H 0.043 0.957 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.263 1.263 10 H -0.301 1.301 11 H -0.252 1.252 12 N -0.508 5.508 13 C 0.055 3.945 14 C -0.122 4.122 15 C 0.163 3.837 16 H 0.081 0.919 17 N -0.721 5.721 18 C 0.700 3.300 19 N -0.847 5.847 20 O -0.648 6.648 21 C 0.031 3.969 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.265 0.735 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.413 0.587 31 H 0.414 0.586 32 H 0.420 0.580 33 H 0.048 0.952 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.136 0.618 -18.886 19.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.065 3.935 3 H 0.011 0.989 4 C -0.548 4.548 5 H 0.061 0.939 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.776 3.224 9 H -0.189 1.189 10 H -0.229 1.229 11 H -0.176 1.176 12 N -0.233 5.233 13 C -0.073 4.073 14 C -0.162 4.162 15 C 0.056 3.944 16 H 0.099 0.901 17 N -0.377 5.377 18 C 0.398 3.602 19 N -0.416 5.416 20 O -0.530 6.530 21 C -0.098 4.098 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.250 0.750 31 H 0.245 0.755 32 H 0.253 0.747 33 H 0.067 0.933 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.605 0.662 -18.569 18.927 hybrid contribution -0.290 0.783 0.646 1.055 sum -3.895 1.445 -17.923 18.398 Atomic orbital electron populations 1.21998 0.96380 1.01538 0.99505 1.19772 0.93281 0.91714 0.88703 0.98929 1.21254 1.30984 1.12514 0.90094 0.93914 1.25773 0.97371 0.99886 0.95407 1.70033 1.47787 1.42462 0.98557 0.85859 0.79432 0.80031 0.77078 1.18914 1.22880 1.17599 1.64691 1.12247 1.44527 1.01838 1.22924 0.88543 0.99920 0.95945 1.22909 0.99279 1.00519 0.93460 1.21458 0.94106 0.95811 0.82989 0.90131 1.45013 1.27588 1.57848 1.07294 1.16207 0.82848 0.79563 0.81619 1.42756 1.30098 1.58598 1.10132 1.90933 1.26790 1.49180 1.86088 1.23182 0.98769 0.96786 0.91026 0.91732 0.92443 0.94956 0.92570 0.95324 0.92073 0.90175 0.91019 0.74951 0.75467 0.74683 0.93344 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.73 71.98 0.63 -4.86 16 2 C 0.17 7.89 1.45 44.17 0.06 7.96 16 3 H -0.01 -0.32 6.87 -2.39 -0.02 -0.33 16 4 C -0.51 -28.61 8.59 25.60 0.22 -28.39 16 5 H 0.04 2.67 6.76 -2.91 -0.02 2.65 16 6 C 0.01 0.74 5.45 84.66 0.46 1.21 16 7 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 8 Si 0.95 44.42 24.37 68.60 1.67 46.09 16 9 H -0.26 -11.62 6.87 99.48 0.68 -10.94 16 10 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 11 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16 12 N -0.51 -19.63 5.10 -861.69 -4.40 -24.03 16 13 C 0.06 2.13 5.56 86.74 0.48 2.61 16 14 C -0.12 -3.75 6.80 31.89 0.22 -3.53 16 15 C 0.16 4.50 3.31 45.87 0.15 4.66 16 16 H 0.08 2.45 7.60 -2.39 -0.02 2.43 16 17 N -0.72 -15.28 5.07 -453.61 -2.30 -17.59 16 18 C 0.70 16.50 8.84 179.06 1.58 18.08 16 19 N -0.85 -10.90 8.88 -184.75 -1.64 -12.55 16 20 O -0.65 -22.05 16.85 -3.99 -0.07 -22.11 16 21 C 0.03 0.91 5.57 86.45 0.48 1.39 16 22 H 0.06 2.09 7.52 -2.39 -0.02 2.07 16 23 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.03 1.34 3.27 -2.39 -0.01 1.34 16 25 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.03 1.17 8.02 -2.39 -0.02 1.15 16 27 H 0.06 2.63 7.14 -2.39 -0.02 2.61 16 28 H 0.08 2.34 8.06 -2.39 -0.02 2.32 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.41 6.23 8.34 -92.71 -0.77 5.46 16 31 H 0.41 2.45 8.84 -92.71 -0.82 1.63 16 32 H 0.42 4.56 8.93 -92.70 -0.83 3.74 16 33 H 0.05 1.46 7.57 -2.39 -0.02 1.44 16 34 H 0.10 2.45 7.63 -2.39 -0.02 2.43 16 Total: -1.00 -72.76 270.16 -3.51 -76.27 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -1.36 Total: 13.42 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 4.29 Total: -0.88 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -8.04 Total: -112.79 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.07 Total: -22.11 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.67 Total: 46.09 kcal Total: -72.76 -3.51 -76.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700697630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.993 kcal (2) G-P(sol) polarization free energy of solvation -72.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds