Wall clock time and date at job start Mon Mar 30 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 120.00149 * 2 1 4 4 C 1.50702 * 109.46836 * 270.00364 * 3 2 1 5 5 H 1.07994 * 120.00445 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99368 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00175 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99773 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46720 * 90.00459 * 8 6 4 10 10 H 1.48501 * 109.47014 * 210.00174 * 8 6 4 11 11 H 1.48500 * 109.47090 * 330.00561 * 8 6 4 12 12 C 1.34777 * 119.99736 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99620 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00369 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47466 * 180.02562 * 14 12 2 16 16 O 1.42898 * 109.47319 * 180.02562 * 15 14 12 17 17 C 1.42902 * 114.00186 * 180.02562 * 16 15 14 18 18 C 1.52995 * 117.49622 * 218.61892 * 17 16 15 19 19 C 1.52994 * 117.49857 * 149.99662 * 17 16 15 20 20 H 1.08996 * 109.46784 * 269.99859 * 1 2 3 21 21 H 1.09003 * 109.47146 * 29.99481 * 1 2 3 22 22 H 1.08994 * 109.47096 * 150.00065 * 1 2 3 23 23 H 1.08998 * 109.46420 * 30.00391 * 3 2 1 24 24 H 1.08995 * 109.46904 * 150.00397 * 3 2 1 25 25 H 0.97004 * 119.99914 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.47120 * 59.99760 * 14 12 2 27 27 H 1.08998 * 109.46862 * 300.00562 * 14 12 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 15 14 12 29 29 H 1.09001 * 109.46832 * 299.99964 * 15 14 12 30 30 H 1.09002 * 115.54532 * 4.32983 * 17 16 15 31 31 H 1.08997 * 117.50686 * 0.02562 * 18 17 16 32 32 H 1.09003 * 117.49393 * 145.01845 * 18 17 16 33 33 H 1.08998 * 117.50151 * 214.98095 * 19 17 16 34 34 H 1.08998 * 117.49984 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5534 3.6180 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.3077 4.2593 -3.9012 10 1 4.6979 4.2004 -3.4960 11 1 3.5559 2.2197 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 8 1.6651 -4.8728 -0.0011 17 6 2.5050 -6.0289 -0.0006 18 6 2.0629 -7.2236 -0.8480 19 6 1.9689 -7.2912 0.6776 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5138 23 1 1.6085 2.0283 0.5139 24 1 3.1500 1.1383 0.5138 25 1 4.0296 4.4443 -0.8503 26 1 0.7584 -2.5299 -0.8903 27 1 0.7591 -2.5302 0.8896 28 1 3.0063 -3.5775 0.8895 29 1 3.0062 -3.5775 -0.8905 30 1 3.5746 -5.8328 0.0744 31 1 1.1317 -7.1276 -1.4063 32 1 2.8418 -7.8137 -1.3309 33 1 2.6858 -7.9259 1.1984 34 1 0.9757 -7.2398 1.1237 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713210561.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:19 Heat of formation + Delta-G solvation = -78.656357 kcal Electronic energy + Delta-G solvation = -15440.788181 eV Core-core repulsion = 12759.975084 eV Total energy + Delta-G solvation = -2680.813097 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77046 -39.38616 -36.68742 -36.07188 -34.75363 -32.35743 -29.65932 -27.34856 -25.73295 -23.64902 -23.26966 -22.88817 -19.94977 -18.72338 -18.46901 -17.33482 -17.12644 -17.03859 -16.35154 -15.92665 -15.66476 -14.92605 -14.41820 -14.20660 -13.81414 -13.58663 -13.45289 -13.28306 -13.11482 -12.81134 -12.56346 -12.38790 -12.22253 -12.17707 -11.94315 -11.71177 -11.38680 -10.69013 -10.64955 -10.08811 -9.44868 -8.23456 -6.38637 1.36473 1.39508 1.49854 1.77431 2.06487 2.37852 2.75470 2.93202 3.06177 3.71217 3.88887 3.98317 3.99344 4.12722 4.37445 4.39904 4.46367 4.62118 4.71306 4.77272 4.83933 4.86023 4.97058 5.02636 5.03823 5.21843 5.25402 5.54553 5.81748 6.04621 6.19995 6.67219 6.75186 7.25982 7.42880 8.83757 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.042394 B = 0.004915 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.305285 B = 5695.435421 C = 5954.777389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.609 5.609 3 C 0.257 3.743 4 C -0.546 4.546 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.499 3.501 13 O -0.599 6.599 14 C -0.121 4.121 15 C 0.088 3.912 16 O -0.369 6.369 17 C -0.012 4.012 18 C -0.184 4.184 19 C -0.174 4.174 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.095 0.905 23 H 0.025 0.975 24 H -0.001 1.001 25 H 0.268 0.732 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 -17.463 1.031 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.340 5.340 3 C 0.136 3.864 4 C -0.584 4.584 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.288 3.712 13 O -0.482 6.482 14 C -0.160 4.160 15 C 0.011 3.989 16 O -0.288 6.288 17 C -0.070 4.070 18 C -0.221 4.221 19 C -0.211 4.211 20 H 0.091 0.909 21 H 0.086 0.914 22 H 0.113 0.887 23 H 0.043 0.957 24 H 0.017 0.983 25 H 0.077 0.923 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.020 -17.275 1.086 18.679 hybrid contribution 0.711 0.831 -0.665 1.279 sum -6.310 -16.445 0.421 17.619 Atomic orbital electron populations 1.21979 0.77626 1.04164 1.02798 1.48178 1.08589 1.06298 1.70926 1.18789 0.91172 0.80335 0.96113 1.21718 1.37001 1.06653 0.93039 0.92813 1.25879 0.94818 0.96385 1.02096 1.70053 1.38917 1.14772 1.33090 0.85389 0.78122 0.78203 0.78930 1.18725 1.20572 1.19787 1.21047 0.87654 0.86471 0.76063 1.90641 1.16546 1.88243 1.52728 1.21408 0.98935 0.88599 1.07065 1.22021 0.93548 0.82467 1.00884 1.87691 1.33337 1.13227 1.94532 1.22948 0.94460 0.82353 1.07238 1.23468 1.04290 1.00078 0.94276 1.23423 1.03817 0.98380 0.95453 0.90903 0.91439 0.88671 0.95657 0.98319 0.92345 0.86438 0.85888 0.93053 0.93624 0.86754 0.88491 0.86582 0.86321 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.26 10.24 127.77 1.31 3.57 16 2 N -0.61 -26.09 2.86 -851.13 -2.43 -28.52 16 3 C 0.26 14.08 5.16 85.63 0.44 14.52 16 4 C -0.55 -31.83 9.39 25.60 0.24 -31.59 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.42 5.46 84.65 0.46 0.88 16 7 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 8 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 9 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.50 20.92 7.67 87.66 0.67 21.59 16 13 O -0.60 -31.32 15.56 -3.04 -0.05 -31.37 16 14 C -0.12 -3.47 4.62 29.85 0.14 -3.34 16 15 C 0.09 2.59 5.10 71.98 0.37 2.96 16 16 O -0.37 -9.81 10.60 -148.98 -1.58 -11.39 16 17 C -0.01 -0.26 6.44 30.59 0.20 -0.07 16 18 C -0.18 -3.12 10.48 30.59 0.32 -2.80 16 19 C -0.17 -2.85 10.48 30.59 0.32 -2.53 16 20 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 21 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 22 H 0.09 2.13 6.44 -2.39 -0.02 2.12 16 23 H 0.03 1.40 8.07 -2.39 -0.02 1.38 16 24 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.12 2.91 7.40 -2.39 -0.02 2.90 16 27 H 0.12 2.87 8.11 -2.39 -0.02 2.85 16 28 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 29 H 0.05 1.46 8.10 -2.39 -0.02 1.45 16 30 H 0.11 2.32 7.93 -2.39 -0.02 2.30 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -73.53 294.67 3.79 -69.74 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.06 Total: 7.48 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 4.47 Total: 3.20 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -2.15 Total: -84.81 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.63 Total: -42.76 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -73.53 3.79 -69.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713210561.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.913 kcal (2) G-P(sol) polarization free energy of solvation -73.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds