Wall clock time and date at job start Mon Mar 30 2020 03:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48497 * 109.47270 * 270.00165 * 3 2 1 5 5 H 1.48505 * 109.47067 * 29.99795 * 3 2 1 6 6 H 1.48500 * 109.47229 * 149.99866 * 3 2 1 7 7 C 1.38820 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99457 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99801 * 180.02562 * 7 2 1 10 10 C 1.47454 * 119.99710 * 180.02562 * 9 7 2 11 11 C 1.54025 * 107.07910 * 298.04792 * 10 9 7 12 12 O 1.42895 * 109.47230 * 61.33529 * 11 10 9 13 13 C 1.51891 * 108.60373 * 54.70197 * 10 9 7 14 14 C 1.51922 * 114.08002 * 137.85879 * 13 10 9 15 15 C 1.53122 * 109.52843 * 245.87550 * 14 13 10 16 16 C 1.52637 * 110.13991 * 67.55360 * 15 14 13 17 17 C 1.52935 * 110.66589 * 44.93538 * 16 15 14 18 18 C 1.53487 * 108.92976 * 254.61608 * 17 16 15 19 19 C 1.51783 * 110.86983 * 92.89232 * 18 17 16 20 20 H 0.96994 * 119.99744 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00324 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.46855 * 181.33167 * 11 10 9 23 23 H 1.08997 * 109.47122 * 301.33058 * 11 10 9 24 24 H 0.96696 * 114.00327 * 179.97438 * 12 11 10 25 25 H 1.09780 * 109.77386 * 15.12189 * 13 10 9 26 26 H 1.10346 * 108.87798 * 258.97148 * 13 10 9 27 27 H 1.10152 * 108.63555 * 128.80746 * 14 13 10 28 28 H 1.07704 * 112.82135 * 9.72881 * 14 13 10 29 29 H 1.09054 * 110.00890 * 188.76047 * 15 14 13 30 30 H 1.09509 * 108.83550 * 308.48696 * 15 14 13 31 31 H 1.08821 * 109.93887 * 165.43409 * 16 15 14 32 32 H 1.09414 * 109.34689 * 284.72520 * 16 15 14 33 33 H 1.08367 * 110.93636 * 16.29861 * 17 16 15 34 34 H 1.09585 * 109.12246 * 136.61736 * 17 16 15 35 35 H 1.09859 * 108.39336 * 211.88506 * 18 17 16 36 36 H 1.08677 * 109.42881 * 329.37520 * 18 17 16 37 37 H 1.08602 * 111.67567 * 29.82260 * 19 18 17 38 38 H 1.10937 * 107.90583 * 145.49517 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1170 -2.4791 0.0011 11 6 3.7431 -3.2173 1.3002 12 8 2.3380 -3.4768 1.3131 13 6 3.6394 -3.3144 -1.1742 14 6 4.7539 -4.0247 -1.9234 15 6 4.8636 -3.4535 -3.3398 16 6 5.3556 -2.0095 -3.2875 17 6 6.5278 -1.8737 -2.3147 18 6 6.0351 -1.1854 -1.0343 19 6 5.6113 -2.2105 0.0017 20 1 -0.4849 0.8400 0.0004 21 1 3.8647 -0.3620 0.0007 22 1 4.2872 -4.1604 1.3516 23 1 4.0063 -2.5987 2.1582 24 1 2.0310 -3.9409 2.1039 25 1 3.0814 -2.6819 -1.8769 26 1 2.9290 -4.0746 -0.8066 27 1 4.4916 -5.0905 -2.0168 28 1 5.7015 -3.9679 -1.4146 29 1 5.5508 -4.0573 -3.9335 30 1 3.8725 -3.4700 -3.8054 31 1 5.6770 -1.6909 -4.2771 32 1 4.5392 -1.3602 -2.9574 33 1 6.9526 -2.8432 -2.0824 34 1 7.2997 -1.2420 -2.7687 35 1 6.8614 -0.5919 -0.6199 36 1 5.2238 -0.5049 -1.2789 37 1 6.1739 -3.1344 -0.0946 38 1 5.8663 -1.8082 1.0037 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713446183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:01 Heat of formation + Delta-G solvation = -41.797721 kcal Electronic energy + Delta-G solvation = -17545.074621 eV Core-core repulsion = 15001.692929 eV Total energy + Delta-G solvation = -2543.381692 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.07972 -36.09404 -34.12004 -32.56736 -32.02187 -29.73503 -26.90894 -25.80360 -23.63964 -22.59044 -21.54892 -19.62151 -17.78959 -17.55019 -16.24980 -15.59785 -15.15290 -14.36185 -14.13846 -13.58737 -13.44376 -13.22884 -13.00800 -12.58068 -12.36029 -11.57812 -11.52202 -11.28914 -10.95632 -10.83903 -10.60645 -10.46893 -10.38401 -10.34964 -10.12682 -9.79902 -9.67388 -9.45227 -9.35350 -8.83455 -8.69395 -7.07133 -5.53251 -2.86683 3.46159 3.48321 3.54706 4.73605 4.85130 5.02452 5.13534 5.24253 5.33366 5.47018 5.53434 5.59182 5.63227 5.76084 5.87362 5.96089 6.02926 6.06142 6.13674 6.15861 6.24779 6.30708 6.40639 6.44421 6.46621 6.54589 6.58634 6.77547 6.82066 6.95272 7.00058 7.38208 8.34219 8.49015 8.69902 9.47326 10.15604 10.34650 11.65738 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.011717 C = 0.009940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.552499 B = 2389.161483 C = 2816.216018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.007 4.007 3 Si 0.869 3.131 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.207 4.207 8 H 0.115 0.885 9 N -0.742 5.742 10 C 0.216 3.784 11 C 0.071 3.929 12 O -0.534 6.534 13 C -0.119 4.119 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.115 4.115 18 C -0.116 4.116 19 C -0.112 4.112 20 H 0.254 0.746 21 H 0.356 0.644 22 H 0.020 0.980 23 H 0.031 0.969 24 H 0.352 0.648 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.429 -7.143 -2.059 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.201 4.201 3 Si 0.701 3.299 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.208 1.208 7 C -0.337 4.337 8 H 0.133 0.867 9 N -0.385 5.385 10 C 0.125 3.875 11 C -0.010 4.010 12 O -0.336 6.336 13 C -0.158 4.158 14 C -0.158 4.158 15 C -0.151 4.151 16 C -0.160 4.160 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.150 4.150 20 H 0.064 0.936 21 H 0.190 0.810 22 H 0.038 0.962 23 H 0.049 0.951 24 H 0.196 0.804 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.216 -6.870 -2.630 15.126 hybrid contribution 0.529 1.069 0.707 1.387 sum 13.745 -5.800 -1.923 15.042 Atomic orbital electron populations 1.69682 1.04862 1.24936 1.59726 1.24652 0.95114 0.96398 1.03886 0.86768 0.79235 0.86403 0.77528 1.21514 1.22200 1.20755 1.19459 0.80355 0.95188 1.38649 0.86736 1.43346 1.04210 1.01181 1.89807 1.19472 0.89208 0.86826 0.91990 1.23074 0.82547 0.96091 0.99262 1.86905 1.22379 1.80165 1.44183 1.21847 0.96675 0.99417 0.97847 1.21592 1.00039 0.98410 0.95796 1.21655 1.00571 0.95805 0.97029 1.21660 0.98503 0.97549 0.98334 1.21749 0.97298 1.00224 0.95934 1.21581 1.00831 0.97859 0.95132 1.21386 0.95574 0.99232 0.98820 0.93623 0.80982 0.96222 0.95072 0.80376 0.90413 0.92307 0.94093 0.91179 0.93222 0.92340 0.93254 0.90736 0.91599 0.93310 0.93347 0.90445 0.91115 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.38 13.97 55.49 0.78 -29.60 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.87 22.62 27.74 -169.99 -4.71 17.90 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 7 C -0.21 -5.80 8.33 -15.06 -0.13 -5.93 16 8 H 0.12 3.50 5.92 -52.48 -0.31 3.19 16 9 N -0.74 -17.33 4.36 -47.24 -0.21 -17.53 16 10 C 0.22 4.06 0.84 -131.92 -0.11 3.95 16 11 C 0.07 1.29 5.79 37.69 0.22 1.51 16 12 O -0.53 -10.87 9.40 -35.23 -0.33 -11.20 16 13 C -0.12 -2.20 3.92 -27.84 -0.11 -2.31 16 14 C -0.12 -1.76 5.08 -27.22 -0.14 -1.90 16 15 C -0.11 -1.57 5.46 -26.85 -0.15 -1.72 16 16 C -0.12 -1.76 5.50 -26.95 -0.15 -1.91 16 17 C -0.11 -1.50 5.40 -26.51 -0.14 -1.64 16 18 C -0.12 -1.74 5.20 -27.10 -0.14 -1.88 16 19 C -0.11 -1.73 3.92 -27.94 -0.11 -1.84 16 20 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 21 H 0.36 8.32 4.07 -40.82 -0.17 8.15 16 22 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.03 0.58 8.08 -51.93 -0.42 0.16 16 24 H 0.35 5.51 9.12 45.56 0.42 5.93 16 25 H 0.08 1.68 6.34 -51.49 -0.33 1.35 16 26 H 0.06 1.17 6.81 -51.16 -0.35 0.82 16 27 H 0.04 0.56 8.24 -51.27 -0.42 0.14 16 28 H 0.07 0.94 3.67 -52.65 -0.19 0.74 16 29 H 0.05 0.60 8.15 -51.90 -0.42 0.17 16 30 H 0.06 0.86 8.01 -51.64 -0.41 0.45 16 31 H 0.05 0.64 8.13 -52.03 -0.42 0.21 16 32 H 0.07 1.28 6.63 -51.69 -0.34 0.94 16 33 H 0.07 0.79 5.95 -52.28 -0.31 0.48 16 34 H 0.05 0.57 8.19 -51.60 -0.42 0.15 16 35 H 0.05 0.65 8.21 -51.44 -0.42 0.23 16 36 H 0.08 1.37 5.41 -52.11 -0.28 1.08 16 37 H 0.07 0.93 5.81 -52.15 -0.30 0.63 16 38 H 0.05 0.73 8.06 -50.82 -0.41 0.33 16 LS Contribution 272.39 15.07 4.10 4.10 Total: -1.00 -32.25 272.39 -6.54 -38.79 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.11 Total: 11.51 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -1.05 Total: -13.96 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.57 Total: -47.13 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.33 Total: -11.20 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.25 -6.54 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713446183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.010 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds