Wall clock time and date at job start Mon Mar 30 2020 03:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48497 * 109.47270 * 270.00165 * 3 2 1 5 5 H 1.48505 * 109.47067 * 29.99795 * 3 2 1 6 6 H 1.48500 * 109.47229 * 149.99866 * 3 2 1 7 7 C 1.38820 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99457 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99801 * 180.02562 * 7 2 1 10 10 C 1.47454 * 119.99710 * 180.02562 * 9 7 2 11 11 C 1.54025 * 107.07910 * 298.04792 * 10 9 7 12 12 O 1.42895 * 109.47230 * 61.33529 * 11 10 9 13 13 C 1.51891 * 108.60373 * 54.70197 * 10 9 7 14 14 C 1.51922 * 114.08002 * 137.85879 * 13 10 9 15 15 C 1.53122 * 109.52843 * 245.87550 * 14 13 10 16 16 C 1.52637 * 110.13991 * 67.55360 * 15 14 13 17 17 C 1.52935 * 110.66589 * 44.93538 * 16 15 14 18 18 C 1.53487 * 108.92976 * 254.61608 * 17 16 15 19 19 C 1.51783 * 110.86983 * 92.89232 * 18 17 16 20 20 H 0.96994 * 119.99744 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00324 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.46855 * 181.33167 * 11 10 9 23 23 H 1.08997 * 109.47122 * 301.33058 * 11 10 9 24 24 H 0.96696 * 114.00327 * 179.97438 * 12 11 10 25 25 H 1.09780 * 109.77386 * 15.12189 * 13 10 9 26 26 H 1.10346 * 108.87798 * 258.97148 * 13 10 9 27 27 H 1.10152 * 108.63555 * 128.80746 * 14 13 10 28 28 H 1.07704 * 112.82135 * 9.72881 * 14 13 10 29 29 H 1.09054 * 110.00890 * 188.76047 * 15 14 13 30 30 H 1.09509 * 108.83550 * 308.48696 * 15 14 13 31 31 H 1.08821 * 109.93887 * 165.43409 * 16 15 14 32 32 H 1.09414 * 109.34689 * 284.72520 * 16 15 14 33 33 H 1.08367 * 110.93636 * 16.29861 * 17 16 15 34 34 H 1.09585 * 109.12246 * 136.61736 * 17 16 15 35 35 H 1.09859 * 108.39336 * 211.88506 * 18 17 16 36 36 H 1.08677 * 109.42881 * 329.37520 * 18 17 16 37 37 H 1.08602 * 111.67567 * 29.82260 * 19 18 17 38 38 H 1.10937 * 107.90583 * 145.49517 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1170 -2.4791 0.0011 11 6 3.7431 -3.2173 1.3002 12 8 2.3380 -3.4768 1.3131 13 6 3.6394 -3.3144 -1.1742 14 6 4.7539 -4.0247 -1.9234 15 6 4.8636 -3.4535 -3.3398 16 6 5.3556 -2.0095 -3.2875 17 6 6.5278 -1.8737 -2.3147 18 6 6.0351 -1.1854 -1.0343 19 6 5.6113 -2.2105 0.0017 20 1 -0.4849 0.8400 0.0004 21 1 3.8647 -0.3620 0.0007 22 1 4.2872 -4.1604 1.3516 23 1 4.0063 -2.5987 2.1582 24 1 2.0310 -3.9409 2.1039 25 1 3.0814 -2.6819 -1.8769 26 1 2.9290 -4.0746 -0.8066 27 1 4.4916 -5.0905 -2.0168 28 1 5.7015 -3.9679 -1.4146 29 1 5.5508 -4.0573 -3.9335 30 1 3.8725 -3.4700 -3.8054 31 1 5.6770 -1.6909 -4.2771 32 1 4.5392 -1.3602 -2.9574 33 1 6.9526 -2.8432 -2.0824 34 1 7.2997 -1.2420 -2.7687 35 1 6.8614 -0.5919 -0.6199 36 1 5.2238 -0.5049 -1.2789 37 1 6.1739 -3.1344 -0.0946 38 1 5.8663 -1.8082 1.0037 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713446183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:01 Heat of formation + Delta-G solvation = -65.134958 kcal Electronic energy + Delta-G solvation = -17546.086599 eV Core-core repulsion = 15001.692929 eV Total energy + Delta-G solvation = -2544.393670 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47225 -37.50353 -35.80827 -34.05448 -33.66100 -31.62273 -28.32473 -27.05180 -25.41046 -24.25216 -22.73430 -20.92686 -19.64180 -19.16968 -17.86774 -16.88933 -16.63486 -16.11860 -15.76484 -15.05050 -14.81659 -14.67665 -14.40576 -14.23606 -13.75294 -13.27722 -13.06722 -12.91221 -12.61619 -12.41236 -12.06700 -11.91277 -11.82357 -11.66866 -11.56081 -11.38215 -11.04186 -10.97204 -10.84494 -10.64608 -10.48182 -9.12467 -7.82576 -5.12281 1.35208 1.38574 1.45067 2.58303 3.34702 3.53156 3.71723 3.97076 4.03424 4.08552 4.25611 4.31127 4.38937 4.39395 4.53209 4.65232 4.70215 4.81761 4.89492 4.98623 5.04627 5.15121 5.16858 5.23502 5.26106 5.28723 5.42258 5.53472 5.60094 5.63120 5.68950 5.86050 6.18721 6.47051 7.12184 7.32369 8.02675 8.21695 9.40098 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.011717 C = 0.009940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.552499 B = 2389.161483 C = 2816.216018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.997 5.997 2 C -0.086 4.086 3 Si 0.935 3.065 4 H -0.287 1.287 5 H -0.306 1.306 6 H -0.255 1.255 7 C -0.171 4.171 8 H 0.083 0.917 9 N -0.745 5.745 10 C 0.204 3.796 11 C 0.068 3.932 12 O -0.569 6.569 13 C -0.105 4.105 14 C -0.114 4.114 15 C -0.111 4.111 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.109 4.109 20 H 0.247 0.753 21 H 0.358 0.642 22 H 0.058 0.942 23 H 0.029 0.971 24 H 0.371 0.629 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.104 0.896 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.291 -8.072 -2.046 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.652 5.652 2 C -0.274 4.274 3 Si 0.765 3.235 4 H -0.215 1.215 5 H -0.233 1.233 6 H -0.180 1.180 7 C -0.302 4.302 8 H 0.101 0.899 9 N -0.388 5.388 10 C 0.115 3.885 11 C -0.012 4.012 12 O -0.374 6.374 13 C -0.145 4.145 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.161 4.161 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.147 4.147 20 H 0.056 0.944 21 H 0.192 0.808 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.218 0.782 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.122 0.878 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.151 -7.841 -2.605 19.038 hybrid contribution -0.672 1.204 0.691 1.543 sum 16.479 -6.637 -1.914 17.868 Atomic orbital electron populations 1.69878 1.06844 1.25274 1.63172 1.25354 0.95920 1.00193 1.05919 0.85663 0.78701 0.81609 0.77482 1.21453 1.23319 1.18036 1.19358 0.82471 0.93713 1.34663 0.89897 1.43408 1.02593 1.03332 1.89476 1.19926 0.91375 0.84783 0.92371 1.23106 0.81903 0.97807 0.98380 1.86839 1.24029 1.80791 1.45753 1.21691 0.97583 0.98154 0.97037 1.21535 0.99369 0.98493 0.95738 1.21646 1.00304 0.96088 0.96848 1.21645 0.97956 0.96974 0.99522 1.21730 0.96788 1.01529 0.94485 1.21581 1.00390 0.97679 0.96150 1.21412 0.92674 1.01063 0.99520 0.94402 0.80829 0.92398 0.95285 0.78221 0.94715 0.94539 0.92770 0.88763 0.90178 0.94399 0.91956 0.94760 0.89472 0.91526 0.91237 0.93759 0.87795 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -1.00 -67.25 13.97 21.65 0.30 -66.94 16 2 C -0.09 -5.27 5.50 84.86 0.47 -4.81 16 3 Si 0.94 47.99 27.74 68.60 1.90 49.89 16 4 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 5 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 6 H -0.26 -11.81 6.52 99.48 0.65 -11.17 16 7 C -0.17 -9.85 8.33 84.04 0.70 -9.15 16 8 H 0.08 5.32 5.92 -2.91 -0.02 5.30 16 9 N -0.74 -34.69 4.36 -303.37 -1.32 -36.01 16 10 C 0.20 7.38 0.84 3.02 0.00 7.38 16 11 C 0.07 2.33 5.79 72.33 0.42 2.75 16 12 O -0.57 -23.23 9.40 -148.98 -1.40 -24.63 16 13 C -0.11 -3.86 3.92 29.87 0.12 -3.74 16 14 C -0.11 -2.99 5.08 30.28 0.15 -2.84 16 15 C -0.11 -2.83 5.46 30.51 0.17 -2.67 16 16 C -0.12 -3.28 5.50 30.45 0.17 -3.12 16 17 C -0.11 -2.37 5.40 30.74 0.17 -2.20 16 18 C -0.12 -3.19 5.20 30.36 0.16 -3.04 16 19 C -0.11 -2.94 3.92 29.81 0.12 -2.82 16 20 H 0.25 16.09 8.31 -92.71 -0.77 15.32 16 21 H 0.36 16.39 4.07 -92.71 -0.38 16.01 16 22 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 24 H 0.37 11.56 9.12 -74.06 -0.68 10.89 16 25 H 0.03 1.55 6.34 -1.97 -0.01 1.54 16 26 H 0.04 1.46 6.81 -1.66 -0.01 1.45 16 27 H 0.05 1.30 8.24 -1.77 -0.01 1.29 16 28 H 0.09 2.02 3.67 -3.06 -0.01 2.01 16 29 H 0.08 1.60 8.15 -2.36 -0.02 1.58 16 30 H 0.04 1.10 8.01 -2.12 -0.02 1.08 16 31 H 0.06 1.47 8.13 -2.48 -0.02 1.45 16 32 H 0.03 1.18 6.63 -2.17 -0.01 1.17 16 33 H 0.09 1.57 5.95 -2.72 -0.02 1.55 16 34 H 0.07 1.26 8.19 -2.08 -0.02 1.24 16 35 H 0.07 1.57 8.21 -1.93 -0.02 1.55 16 36 H 0.04 1.49 5.41 -2.56 -0.01 1.48 16 37 H 0.10 2.13 5.81 -2.60 -0.02 2.12 16 38 H 0.05 1.44 8.06 -1.34 -0.01 1.43 16 Total: -1.00 -73.44 272.39 2.09 -71.35 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.03 Total: 30.60 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 2.63 Total: -24.25 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -1.02 Total: -102.96 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -1.40 Total: -24.63 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.90 Total: 49.89 kcal Total: -73.44 2.09 -71.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713446183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.211 kcal (2) G-P(sol) polarization free energy of solvation -73.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds