Wall clock time and date at job start Mon Mar 30 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36936 * 119.99742 * 2 1 4 4 H 1.08002 * 119.99849 * 202.32910 * 3 2 1 5 5 C 1.38810 * 120.00086 * 22.33309 * 3 2 1 6 6 N 1.31618 * 119.99773 * 11.37167 * 5 3 2 7 7 Si 1.86801 * 120.00142 * 191.36762 * 5 3 2 8 8 H 1.48504 * 109.46953 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47055 * 119.99931 * 7 5 3 10 10 H 1.48501 * 109.47152 * 240.00349 * 7 5 3 11 11 C 1.46496 * 119.99869 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47221 * 269.99769 * 11 2 1 13 13 H 1.09006 * 110.36319 * 57.65698 * 12 11 2 14 14 C 1.54930 * 110.40924 * 180.02562 * 12 11 2 15 15 C 1.54951 * 101.29852 * 156.72238 * 14 12 11 16 16 H 1.09009 * 114.44592 * 204.30939 * 15 14 12 17 17 C 1.54769 * 108.49599 * 76.13824 * 15 14 12 18 18 O 1.44453 * 103.45281 * 215.44185 * 17 15 14 19 19 C 1.43841 * 106.50975 * 41.59471 * 18 17 15 20 20 C 1.54169 * 107.12994 * 330.56410 * 19 18 17 21 21 H 1.08999 * 111.75584 * 244.42299 * 20 19 18 22 22 O 1.43219 * 109.01377 * 119.62348 * 20 19 18 23 23 H 1.09002 * 109.47144 * 274.20757 * 1 2 3 24 24 H 1.08998 * 109.47193 * 34.20833 * 1 2 3 25 25 H 1.09005 * 109.46960 * 154.20888 * 1 2 3 26 26 H 0.97009 * 119.99987 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.47056 * 150.00083 * 11 2 1 28 28 H 1.09001 * 109.47363 * 29.99966 * 11 2 1 29 29 H 1.08996 * 111.05504 * 38.71593 * 14 12 11 30 30 H 1.09000 * 111.08751 * 274.73951 * 14 12 11 31 31 H 1.09004 * 110.62456 * 333.93622 * 17 15 14 32 32 H 1.09001 * 110.62830 * 96.79259 * 17 15 14 33 33 H 1.09004 * 109.90191 * 211.18907 * 19 18 17 34 34 H 1.08992 * 109.90385 * 89.94667 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1690 1.2210 -0.3554 5 6 1.5337 2.3430 0.4568 6 7 0.3842 2.2690 1.0936 7 14 2.3362 4.0049 0.1679 8 1 3.6139 3.8168 -0.5652 9 1 1.4261 4.8613 -0.6343 10 1 2.6070 4.6576 1.4740 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 1 1.5103 -1.8061 1.9816 14 6 3.2276 -3.0523 1.4665 15 6 3.8879 -2.9956 2.8672 16 1 4.7907 -3.5986 2.9651 17 6 2.8096 -3.3119 3.9314 18 8 3.1762 -2.4655 5.0431 19 6 3.5540 -1.1957 4.4829 20 6 4.1190 -1.4705 3.0750 21 1 5.1744 -1.2076 3.0048 22 8 3.3199 -0.7790 2.1084 23 1 -0.3633 0.0754 1.0249 24 1 -0.3633 0.8499 -0.5777 25 1 -0.3633 -0.9253 -0.4472 26 1 -0.0465 3.0777 1.4125 27 1 3.1499 -1.1382 -0.5143 28 1 1.6084 -2.0281 -0.5147 29 1 3.9810 -3.0838 0.6794 30 1 2.5470 -3.9001 1.3884 31 1 1.8175 -3.0522 3.5618 32 1 2.8486 -4.3631 4.2169 33 1 4.3177 -0.7283 5.1045 34 1 2.6812 -0.5467 4.4124 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724637871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:58 Heat of formation + Delta-G solvation = -80.651246 kcal Electronic energy + Delta-G solvation = -16809.166565 eV Core-core repulsion = 14128.266964 eV Total energy + Delta-G solvation = -2680.899602 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67469 -38.33952 -36.98711 -33.71556 -33.15485 -31.12909 -29.22021 -27.90696 -26.73434 -24.34546 -23.05203 -21.75291 -21.38493 -18.81306 -17.93112 -17.05962 -16.79628 -16.69777 -16.25651 -15.69943 -15.49313 -15.13412 -14.67407 -14.10131 -13.93136 -13.35831 -13.07930 -12.85447 -12.78319 -12.57338 -12.35982 -12.18900 -12.09822 -11.94472 -11.84121 -11.60944 -11.52952 -10.91666 -10.62515 -10.31576 -8.72524 -7.76715 -5.22113 1.44772 1.45783 1.56051 2.54299 2.77000 2.99507 3.36618 3.48597 3.71324 3.77164 3.88185 4.08053 4.14943 4.21990 4.25264 4.43365 4.65050 4.73076 4.76697 4.79424 4.86052 4.89313 4.94672 5.01582 5.16387 5.32668 5.35401 5.65173 5.68578 5.75074 6.32543 6.44896 7.22206 7.93290 8.34846 9.28257 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.032218 B = 0.008757 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.862862 B = 3196.768286 C = 3534.314899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.616 5.616 3 C -0.231 4.231 4 H 0.065 0.935 5 C -0.060 4.060 6 N -0.945 5.945 7 Si 0.963 3.037 8 H -0.267 1.267 9 H -0.291 1.291 10 H -0.298 1.298 11 C 0.148 3.852 12 C 0.059 3.941 13 H 0.032 0.968 14 C -0.130 4.130 15 C -0.139 4.139 16 H 0.139 0.861 17 C 0.043 3.957 18 O -0.393 6.393 19 C 0.029 3.971 20 C 0.033 3.967 21 H 0.117 0.883 22 O -0.375 6.375 23 H -0.005 1.005 24 H 0.018 0.982 25 H 0.034 0.966 26 H 0.243 0.757 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.048 0.952 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.081 -13.475 1.997 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.338 5.338 3 C -0.361 4.361 4 H 0.083 0.917 5 C -0.254 4.254 6 N -0.593 5.593 7 Si 0.793 3.207 8 H -0.191 1.191 9 H -0.218 1.218 10 H -0.225 1.225 11 C 0.022 3.978 12 C -0.001 4.001 13 H 0.050 0.950 14 C -0.168 4.168 15 C -0.157 4.157 16 H 0.156 0.844 17 C -0.032 4.032 18 O -0.313 6.313 19 C -0.048 4.048 20 C -0.025 4.025 21 H 0.135 0.865 22 O -0.295 6.295 23 H 0.014 0.986 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.974 -13.177 2.201 15.070 hybrid contribution -0.153 1.369 0.181 1.390 sum 6.821 -11.808 2.382 13.843 Atomic orbital electron populations 1.20541 0.82792 0.96175 0.97198 1.44195 1.02076 1.01903 1.85633 1.19398 0.97321 0.86239 1.33170 0.91679 1.25707 0.98648 1.01654 0.99380 1.70251 1.19488 1.26784 1.42799 0.85243 0.78140 0.80611 0.76755 1.19092 1.21791 1.22542 1.21252 0.96361 0.87525 0.92651 1.23899 0.92047 0.88331 0.95814 0.95005 1.23192 1.00159 0.97027 0.96386 1.24166 1.00506 0.95163 0.95875 0.84359 1.23861 0.96709 0.96758 0.85921 1.88871 1.87109 1.24037 1.31235 1.23755 0.99465 0.86255 0.95316 1.24297 0.96749 0.92972 0.88496 0.86535 1.88758 1.53576 1.33813 1.53311 0.98634 0.96316 0.94736 0.94819 0.92924 0.90058 0.88699 0.87545 0.93411 0.85687 0.87718 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.07 9.01 127.77 1.15 10.22 16 2 N -0.62 -31.73 2.91 -726.92 -2.12 -33.84 16 3 C -0.23 -13.19 9.24 84.03 0.78 -12.41 16 4 H 0.07 3.68 7.84 -2.91 -0.02 3.66 16 5 C -0.06 -3.56 5.13 84.86 0.44 -3.13 16 6 N -0.94 -58.80 10.59 21.65 0.23 -58.57 16 7 Si 0.96 47.62 29.57 68.60 2.03 49.64 16 8 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 9 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 10 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 11 C 0.15 5.88 5.48 86.38 0.47 6.36 16 12 C 0.06 2.16 3.25 31.26 0.10 2.26 16 13 H 0.03 1.32 7.15 -2.38 -0.02 1.30 16 14 C -0.13 -3.08 5.90 31.92 0.19 -2.90 16 15 C -0.14 -3.22 4.43 -8.61 -0.04 -3.25 16 16 H 0.14 2.32 8.14 -2.38 -0.02 2.30 16 17 C 0.04 1.09 6.94 72.59 0.50 1.59 16 18 O -0.39 -12.33 11.55 -148.98 -1.72 -14.05 16 19 C 0.03 0.96 7.46 72.38 0.54 1.50 16 20 C 0.03 1.04 4.60 31.90 0.15 1.19 16 21 H 0.12 3.16 8.14 -2.39 -0.02 3.15 16 22 O -0.38 -15.94 10.09 -148.98 -1.50 -17.45 16 23 H 0.00 -0.27 7.42 -2.39 -0.02 -0.28 16 24 H 0.02 1.01 7.19 -2.39 -0.02 1.00 16 25 H 0.03 1.45 7.84 -2.38 -0.02 1.43 16 26 H 0.24 14.73 8.31 -92.70 -0.77 13.96 16 27 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 28 H 0.08 2.69 7.86 -2.39 -0.02 2.67 16 29 H 0.09 2.01 8.07 -2.39 -0.02 1.99 16 30 H 0.11 1.98 8.06 -2.39 -0.02 1.96 16 31 H 0.05 1.36 6.61 -2.38 -0.02 1.35 16 32 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.03 1.39 7.92 -2.39 -0.02 1.37 16 Total: -1.00 -71.46 272.34 2.26 -69.19 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 1.07 Total: 3.64 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.28 Total: 1.44 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -1.89 Total: -92.41 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -3.22 Total: -31.49 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -71.46 2.26 -69.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724637871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.460 kcal (2) G-P(sol) polarization free energy of solvation -71.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds