Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36930 * 120.00215 * 2 1 4 4 H 1.07999 * 120.00097 * 200.36884 * 3 2 1 5 5 C 1.38812 * 120.00016 * 20.36170 * 3 2 1 6 6 N 1.31619 * 119.99911 * 14.99652 * 5 3 2 7 7 Si 1.86799 * 120.00393 * 194.99183 * 5 3 2 8 8 H 1.48500 * 109.47164 * 85.00669 * 7 5 3 9 9 H 1.48499 * 109.47265 * 205.00819 * 7 5 3 10 10 H 1.48498 * 109.46998 * 325.00737 * 7 5 3 11 11 C 1.46505 * 119.99724 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46498 * 269.99708 * 11 2 1 13 13 H 1.09002 * 110.55721 * 303.56949 * 12 11 2 14 14 C 1.54973 * 110.61577 * 180.51830 * 12 11 2 15 15 C 1.54569 * 102.14811 * 203.96935 * 14 12 11 16 16 H 1.09006 * 113.32177 * 258.55007 * 15 14 12 17 17 C 1.54283 * 108.99806 * 132.07573 * 15 14 12 18 18 O 1.44443 * 104.68294 * 224.04896 * 17 15 14 19 19 C 1.44339 * 105.26125 * 41.24024 * 18 17 15 20 20 C 1.54540 * 105.10833 * 319.81168 * 19 18 17 21 21 H 1.09004 * 112.08472 * 260.38030 * 20 19 18 22 22 O 1.43752 * 108.48322 * 136.16755 * 20 19 18 23 23 H 1.08997 * 109.46704 * 275.10196 * 1 2 3 24 24 H 1.09003 * 109.46976 * 35.10253 * 1 2 3 25 25 H 1.09001 * 109.47325 * 155.10138 * 1 2 3 26 26 H 0.97000 * 120.00335 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.46897 * 150.00025 * 11 2 1 28 28 H 1.08997 * 109.47366 * 29.99280 * 11 2 1 29 29 H 1.09003 * 110.86638 * 322.13075 * 14 12 11 30 30 H 1.08995 * 110.86681 * 85.80812 * 14 12 11 31 31 H 1.09000 * 110.40022 * 105.24546 * 17 15 14 32 32 H 1.09003 * 110.49405 * 342.89801 * 17 15 14 33 33 H 1.08992 * 110.31618 * 200.90149 * 19 18 17 34 34 H 1.08999 * 110.40094 * 78.76066 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1791 1.2150 -0.3255 5 6 1.5208 2.3504 0.4183 6 7 0.3877 2.2836 1.0846 7 14 2.2825 4.0126 0.0356 8 1 1.8681 4.4460 -1.3230 9 1 1.8225 5.0099 1.0351 10 1 3.7624 3.9033 0.0904 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 2.9867 -0.9357 1.9911 14 6 3.2385 -3.0462 1.4724 15 6 2.8568 -3.6167 2.8573 16 1 3.6314 -3.4744 3.6110 17 6 2.4449 -5.0947 2.6955 18 8 1.2556 -5.2338 3.5033 19 6 0.4879 -4.0363 3.2586 20 6 1.5278 -2.8941 3.2098 21 1 1.5777 -2.3449 4.1500 22 8 1.2109 -2.0364 2.1006 23 1 -0.3632 0.0914 1.0236 24 1 -0.3633 0.8408 -0.5910 25 1 -0.3634 -0.9321 -0.4327 26 1 -0.0516 3.0973 1.3773 27 1 3.1499 -1.1382 -0.5143 28 1 1.6084 -2.0282 -0.5146 29 1 2.9068 -3.7103 0.6741 30 1 4.3116 -2.8666 1.4088 31 1 3.2332 -5.7513 3.0638 32 1 2.2233 -5.3171 1.6517 33 1 -0.2206 -3.8686 4.0697 34 1 -0.0381 -4.1100 2.3067 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724637872.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -61.102705 kcal Electronic energy + Delta-G solvation = -16575.528605 eV Core-core repulsion = 13895.476691 eV Total energy + Delta-G solvation = -2680.051913 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.28459 -37.14051 -35.16027 -32.24930 -31.46568 -29.59519 -27.97653 -25.82826 -25.27834 -22.63565 -21.63878 -20.38898 -19.93652 -17.02968 -16.60349 -15.91511 -15.45403 -15.03184 -14.80706 -14.38469 -13.56845 -13.43774 -13.16165 -12.62622 -12.30143 -11.93279 -11.70189 -11.24955 -11.02656 -10.95541 -10.77629 -10.71649 -10.52301 -10.41803 -10.07201 -9.93553 -9.79432 -9.72709 -9.04657 -8.48153 -6.70671 -5.65475 -3.09862 3.40973 3.46839 3.48153 3.93370 4.12533 4.54881 4.68342 4.82222 4.92371 5.19251 5.28145 5.37020 5.43449 5.50818 5.66189 5.68462 5.86291 5.93003 5.97838 6.00921 6.12059 6.23364 6.35756 6.51663 6.73412 6.82174 6.93726 7.49813 7.56494 7.82794 7.96082 8.44758 9.29797 9.94088 10.43602 11.38810 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.049909 B = 0.006810 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.885631 B = 4110.746064 C = 4262.493302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.596 5.596 3 C -0.259 4.259 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.902 5.902 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.158 3.842 12 C 0.060 3.940 13 H 0.069 0.931 14 C -0.146 4.146 15 C -0.154 4.154 16 H 0.097 0.903 17 C 0.054 3.946 18 O -0.379 6.379 19 C 0.044 3.956 20 C 0.045 3.955 21 H 0.085 0.915 22 O -0.347 6.347 23 H 0.034 0.966 24 H 0.037 0.963 25 H -0.005 1.005 26 H 0.251 0.749 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 -12.225 2.395 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.318 5.318 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.547 5.547 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.207 1.207 11 C 0.030 3.970 12 C 0.000 4.000 13 H 0.087 0.913 14 C -0.185 4.185 15 C -0.173 4.173 16 H 0.115 0.885 17 C -0.023 4.023 18 O -0.298 6.298 19 C -0.033 4.033 20 C -0.014 4.014 21 H 0.102 0.898 22 O -0.266 6.266 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.014 0.986 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.722 -12.170 2.507 12.971 hybrid contribution 0.679 1.121 0.023 1.311 sum 4.401 -11.049 2.530 12.159 Atomic orbital electron populations 1.20729 0.82143 0.94884 0.99615 1.43929 1.02180 1.00273 1.85413 1.19212 0.97020 0.85122 1.37489 0.91398 1.24979 0.97905 0.98275 0.98543 1.70119 1.18727 1.26604 1.39209 0.86307 0.78555 0.84237 0.77620 1.21489 1.21816 1.20660 1.20911 0.96404 0.88837 0.90856 1.24296 0.83678 0.93652 0.98392 0.91316 1.23292 1.01240 0.98714 0.95226 1.23815 0.98550 0.96070 0.98903 0.88462 1.23523 0.87754 0.95332 0.95705 1.89084 1.33437 1.40369 1.66915 1.23611 0.94127 0.83072 1.02465 1.24115 0.93095 0.91539 0.92654 0.89761 1.88985 1.29234 1.66794 1.41583 0.94816 0.94397 0.98595 0.93842 0.92380 0.93790 0.90526 0.90531 0.89326 0.91811 0.88790 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.45 8.77 59.85 0.52 4.97 16 2 N -0.60 -15.43 2.91 -181.11 -0.53 -15.96 16 3 C -0.26 -7.21 9.68 -15.06 -0.15 -7.36 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.41 16 5 C 0.00 0.04 5.06 -17.43 -0.09 -0.04 16 6 N -0.90 -26.96 10.67 55.49 0.59 -26.37 16 7 Si 0.90 22.09 29.58 -169.99 -5.03 17.06 16 8 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 C 0.16 3.28 5.46 -4.04 -0.02 3.26 16 12 C 0.06 1.14 3.58 -25.69 -0.09 1.05 16 13 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 14 C -0.15 -2.05 6.12 -24.87 -0.15 -2.20 16 15 C -0.15 -2.06 4.18 -87.89 -0.37 -2.43 16 16 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 17 C 0.05 0.65 7.18 37.83 0.27 0.92 16 18 O -0.38 -5.48 11.65 -35.23 -0.41 -5.89 16 19 C 0.04 0.64 7.35 37.97 0.28 0.92 16 20 C 0.04 0.72 4.60 -24.69 -0.11 0.60 16 21 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 22 O -0.35 -7.00 10.44 -35.23 -0.37 -7.37 16 23 H 0.03 0.96 7.40 -51.93 -0.38 0.58 16 24 H 0.04 1.04 7.21 -51.93 -0.37 0.67 16 25 H 0.00 -0.11 7.84 -51.93 -0.41 -0.51 16 26 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.06 1.12 8.03 -51.93 -0.42 0.71 16 28 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 29 H 0.08 1.00 7.10 -51.93 -0.37 0.63 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.75 7.18 -51.93 -0.37 0.37 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.08 7.98 -51.93 -0.41 0.67 16 LS Contribution 274.17 15.07 4.13 4.13 Total: -1.00 -31.27 274.17 -6.75 -38.02 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.23 Total: -3.33 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 0.09 Total: -0.30 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.06 Total: -42.33 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.78 Total: -13.26 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.27 -6.75 -38.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724637872.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.085 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds