Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36930 * 120.00215 * 2 1 4 4 H 1.07999 * 120.00097 * 200.36884 * 3 2 1 5 5 C 1.38812 * 120.00016 * 20.36170 * 3 2 1 6 6 N 1.31619 * 119.99911 * 14.99652 * 5 3 2 7 7 Si 1.86799 * 120.00393 * 194.99183 * 5 3 2 8 8 H 1.48500 * 109.47164 * 85.00669 * 7 5 3 9 9 H 1.48499 * 109.47265 * 205.00819 * 7 5 3 10 10 H 1.48498 * 109.46998 * 325.00737 * 7 5 3 11 11 C 1.46505 * 119.99724 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46498 * 269.99708 * 11 2 1 13 13 H 1.09002 * 110.55721 * 303.56949 * 12 11 2 14 14 C 1.54973 * 110.61577 * 180.51830 * 12 11 2 15 15 C 1.54569 * 102.14811 * 203.96935 * 14 12 11 16 16 H 1.09006 * 113.32177 * 258.55007 * 15 14 12 17 17 C 1.54283 * 108.99806 * 132.07573 * 15 14 12 18 18 O 1.44443 * 104.68294 * 224.04896 * 17 15 14 19 19 C 1.44339 * 105.26125 * 41.24024 * 18 17 15 20 20 C 1.54540 * 105.10833 * 319.81168 * 19 18 17 21 21 H 1.09004 * 112.08472 * 260.38030 * 20 19 18 22 22 O 1.43752 * 108.48322 * 136.16755 * 20 19 18 23 23 H 1.08997 * 109.46704 * 275.10196 * 1 2 3 24 24 H 1.09003 * 109.46976 * 35.10253 * 1 2 3 25 25 H 1.09001 * 109.47325 * 155.10138 * 1 2 3 26 26 H 0.97000 * 120.00335 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.46897 * 150.00025 * 11 2 1 28 28 H 1.08997 * 109.47366 * 29.99280 * 11 2 1 29 29 H 1.09003 * 110.86638 * 322.13075 * 14 12 11 30 30 H 1.08995 * 110.86681 * 85.80812 * 14 12 11 31 31 H 1.09000 * 110.40022 * 105.24546 * 17 15 14 32 32 H 1.09003 * 110.49405 * 342.89801 * 17 15 14 33 33 H 1.08992 * 110.31618 * 200.90149 * 19 18 17 34 34 H 1.08999 * 110.40094 * 78.76066 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1791 1.2150 -0.3255 5 6 1.5208 2.3504 0.4183 6 7 0.3877 2.2836 1.0846 7 14 2.2825 4.0126 0.0356 8 1 1.8681 4.4460 -1.3230 9 1 1.8225 5.0099 1.0351 10 1 3.7624 3.9033 0.0904 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 2.9867 -0.9357 1.9911 14 6 3.2385 -3.0462 1.4724 15 6 2.8568 -3.6167 2.8573 16 1 3.6314 -3.4744 3.6110 17 6 2.4449 -5.0947 2.6955 18 8 1.2556 -5.2338 3.5033 19 6 0.4879 -4.0363 3.2586 20 6 1.5278 -2.8941 3.2098 21 1 1.5777 -2.3449 4.1500 22 8 1.2109 -2.0364 2.1006 23 1 -0.3632 0.0914 1.0236 24 1 -0.3633 0.8408 -0.5910 25 1 -0.3634 -0.9321 -0.4327 26 1 -0.0516 3.0973 1.3773 27 1 3.1499 -1.1382 -0.5143 28 1 1.6084 -2.0282 -0.5146 29 1 2.9068 -3.7103 0.6741 30 1 4.3116 -2.8666 1.4088 31 1 3.2332 -5.7513 3.0638 32 1 2.2233 -5.3171 1.6517 33 1 -0.2206 -3.8686 4.0697 34 1 -0.0381 -4.1100 2.3067 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724637872.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -82.584142 kcal Electronic energy + Delta-G solvation = -16576.460110 eV Core-core repulsion = 13895.476691 eV Total energy + Delta-G solvation = -2680.983418 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49905 -38.49533 -37.03432 -33.68498 -33.20034 -31.13394 -29.25067 -27.89266 -26.83861 -23.90084 -23.29874 -21.78388 -21.35837 -18.70616 -18.15976 -17.21305 -16.81828 -16.54816 -16.31325 -15.72474 -15.32767 -14.99049 -14.96620 -13.98016 -13.80886 -13.41118 -13.11699 -12.99153 -12.73163 -12.53852 -12.46076 -12.16511 -12.04289 -11.90156 -11.82195 -11.71407 -11.53333 -10.88403 -10.61971 -10.47788 -8.79498 -7.80085 -5.26750 1.46265 1.48659 1.56418 2.51589 2.76793 2.98540 3.31132 3.53924 3.63435 3.79041 3.87895 4.07265 4.14446 4.27754 4.33786 4.48932 4.61052 4.77301 4.77983 4.83307 4.84894 4.90490 4.97566 4.99781 5.07646 5.29941 5.33475 5.62949 5.64758 5.78114 6.20256 6.33077 7.15913 7.89111 8.34386 9.23583 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.049909 B = 0.006810 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.885631 B = 4110.746064 C = 4262.493302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.614 5.614 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.058 4.058 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.285 1.285 9 H -0.298 1.298 10 H -0.266 1.266 11 C 0.153 3.847 12 C 0.060 3.940 13 H 0.036 0.964 14 C -0.130 4.130 15 C -0.146 4.146 16 H 0.114 0.886 17 C 0.053 3.947 18 O -0.389 6.389 19 C 0.050 3.950 20 C 0.031 3.969 21 H 0.078 0.922 22 O -0.381 6.381 23 H 0.000 1.000 24 H 0.012 0.988 25 H 0.022 0.978 26 H 0.246 0.754 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 -13.718 2.018 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.337 5.337 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.253 4.253 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.212 1.212 9 H -0.225 1.225 10 H -0.191 1.191 11 C 0.027 3.973 12 C 0.000 4.000 13 H 0.054 0.946 14 C -0.168 4.168 15 C -0.165 4.165 16 H 0.132 0.868 17 C -0.023 4.023 18 O -0.308 6.308 19 C -0.027 4.027 20 C -0.028 4.028 21 H 0.096 0.904 22 O -0.301 6.301 23 H 0.019 0.981 24 H 0.030 0.970 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.537 -13.706 2.122 14.934 hybrid contribution 0.131 1.509 0.142 1.521 sum 5.668 -12.197 2.265 13.639 Atomic orbital electron populations 1.20381 0.82897 0.94970 0.97263 1.44165 1.02161 1.01699 1.85654 1.19616 0.97383 0.86149 1.36322 0.90525 1.25803 0.98665 1.01867 0.98952 1.70306 1.20387 1.26951 1.40870 0.85242 0.78388 0.79596 0.76970 1.21176 1.22490 1.19099 1.21130 0.96779 0.87033 0.92378 1.24030 0.84049 0.95630 0.96302 0.94602 1.23199 1.01784 0.95662 0.96174 1.23836 0.97384 0.96495 0.98810 0.86770 1.23708 0.87630 0.94801 0.96154 1.89082 1.34243 1.39977 1.67467 1.23513 0.93947 0.82711 1.02511 1.24333 0.95534 0.91612 0.91303 0.90383 1.88949 1.30231 1.67874 1.43024 0.98144 0.96971 0.95978 0.94531 0.90790 0.92314 0.88987 0.88234 0.86428 0.91071 0.87870 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.11 8.77 127.77 1.12 11.23 16 2 N -0.61 -31.89 2.91 -726.92 -2.12 -34.01 16 3 C -0.26 -14.77 9.68 84.03 0.81 -13.95 16 4 H 0.08 4.05 7.86 -2.91 -0.02 4.03 16 5 C -0.06 -3.34 5.06 84.86 0.43 -2.91 16 6 N -0.94 -57.80 10.67 21.65 0.23 -57.56 16 7 Si 0.97 45.83 29.58 68.60 2.03 47.86 16 8 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 9 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 C 0.15 6.16 5.46 86.38 0.47 6.63 16 12 C 0.06 2.22 3.58 31.27 0.11 2.33 16 13 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 14 C -0.13 -3.24 6.12 31.80 0.19 -3.05 16 15 C -0.15 -3.49 4.18 -9.02 -0.04 -3.53 16 16 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 17 C 0.05 1.10 7.18 72.42 0.52 1.62 16 18 O -0.39 -10.28 11.65 -148.98 -1.74 -12.01 16 19 C 0.05 1.39 7.35 72.51 0.53 1.92 16 20 C 0.03 0.95 4.60 31.92 0.15 1.10 16 21 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 22 O -0.38 -15.37 10.44 -148.98 -1.56 -16.92 16 23 H 0.00 0.01 7.40 -2.39 -0.02 0.00 16 24 H 0.01 0.67 7.21 -2.39 -0.02 0.65 16 25 H 0.02 1.02 7.84 -2.39 -0.02 1.00 16 26 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 28 H 0.06 2.17 7.86 -2.39 -0.02 2.16 16 29 H 0.09 2.04 7.10 -2.39 -0.02 2.03 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 1.39 7.18 -2.39 -0.02 1.37 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.06 1.89 7.98 -2.39 -0.02 1.87 16 Total: -1.00 -68.22 274.17 2.22 -66.00 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.07 Total: 5.25 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 4.30 Total: 1.41 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -1.89 Total: -91.57 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -3.29 Total: -28.94 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -68.22 2.22 -66.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724637872.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.588 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds