Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 120.00051 * 2 1 4 4 H 1.08010 * 120.00088 * 202.94936 * 3 2 1 5 5 C 1.38812 * 120.00097 * 22.95190 * 3 2 1 6 6 N 1.31612 * 120.00109 * 13.07910 * 5 3 2 7 7 Si 1.86802 * 119.99859 * 193.08220 * 5 3 2 8 8 H 1.48502 * 109.47306 * 89.99691 * 7 5 3 9 9 H 1.48504 * 109.46935 * 209.99777 * 7 5 3 10 10 H 1.48496 * 109.47345 * 329.99805 * 7 5 3 11 11 C 1.46499 * 119.99674 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47370 * 90.00060 * 11 2 1 13 13 H 1.08996 * 110.02395 * 306.35573 * 12 11 2 14 14 C 1.56202 * 110.00863 * 184.99628 * 12 11 2 15 15 C 1.52738 * 100.55714 * 217.68304 * 14 12 11 16 16 H 1.09000 * 112.88204 * 280.37384 * 15 14 12 17 17 C 1.52320 * 120.12738 * 143.25784 * 15 14 12 18 18 O 1.45657 * 103.41437 * 213.71916 * 17 15 14 19 19 C 1.45518 * 109.08502 * 26.12429 * 18 17 15 20 20 C 1.48816 * 105.29464 * 4.46736 * 19 18 17 21 21 H 1.08997 * 105.40609 * 73.76020 * 20 19 18 22 22 O 1.37625 * 135.65860 * 203.29926 * 20 19 18 23 23 H 1.09007 * 109.47090 * 275.12746 * 1 2 3 24 24 H 1.08999 * 109.47110 * 35.12769 * 1 2 3 25 25 H 1.09001 * 109.47587 * 155.12721 * 1 2 3 26 26 H 0.97002 * 120.00300 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.47491 * 329.99706 * 11 2 1 28 28 H 1.09008 * 109.46917 * 210.00223 * 11 2 1 29 29 H 1.09001 * 111.19646 * 99.86355 * 14 12 11 30 30 H 1.08997 * 111.20186 * 335.51210 * 14 12 11 31 31 H 1.08999 * 110.62967 * 95.23554 * 17 15 14 32 32 H 1.09005 * 110.63403 * 332.19437 * 17 15 14 33 33 H 1.09002 * 110.29585 * 123.44645 * 19 18 17 34 34 H 1.08993 * 110.29726 * 245.48273 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1656 1.2229 -0.3647 5 6 1.5380 2.3404 0.4688 6 7 0.4118 2.2604 1.1450 7 14 2.3135 4.0077 0.1397 8 1 1.7950 4.5507 -1.1415 9 1 1.9736 4.9387 1.2457 10 1 3.7885 3.8593 0.0535 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4417 13 1 1.5142 -1.7358 -1.9960 14 6 3.1200 -3.1232 -1.4575 15 6 4.0950 -2.9588 -2.6216 16 1 3.6151 -3.0641 -3.5946 17 6 5.4697 -3.6125 -2.5657 18 8 6.3211 -2.6706 -3.2794 19 6 5.7420 -1.3390 -3.1839 20 6 4.5615 -1.4875 -2.2900 21 1 4.9711 -1.6076 -1.2870 22 8 3.3885 -0.7973 -2.0857 23 1 -0.3633 0.0918 1.0236 24 1 -0.3633 0.8405 -0.5913 25 1 -0.3634 -0.9323 -0.4322 26 1 -0.0159 3.0673 1.4723 27 1 1.6084 -2.0282 0.5148 28 1 3.1499 -1.1382 0.5144 29 1 2.3873 -3.9033 -1.6644 30 1 3.6490 -3.3196 -0.5250 31 1 5.4567 -4.5780 -3.0715 32 1 5.8007 -3.7231 -1.5330 33 1 6.4606 -0.6444 -2.7489 34 1 5.4293 -0.9912 -4.1684 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724645600.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = -31.852528 kcal Electronic energy + Delta-G solvation = -16548.846167 eV Core-core repulsion = 13870.062636 eV Total energy + Delta-G solvation = -2678.783530 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89746 -37.51847 -35.24866 -32.43488 -31.46235 -29.72717 -28.42716 -26.03184 -25.47048 -22.39676 -21.45697 -20.85765 -19.91026 -17.61443 -16.60043 -16.02821 -15.24192 -15.05345 -14.73486 -14.66971 -13.65484 -13.37451 -13.15774 -13.00811 -12.42293 -12.29849 -11.76788 -11.60953 -11.21948 -10.96860 -10.78376 -10.68657 -10.52162 -10.33990 -10.08919 -9.87446 -9.77228 -9.71304 -8.93713 -8.42954 -6.65826 -5.62951 -3.08719 3.31586 3.45552 3.51342 3.53599 3.73875 4.39689 4.56904 4.73057 4.85371 5.14116 5.21626 5.25516 5.41476 5.49547 5.55524 5.65692 5.75243 5.78613 5.83298 5.97814 5.99261 6.15177 6.21132 6.47525 6.58959 6.72833 6.81310 7.40300 7.56369 7.76304 7.96913 8.49574 9.33497 9.95317 10.43644 11.42524 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.035498 B = 0.007825 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.579803 B = 3577.479426 C = 4215.277212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.238 4.238 4 H 0.072 0.928 5 C -0.004 4.004 6 N -0.914 5.914 7 Si 0.904 3.096 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.142 3.858 12 C 0.065 3.935 13 H 0.082 0.918 14 C -0.133 4.133 15 C -0.189 4.189 16 H 0.100 0.900 17 C 0.063 3.937 18 O -0.383 6.383 19 C 0.081 3.919 20 C 0.042 3.958 21 H 0.030 0.970 22 O -0.322 6.322 23 H 0.032 0.968 24 H 0.041 0.959 25 H -0.005 1.005 26 H 0.250 0.750 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -11.614 -6.199 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.319 5.319 3 C -0.367 4.367 4 H 0.090 0.910 5 C -0.201 4.201 6 N -0.560 5.560 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.014 3.986 12 C 0.005 3.995 13 H 0.100 0.900 14 C -0.172 4.172 15 C -0.208 4.208 16 H 0.118 0.882 17 C -0.013 4.013 18 O -0.303 6.303 19 C 0.005 3.995 20 C -0.019 4.019 21 H 0.048 0.952 22 O -0.240 6.240 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.014 0.986 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.396 -11.297 -6.227 14.398 hybrid contribution 0.072 0.806 -0.005 0.809 sum 6.468 -10.492 -6.233 13.811 Atomic orbital electron populations 1.20821 0.82707 0.95318 0.99504 1.43841 1.01685 1.00637 1.85691 1.19268 0.98327 0.85227 1.33926 0.91020 1.25018 0.98056 0.98491 0.98583 1.70067 1.19728 1.26956 1.39274 0.86243 0.78794 0.84225 0.77249 1.21627 1.21946 1.20518 1.21071 0.96751 0.89361 0.91461 1.24955 0.91553 0.84909 0.98046 0.89963 1.22701 0.98521 0.98384 0.97561 1.24209 0.96531 0.99164 1.00900 0.88223 1.22764 0.88471 0.92711 0.97321 1.89302 1.48602 1.16690 1.75733 1.21749 0.92921 0.85106 0.99756 1.22040 0.90750 0.89951 0.99145 0.95219 1.87931 1.21447 1.34738 1.79892 0.94998 0.94002 0.98609 0.93957 0.93106 0.93005 0.90117 0.90199 0.89340 0.91444 0.89412 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.98 59.85 0.54 4.57 16 2 N -0.60 -15.36 2.92 -181.11 -0.53 -15.89 16 3 C -0.24 -6.77 9.31 -15.06 -0.14 -6.91 16 4 H 0.07 2.06 7.64 -52.48 -0.40 1.66 16 5 C 0.00 -0.13 5.10 -17.43 -0.09 -0.22 16 6 N -0.91 -27.40 10.71 55.49 0.59 -26.80 16 7 Si 0.90 22.80 29.57 -169.99 -5.03 17.77 16 8 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 9 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 C 0.14 2.91 5.28 -4.04 -0.02 2.89 16 12 C 0.06 1.15 3.75 -25.01 -0.09 1.05 16 13 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 14 C -0.13 -1.74 6.06 -25.15 -0.15 -1.89 16 15 C -0.19 -2.46 3.81 -88.43 -0.34 -2.80 16 16 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 17 C 0.06 0.73 7.32 36.81 0.27 1.00 16 18 O -0.38 -5.32 11.57 -35.23 -0.41 -5.73 16 19 C 0.08 1.12 7.63 35.11 0.27 1.39 16 20 C 0.04 0.67 3.89 -26.11 -0.10 0.57 16 21 H 0.03 0.49 7.27 -51.93 -0.38 0.12 16 22 O -0.32 -6.44 10.46 -25.17 -0.26 -6.70 16 23 H 0.03 0.86 7.34 -51.93 -0.38 0.47 16 24 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 25 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 26 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.05 0.93 8.07 -51.93 -0.42 0.52 16 28 H 0.05 1.09 8.04 -51.92 -0.42 0.67 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 274.58 15.07 4.14 4.14 Total: -1.00 -31.72 274.58 -6.65 -38.37 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -5.30 Total: -4.80 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.14 Total: -0.35 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.07 Total: -42.69 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.67 Total: -12.43 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.72 -6.65 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724645600.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.515 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds