Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00192 * 2 1 4 4 H 1.48496 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46923 * 299.99721 * 3 2 1 6 6 H 1.48502 * 109.47115 * 59.99851 * 3 2 1 7 7 C 1.37880 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99640 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00208 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47277 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99851 * 177.39740 * 10 9 7 12 12 H 1.09005 * 109.47066 * 174.48084 * 11 10 9 13 13 C 1.53002 * 109.47178 * 294.47883 * 11 10 9 14 14 C 1.52996 * 109.47125 * 295.26114 * 13 11 10 15 15 O 1.42905 * 109.46947 * 176.28379 * 14 13 11 16 16 C 1.52998 * 109.47439 * 54.48271 * 11 10 9 17 17 C 1.54262 * 110.03570 * 177.16549 * 16 11 10 18 18 C 1.54886 * 104.19803 * 217.10231 * 17 16 11 19 19 C 1.54894 * 102.74507 * 37.94167 * 18 17 16 20 20 C 1.53875 * 110.03265 * 59.99476 * 16 11 10 21 21 H 0.97006 * 120.00241 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47297 * 299.99847 * 9 7 2 23 23 H 1.08997 * 109.47179 * 59.99234 * 9 7 2 24 24 H 1.00898 * 110.99746 * 301.34963 * 10 9 7 25 25 H 1.08994 * 109.46821 * 55.26419 * 13 11 10 26 26 H 1.09000 * 109.46893 * 175.25950 * 13 11 10 27 27 H 1.09001 * 109.47230 * 296.27941 * 14 13 11 28 28 H 1.08997 * 109.47227 * 56.27691 * 14 13 11 29 29 H 0.96702 * 113.99896 * 180.02562 * 15 14 13 30 30 H 1.09009 * 110.01602 * 298.60986 * 16 11 10 31 31 H 1.09000 * 110.48720 * 335.78112 * 17 16 11 32 32 H 1.08996 * 110.48857 * 98.42348 * 17 16 11 33 33 H 1.08999 * 110.75996 * 279.62934 * 18 17 16 34 34 H 1.09001 * 110.92066 * 156.32764 * 18 17 16 35 35 H 1.09003 * 110.48173 * 203.37630 * 19 18 17 36 36 H 1.09005 * 110.59745 * 80.79700 * 19 18 17 37 37 H 1.09000 * 110.03605 * 238.57315 * 20 16 11 38 38 H 1.08998 * 110.03075 * 0.02562 * 20 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5062 -4.9061 0.0641 12 1 2.2289 -5.7161 -0.0350 13 6 0.7825 -5.0296 1.4064 14 6 1.8107 -5.0650 2.5388 15 8 1.1331 -5.0932 3.7967 16 6 0.4874 -4.9896 -1.0743 17 6 -0.2047 -6.3681 -1.0640 18 6 -0.3867 -6.7130 -2.5630 19 6 0.9193 -6.1747 -3.1985 20 6 1.2021 -4.8666 -2.4314 21 1 -0.4851 0.8401 -0.0004 22 1 0.6239 -2.5568 0.8903 23 1 0.6246 -2.5571 -0.8896 24 1 2.8136 -3.5724 -0.8022 25 1 0.1212 -4.1740 1.5427 26 1 0.1957 -5.9481 1.4196 27 1 2.4298 -5.9566 2.4397 28 1 2.4409 -4.1773 2.4853 29 1 1.7244 -5.1160 4.5615 30 1 -0.2544 -4.1977 -0.9699 31 1 0.4284 -7.1093 -0.5762 32 1 -1.1727 -6.3054 -0.5669 33 1 -1.2562 -6.2006 -2.9746 34 1 -0.4709 -7.7902 -2.7071 35 1 0.7716 -5.9709 -4.2590 36 1 1.7351 -6.8838 -3.0573 37 1 0.8066 -4.0156 -2.9860 38 1 2.2748 -4.7478 -2.2790 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725128487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = -77.052398 kcal Electronic energy + Delta-G solvation = -16571.031572 eV Core-core repulsion = 14026.121123 eV Total energy + Delta-G solvation = -2544.910449 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.95797 -36.51956 -35.03624 -32.67143 -30.49834 -28.43843 -28.25990 -26.27380 -23.49257 -22.28021 -20.56979 -20.08266 -18.52000 -16.94033 -16.66964 -15.48650 -15.24409 -14.91149 -14.52884 -13.86837 -13.59973 -13.14536 -13.01844 -12.41157 -12.22936 -11.82942 -11.52175 -11.16203 -10.99884 -10.88453 -10.81537 -10.69467 -10.54763 -10.47723 -10.22137 -10.16206 -10.05511 -9.61196 -9.43348 -9.08534 -8.43255 -7.21841 -5.99734 -4.00763 3.32022 3.39487 3.44070 4.45343 4.58636 4.88107 4.88857 5.04057 5.33761 5.36692 5.48942 5.66527 5.69574 5.71507 5.83282 5.87898 5.95148 5.95994 5.99751 6.06212 6.09423 6.26185 6.35338 6.39129 6.54558 6.63387 6.65350 6.73523 6.91130 7.35227 7.50663 7.82411 8.01719 8.18229 8.45219 8.65595 9.08666 9.63614 11.11109 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.008411 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.047646 B = 3328.173797 C = 4308.465869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.060 0.940 9 C 0.190 3.810 10 N -0.684 5.684 11 C 0.099 3.901 12 H 0.064 0.936 13 C -0.109 4.109 14 C 0.082 3.918 15 O -0.582 6.582 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.122 4.122 20 C -0.117 4.117 21 H 0.260 0.740 22 H 0.031 0.969 23 H -0.007 1.007 24 H 0.328 0.672 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.371 0.629 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 -12.696 -1.696 12.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.063 3.937 10 N -0.314 5.314 11 C -0.012 4.012 12 H 0.083 0.917 13 C -0.147 4.147 14 C 0.005 3.995 15 O -0.386 6.386 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.162 4.162 19 C -0.160 4.160 20 C -0.155 4.155 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.011 0.989 24 H 0.145 0.855 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.217 0.783 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.332 -12.504 -1.401 12.653 hybrid contribution 0.496 0.958 -0.589 1.229 sum 1.827 -11.547 -1.990 11.858 Atomic orbital electron populations 1.69968 1.06004 1.26526 1.51131 1.24971 0.94838 0.99236 0.95525 0.86486 0.80068 0.83649 0.77455 1.19748 1.21183 1.21066 1.21247 0.93465 0.90433 1.49941 0.92154 1.19627 0.90855 0.87084 0.96095 1.60876 1.22581 1.01444 1.46456 1.21506 0.93750 0.93646 0.92326 0.91750 1.21538 0.98094 1.02292 0.92759 1.22163 0.94703 0.99959 0.82695 1.86460 1.38288 1.97793 1.16092 1.22497 0.99015 0.97501 0.95469 1.22399 1.00159 0.97001 0.95830 1.22490 0.97820 0.99795 0.96143 1.22343 0.97380 0.97323 0.98946 1.22139 1.00458 0.97251 0.95669 0.93070 0.95111 0.98899 0.85456 0.90477 0.92325 0.95111 0.91524 0.78306 0.89978 0.91890 0.92070 0.91816 0.92251 0.92300 0.92112 0.91842 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.43 9.34 -34.44 -0.32 -14.75 16 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.19 4.83 4.60 -4.98 -0.02 4.81 16 10 N -0.68 -14.06 5.66 -107.99 -0.61 -14.67 16 11 C 0.10 1.70 1.81 -67.71 -0.12 1.58 16 12 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 13 C -0.11 -1.93 4.84 -26.73 -0.13 -2.06 16 14 C 0.08 1.37 6.98 37.16 0.26 1.63 16 15 O -0.58 -9.57 13.66 -35.23 -0.48 -10.06 16 16 C -0.12 -2.05 1.90 -89.50 -0.17 -2.22 16 17 C -0.12 -1.58 5.24 -25.08 -0.13 -1.71 16 18 C -0.12 -1.53 6.91 -24.74 -0.17 -1.70 16 19 C -0.12 -1.54 6.83 -25.07 -0.17 -1.71 16 20 C -0.12 -1.80 6.03 -25.61 -0.15 -1.96 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.03 0.87 6.24 -51.93 -0.32 0.54 16 23 H -0.01 -0.18 6.34 -51.93 -0.33 -0.51 16 24 H 0.33 6.50 7.35 -39.29 -0.29 6.21 16 25 H 0.08 1.63 6.28 -51.93 -0.33 1.30 16 26 H 0.06 0.94 7.13 -51.93 -0.37 0.57 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.24 7.64 -51.93 -0.40 0.85 16 29 H 0.37 4.21 9.12 45.56 0.42 4.62 16 30 H 0.08 1.62 6.51 -51.92 -0.34 1.28 16 31 H 0.06 0.81 7.77 -51.93 -0.40 0.40 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.96 6.48 -51.93 -0.34 0.62 16 LS Contribution 295.51 15.07 4.45 4.45 Total: -1.00 -30.55 295.51 -7.78 -38.33 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.62 Total: 7.87 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -1.23 Total: -16.61 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.12 Total: -40.81 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.48 Total: -10.06 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.55 -7.78 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725128487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.719 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds