Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00192 * 2 1 4 4 H 1.48496 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46923 * 299.99721 * 3 2 1 6 6 H 1.48502 * 109.47115 * 59.99851 * 3 2 1 7 7 C 1.37880 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99640 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00208 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47277 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99851 * 177.39740 * 10 9 7 12 12 H 1.09005 * 109.47066 * 174.48084 * 11 10 9 13 13 C 1.53002 * 109.47178 * 294.47883 * 11 10 9 14 14 C 1.52996 * 109.47125 * 295.26114 * 13 11 10 15 15 O 1.42905 * 109.46947 * 176.28379 * 14 13 11 16 16 C 1.52998 * 109.47439 * 54.48271 * 11 10 9 17 17 C 1.54262 * 110.03570 * 177.16549 * 16 11 10 18 18 C 1.54886 * 104.19803 * 217.10231 * 17 16 11 19 19 C 1.54894 * 102.74507 * 37.94167 * 18 17 16 20 20 C 1.53875 * 110.03265 * 59.99476 * 16 11 10 21 21 H 0.97006 * 120.00241 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47297 * 299.99847 * 9 7 2 23 23 H 1.08997 * 109.47179 * 59.99234 * 9 7 2 24 24 H 1.00898 * 110.99746 * 301.34963 * 10 9 7 25 25 H 1.08994 * 109.46821 * 55.26419 * 13 11 10 26 26 H 1.09000 * 109.46893 * 175.25950 * 13 11 10 27 27 H 1.09001 * 109.47230 * 296.27941 * 14 13 11 28 28 H 1.08997 * 109.47227 * 56.27691 * 14 13 11 29 29 H 0.96702 * 113.99896 * 180.02562 * 15 14 13 30 30 H 1.09009 * 110.01602 * 298.60986 * 16 11 10 31 31 H 1.09000 * 110.48720 * 335.78112 * 17 16 11 32 32 H 1.08996 * 110.48857 * 98.42348 * 17 16 11 33 33 H 1.08999 * 110.75996 * 279.62934 * 18 17 16 34 34 H 1.09001 * 110.92066 * 156.32764 * 18 17 16 35 35 H 1.09003 * 110.48173 * 203.37630 * 19 18 17 36 36 H 1.09005 * 110.59745 * 80.79700 * 19 18 17 37 37 H 1.09000 * 110.03605 * 238.57315 * 20 16 11 38 38 H 1.08998 * 110.03075 * 0.02562 * 20 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5062 -4.9061 0.0641 12 1 2.2289 -5.7161 -0.0350 13 6 0.7825 -5.0296 1.4064 14 6 1.8107 -5.0650 2.5388 15 8 1.1331 -5.0932 3.7967 16 6 0.4874 -4.9896 -1.0743 17 6 -0.2047 -6.3681 -1.0640 18 6 -0.3867 -6.7130 -2.5630 19 6 0.9193 -6.1747 -3.1985 20 6 1.2021 -4.8666 -2.4314 21 1 -0.4851 0.8401 -0.0004 22 1 0.6239 -2.5568 0.8903 23 1 0.6246 -2.5571 -0.8896 24 1 2.8136 -3.5724 -0.8022 25 1 0.1212 -4.1740 1.5427 26 1 0.1957 -5.9481 1.4196 27 1 2.4298 -5.9566 2.4397 28 1 2.4409 -4.1773 2.4853 29 1 1.7244 -5.1160 4.5615 30 1 -0.2544 -4.1977 -0.9699 31 1 0.4284 -7.1093 -0.5762 32 1 -1.1727 -6.3054 -0.5669 33 1 -1.2562 -6.2006 -2.9746 34 1 -0.4709 -7.7902 -2.7071 35 1 0.7716 -5.9709 -4.2590 36 1 1.7351 -6.8838 -3.0573 37 1 0.8066 -4.0156 -2.9860 38 1 2.2748 -4.7478 -2.2790 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725128487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = -99.469175 kcal Electronic energy + Delta-G solvation = -16572.003637 eV Core-core repulsion = 14026.121123 eV Total energy + Delta-G solvation = -2545.882514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.31956 -37.79775 -36.55741 -34.71306 -32.15854 -29.80423 -29.43081 -28.16674 -25.02541 -24.13237 -21.80554 -21.28547 -19.98389 -18.76932 -18.16919 -17.10882 -16.59466 -16.48110 -16.10107 -15.34565 -15.11881 -14.60969 -14.28936 -14.17829 -13.80725 -13.52654 -13.01245 -12.84256 -12.80351 -12.36850 -12.21272 -11.94501 -11.92493 -11.79972 -11.64050 -11.58291 -11.42720 -11.25124 -11.10363 -10.76057 -10.61553 -8.98239 -8.20269 -6.30286 1.38841 1.39750 1.53168 2.39811 3.12862 3.32863 3.60726 3.75459 3.87219 3.91028 4.17749 4.34864 4.45225 4.54414 4.56127 4.62803 4.71036 4.75572 4.81040 4.90538 4.97014 5.07629 5.10516 5.14780 5.22169 5.30815 5.35690 5.38324 5.41797 5.49131 5.58443 5.64883 6.08790 6.53250 6.79043 6.95759 6.96844 7.40161 8.90920 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.008411 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.047646 B = 3328.173797 C = 4308.465869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.214 3.786 10 N -0.680 5.680 11 C 0.101 3.899 12 H 0.097 0.903 13 C -0.107 4.107 14 C 0.087 3.913 15 O -0.599 6.599 16 C -0.123 4.123 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.119 4.119 21 H 0.262 0.738 22 H -0.004 1.004 23 H -0.032 1.032 24 H 0.334 0.666 25 H 0.030 0.970 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.393 0.607 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -14.294 -2.021 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.086 3.914 10 N -0.310 5.310 11 C -0.009 4.009 12 H 0.115 0.885 13 C -0.145 4.145 14 C 0.010 3.990 15 O -0.407 6.407 16 C -0.144 4.144 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.156 4.156 21 H 0.071 0.929 22 H 0.014 0.986 23 H -0.014 1.014 24 H 0.152 0.848 25 H 0.049 0.951 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.243 0.757 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.870 -14.124 -1.717 14.514 hybrid contribution 0.000 1.417 -0.442 1.485 sum 2.870 -12.707 -2.160 13.204 Atomic orbital electron populations 1.70110 1.07776 1.27629 1.51979 1.25924 0.95719 1.03269 0.94930 0.85348 0.79049 0.78671 0.77607 1.18565 1.20424 1.20640 1.21652 0.93743 0.91809 1.49846 0.91972 1.19130 0.90656 0.88360 0.93221 1.60726 1.21820 1.01702 1.46753 1.21624 0.94401 0.92498 0.92372 0.88460 1.21520 0.98031 1.01164 0.93777 1.22056 0.94071 1.00327 0.82536 1.86410 1.39630 1.97790 1.16916 1.22394 0.98034 0.98043 0.95884 1.22379 0.99915 0.95255 0.97380 1.22490 0.97358 1.01395 0.94613 1.22324 0.98171 0.95721 0.98968 1.22125 1.00103 0.98260 0.95151 0.92885 0.98560 1.01439 0.84766 0.95093 0.90293 0.91649 0.94071 0.75746 0.94696 0.89870 0.92540 0.92610 0.89495 0.91384 0.90070 0.94539 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.53 -30.77 9.34 25.60 0.24 -30.53 16 8 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.21 11.47 4.60 85.56 0.39 11.87 16 10 N -0.68 -28.45 5.66 -495.58 -2.81 -31.25 16 11 C 0.10 3.44 1.81 44.92 0.08 3.52 16 12 H 0.10 2.74 8.12 -2.38 -0.02 2.72 16 13 C -0.11 -3.81 4.84 30.59 0.15 -3.66 16 14 C 0.09 2.83 6.98 71.98 0.50 3.33 16 15 O -0.60 -19.16 13.66 -148.98 -2.04 -21.20 16 16 C -0.12 -4.11 1.90 -10.07 -0.02 -4.12 16 17 C -0.11 -2.86 5.24 31.67 0.17 -2.69 16 18 C -0.12 -2.67 6.91 31.89 0.22 -2.45 16 19 C -0.11 -2.60 6.83 31.67 0.22 -2.38 16 20 C -0.12 -3.62 6.03 31.32 0.19 -3.43 16 21 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 22 H 0.00 -0.22 6.24 -2.38 -0.01 -0.23 16 23 H -0.03 -1.85 6.34 -2.39 -0.02 -1.87 16 24 H 0.33 13.26 7.35 -89.70 -0.66 12.60 16 25 H 0.03 1.38 6.28 -2.39 -0.02 1.36 16 26 H 0.08 2.46 7.13 -2.39 -0.02 2.44 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 1.53 7.64 -2.39 -0.02 1.51 16 29 H 0.39 8.32 9.12 -74.06 -0.68 7.65 16 30 H 0.03 1.48 6.51 -2.38 -0.02 1.47 16 31 H 0.08 1.83 7.77 -2.39 -0.02 1.81 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.92 6.48 -2.39 -0.02 1.90 16 Total: -1.00 -68.25 295.51 -0.22 -68.48 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.29 Total: 24.42 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 2.60 Total: -30.13 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -2.52 Total: -88.86 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -2.04 Total: -21.20 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -68.25 -0.22 -68.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725128487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.990 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds