Wall clock time and date at job start Mon Mar 30 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00081 * 2 1 4 4 H 1.08998 * 110.81418 * 31.88319 * 3 2 1 5 5 C 1.54886 * 110.75649 * 268.55122 * 3 2 1 6 6 C 1.54272 * 104.19581 * 203.74011 * 5 3 2 7 7 C 1.53872 * 106.59665 * 23.60579 * 6 5 3 8 8 H 1.08996 * 110.03788 * 240.67007 * 7 6 5 9 9 C 1.50706 * 110.02780 * 119.28526 * 7 6 5 10 10 O 1.21284 * 120.00101 * 241.45509 * 9 7 6 11 11 N 1.34774 * 119.99833 * 61.45577 * 9 7 6 12 12 C 1.46506 * 119.99731 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47006 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 C 1.54266 * 106.59785 * 0.02562 * 7 6 5 22 22 H 1.08992 * 109.47472 * 60.00009 * 1 2 3 23 23 H 1.09003 * 109.47325 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47341 * 299.99621 * 1 2 3 25 25 H 1.09003 * 110.49014 * 85.06382 * 5 3 2 26 26 H 1.08997 * 110.49087 * 322.41532 * 5 3 2 27 27 H 1.09003 * 110.02661 * 264.32450 * 6 5 3 28 28 H 1.08993 * 110.07343 * 142.91683 * 6 5 3 29 29 H 0.96989 * 120.00264 * 359.97438 * 11 9 7 30 30 H 1.09001 * 109.47068 * 60.00448 * 12 11 9 31 31 H 1.08993 * 109.47068 * 299.99902 * 12 11 9 32 32 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 33 33 H 1.08997 * 110.49183 * 95.06786 * 21 7 6 34 34 H 1.09010 * 110.48232 * 217.70877 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3774 2.0112 0.5381 5 6 2.2669 1.7920 -1.4479 6 6 3.3890 2.8405 -1.3013 7 6 4.1314 2.5100 0.0053 8 1 4.0636 3.3502 0.6963 9 6 5.5766 2.1978 -0.2870 10 8 6.0268 1.1038 -0.0197 11 7 6.3686 3.1344 -0.8454 12 6 7.7736 2.8311 -1.1291 13 6 8.4327 4.0368 -1.7479 14 1 7.8622 4.9389 -1.9130 15 6 9.7643 3.9886 -2.1023 16 7 10.4591 2.8903 -1.9008 17 14 10.5814 5.4833 -2.8687 18 1 12.0056 5.1759 -3.1564 19 1 10.5023 6.6284 -1.9265 20 1 9.8861 5.8339 -4.1332 21 6 3.4350 1.2718 0.6067 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.3684 2.2502 -1.8614 26 1 2.5978 0.9646 -2.0755 27 1 2.9600 3.8409 -1.2441 28 1 4.0740 2.7761 -2.1466 29 1 6.0085 4.0092 -1.0596 30 1 7.8314 1.9908 -1.8209 31 1 8.2842 2.5737 -0.2012 32 1 10.0348 2.1143 -1.5025 33 1 3.9547 0.3605 0.3110 34 1 3.3887 1.3503 1.6930 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:53 Heat of formation + Delta-G solvation = -108.228270 kcal Electronic energy + Delta-G solvation = -15703.425932 eV Core-core repulsion = 13021.330501 eV Total energy + Delta-G solvation = -2682.095431 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.78476 -38.17558 -35.69655 -34.42083 -32.42307 -29.07882 -28.74953 -26.72448 -25.90619 -22.94854 -21.32072 -20.77226 -19.23532 -17.66590 -16.80682 -16.14686 -15.94321 -15.02866 -14.96577 -14.51530 -13.90097 -13.78513 -13.39436 -13.00097 -12.59178 -12.32946 -12.08115 -11.68278 -11.49362 -11.38004 -11.14608 -11.02167 -10.78390 -10.68181 -10.58963 -10.16313 -9.64141 -9.13596 -8.77828 -8.68560 -7.99982 -6.51835 -4.25473 3.27773 3.37169 3.39189 3.56823 3.58639 4.08193 4.45076 4.51814 4.60084 4.86424 5.06013 5.13640 5.21171 5.27107 5.34125 5.42213 5.49735 5.52880 5.55739 5.73411 5.84176 5.95525 6.11393 6.22271 6.38297 7.00154 7.14284 7.22242 7.32471 7.65929 8.26127 8.46805 8.71430 8.98771 9.48597 10.88338 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.065974 B = 0.004832 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.307637 B = 5793.745839 C = 6022.648042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.081 3.919 4 H 0.068 0.932 5 C -0.144 4.144 6 C -0.115 4.115 7 C -0.113 4.113 8 H 0.097 0.903 9 C 0.504 3.496 10 O -0.554 6.554 11 N -0.707 5.707 12 C 0.239 3.761 13 C -0.624 4.624 14 H 0.057 0.943 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 1.076 2.924 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.286 1.286 21 C -0.104 4.104 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.039 0.961 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.393 0.607 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.273 0.727 33 H 0.098 0.902 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.999 1.061 2.539 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.023 3.977 4 H 0.086 0.914 5 C -0.182 4.182 6 C -0.153 4.153 7 C -0.135 4.135 8 H 0.115 0.885 9 C 0.289 3.711 10 O -0.434 6.434 11 N -0.355 5.355 12 C 0.117 3.883 13 C -0.662 4.662 14 H 0.075 0.925 15 C -0.184 4.184 16 N -0.536 5.536 17 Si 0.903 3.097 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.213 1.213 21 C -0.142 4.142 22 H 0.058 0.942 23 H 0.102 0.898 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.226 0.774 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.074 0.672 2.114 17.218 hybrid contribution -1.876 0.171 0.510 1.952 sum -18.950 0.843 2.625 19.150 Atomic orbital electron populations 1.22754 0.81538 1.02558 0.99740 1.87950 1.19235 1.27680 1.94889 1.23211 0.94743 0.84126 0.95573 0.91371 1.22832 0.98424 0.99314 0.97664 1.22061 0.97260 0.98988 0.96945 1.21863 0.93244 0.99752 0.98627 0.88518 1.20394 0.87622 0.85012 0.78107 1.90642 1.75830 1.23316 1.53580 1.46260 1.13012 1.15262 1.60948 1.19169 0.76195 0.97204 0.95692 1.22064 0.98519 0.99183 1.46418 0.92499 1.25884 0.94128 1.02707 0.95638 1.70758 1.39575 1.03317 1.39974 0.83446 0.76329 0.73832 0.76079 1.20551 1.21288 1.21290 1.22279 0.92945 0.99267 0.99733 0.94202 0.89815 0.94203 0.91542 0.90392 0.90849 0.90539 0.77446 0.96568 0.96577 0.91687 0.88396 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.89 101.05 1.10 1.37 16 2 O -0.38 -4.88 10.49 -35.23 -0.37 -5.25 16 3 C 0.08 0.97 3.35 -24.73 -0.08 0.89 16 4 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 5 C -0.14 -1.68 6.55 -25.07 -0.16 -1.84 16 6 C -0.11 -1.41 6.36 -25.61 -0.16 -1.57 16 7 C -0.11 -1.64 3.30 -90.65 -0.30 -1.94 16 8 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 9 C 0.50 10.20 6.93 -10.98 -0.08 10.12 16 10 O -0.55 -13.56 15.41 5.55 0.09 -13.47 16 11 N -0.71 -15.12 5.39 -61.47 -0.33 -15.45 16 12 C 0.24 6.39 4.74 -5.19 -0.02 6.36 16 13 C -0.62 -17.26 9.28 -34.44 -0.32 -17.58 16 14 H 0.06 1.48 7.60 -52.48 -0.40 1.09 16 15 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 16 N -0.90 -27.52 13.65 55.43 0.76 -26.77 16 17 Si 1.08 24.45 29.90 -169.99 -5.08 19.37 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.10 -1.49 5.87 -25.07 -0.15 -1.64 16 22 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.30 8.11 -51.93 -0.42 -0.12 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.07 7.59 -51.93 -0.39 0.67 16 29 H 0.39 7.26 8.29 -40.82 -0.34 6.93 16 30 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 31 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 32 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 33 H 0.10 1.72 6.89 -51.93 -0.36 1.36 16 34 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 285.48 15.07 4.30 4.30 Total: -1.00 -33.10 285.48 -6.11 -39.21 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.20 Total: 3.36 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.27 Total: -5.30 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.43 Total: -42.22 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.28 Total: -18.72 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.10 -6.11 -39.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.018 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds