Wall clock time and date at job start Mon Mar 30 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00081 * 2 1 4 4 H 1.08998 * 110.81418 * 31.88319 * 3 2 1 5 5 C 1.54886 * 110.75649 * 268.55122 * 3 2 1 6 6 C 1.54272 * 104.19581 * 203.74011 * 5 3 2 7 7 C 1.53872 * 106.59665 * 23.60579 * 6 5 3 8 8 H 1.08996 * 110.03788 * 240.67007 * 7 6 5 9 9 C 1.50706 * 110.02780 * 119.28526 * 7 6 5 10 10 O 1.21284 * 120.00101 * 241.45509 * 9 7 6 11 11 N 1.34774 * 119.99833 * 61.45577 * 9 7 6 12 12 C 1.46506 * 119.99731 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47006 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 C 1.54266 * 106.59785 * 0.02562 * 7 6 5 22 22 H 1.08992 * 109.47472 * 60.00009 * 1 2 3 23 23 H 1.09003 * 109.47325 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47341 * 299.99621 * 1 2 3 25 25 H 1.09003 * 110.49014 * 85.06382 * 5 3 2 26 26 H 1.08997 * 110.49087 * 322.41532 * 5 3 2 27 27 H 1.09003 * 110.02661 * 264.32450 * 6 5 3 28 28 H 1.08993 * 110.07343 * 142.91683 * 6 5 3 29 29 H 0.96989 * 120.00264 * 359.97438 * 11 9 7 30 30 H 1.09001 * 109.47068 * 60.00448 * 12 11 9 31 31 H 1.08993 * 109.47068 * 299.99902 * 12 11 9 32 32 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 33 33 H 1.08997 * 110.49183 * 95.06786 * 21 7 6 34 34 H 1.09010 * 110.48232 * 217.70877 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3774 2.0112 0.5381 5 6 2.2669 1.7920 -1.4479 6 6 3.3890 2.8405 -1.3013 7 6 4.1314 2.5100 0.0053 8 1 4.0636 3.3502 0.6963 9 6 5.5766 2.1978 -0.2870 10 8 6.0268 1.1038 -0.0197 11 7 6.3686 3.1344 -0.8454 12 6 7.7736 2.8311 -1.1291 13 6 8.4327 4.0368 -1.7479 14 1 7.8622 4.9389 -1.9130 15 6 9.7643 3.9886 -2.1023 16 7 10.4591 2.8903 -1.9008 17 14 10.5814 5.4833 -2.8687 18 1 12.0056 5.1759 -3.1564 19 1 10.5023 6.6284 -1.9265 20 1 9.8861 5.8339 -4.1332 21 6 3.4350 1.2718 0.6067 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.3684 2.2502 -1.8614 26 1 2.5978 0.9646 -2.0755 27 1 2.9600 3.8409 -1.2441 28 1 4.0740 2.7761 -2.1466 29 1 6.0085 4.0092 -1.0596 30 1 7.8314 1.9908 -1.8209 31 1 8.2842 2.5737 -0.2012 32 1 10.0348 2.1143 -1.5025 33 1 3.9547 0.3605 0.3110 34 1 3.3887 1.3503 1.6930 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:53 Heat of formation + Delta-G solvation = -132.915439 kcal Electronic energy + Delta-G solvation = -15704.496448 eV Core-core repulsion = 13021.330501 eV Total energy + Delta-G solvation = -2683.165947 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.20979 -39.36927 -36.83727 -36.40850 -34.46756 -30.37790 -29.77626 -28.38060 -26.90797 -24.97146 -22.81619 -21.73014 -20.81469 -19.36082 -18.26425 -17.37965 -17.17077 -16.66533 -15.98444 -15.76127 -15.59506 -15.31268 -14.71984 -14.52704 -14.25660 -14.06445 -13.51817 -13.12566 -12.67495 -12.56687 -12.48809 -12.25764 -12.23011 -11.91696 -11.80221 -11.53011 -11.01035 -10.77377 -10.74192 -10.48606 -9.99423 -8.81508 -6.57305 1.55552 1.62799 1.65687 1.83456 2.30597 2.57014 2.88748 3.06791 3.46348 3.50792 3.91745 4.08965 4.24069 4.37627 4.43578 4.48194 4.53193 4.59148 4.65957 4.77652 4.86458 4.91252 4.92582 5.01680 5.17155 5.17725 5.25488 5.43609 5.53038 6.05802 6.28774 6.34328 6.77015 7.21879 7.39310 8.57744 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.065974 B = 0.004832 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.307637 B = 5793.745839 C = 6022.648042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.088 3.912 4 H 0.103 0.897 5 C -0.142 4.142 6 C -0.110 4.110 7 C -0.100 4.100 8 H 0.134 0.866 9 C 0.498 3.502 10 O -0.605 6.605 11 N -0.701 5.701 12 C 0.251 3.749 13 C -0.630 4.630 14 H 0.078 0.922 15 C -0.034 4.034 16 N -0.930 5.930 17 Si 1.131 2.869 18 H -0.287 1.287 19 H -0.262 1.262 20 H -0.263 1.263 21 C -0.110 4.110 22 H 0.053 0.947 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.114 0.886 28 H 0.054 0.946 29 H 0.410 0.590 30 H -0.020 1.020 31 H -0.018 1.018 32 H 0.253 0.747 33 H 0.054 0.946 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.482 3.927 2.343 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.031 3.969 4 H 0.121 0.879 5 C -0.180 4.180 6 C -0.148 4.148 7 C -0.122 4.122 8 H 0.152 0.848 9 C 0.286 3.714 10 O -0.487 6.487 11 N -0.350 5.350 12 C 0.128 3.872 13 C -0.667 4.667 14 H 0.096 0.904 15 C -0.232 4.232 16 N -0.566 5.566 17 Si 0.950 3.050 18 H -0.213 1.213 19 H -0.187 1.187 20 H -0.187 1.187 21 C -0.148 4.148 22 H 0.071 0.929 23 H 0.109 0.891 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.073 0.927 29 H 0.246 0.754 30 H -0.002 1.002 31 H 0.000 1.000 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.628 3.555 1.926 20.040 hybrid contribution -1.163 -0.824 0.613 1.551 sum -20.790 2.731 2.539 21.122 Atomic orbital electron populations 1.22977 0.79382 1.03669 1.01171 1.87915 1.21683 1.28431 1.95065 1.23207 0.93483 0.84624 0.95612 0.87913 1.22833 0.99340 0.98433 0.97401 1.22111 0.96821 1.01404 0.94472 1.21920 0.88354 1.01029 1.00849 0.84839 1.21566 0.89880 0.83739 0.76248 1.90623 1.77341 1.25465 1.55260 1.46026 1.11032 1.16574 1.61394 1.18682 0.79248 0.96152 0.93166 1.22434 0.98956 0.99735 1.45579 0.90357 1.27709 0.95475 1.04672 0.95337 1.70908 1.39988 1.03851 1.41867 0.82781 0.74982 0.70631 0.76605 1.21268 1.18661 1.18736 1.22288 0.94628 0.97191 1.00708 0.92875 0.89095 0.92521 0.88332 0.93040 0.86750 0.92723 0.75350 1.00229 1.00026 0.93819 0.92759 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.89 113.37 1.23 1.59 16 2 O -0.41 -9.99 10.49 -148.98 -1.56 -11.56 16 3 C 0.09 1.87 3.35 31.89 0.11 1.98 16 4 H 0.10 1.51 7.89 -2.39 -0.02 1.49 16 5 C -0.14 -2.94 6.55 31.67 0.21 -2.73 16 6 C -0.11 -2.39 6.36 31.32 0.20 -2.19 16 7 C -0.10 -2.71 3.30 -10.81 -0.04 -2.75 16 8 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 9 C 0.50 20.51 6.93 87.66 0.61 21.11 16 10 O -0.60 -31.29 15.41 -3.04 -0.05 -31.33 16 11 N -0.70 -30.25 5.39 -466.78 -2.52 -32.77 16 12 C 0.25 14.01 4.74 85.63 0.41 14.42 16 13 C -0.63 -34.93 9.28 25.60 0.24 -34.69 16 14 H 0.08 3.94 7.60 -2.91 -0.02 3.91 16 15 C -0.03 -1.91 5.46 84.65 0.46 -1.45 16 16 N -0.93 -58.58 13.65 21.45 0.29 -58.28 16 17 Si 1.13 48.00 29.90 68.60 2.05 50.05 16 18 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 21 C -0.11 -3.06 5.87 31.67 0.19 -2.88 16 22 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 0.65 8.11 -2.39 -0.02 0.63 16 25 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.44 7.59 -2.39 -0.02 1.43 16 29 H 0.41 14.58 8.29 -92.72 -0.77 13.82 16 30 H -0.02 -1.25 8.01 -2.39 -0.02 -1.27 16 31 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 32 H 0.25 16.58 7.22 -92.71 -0.67 15.91 16 33 H 0.05 2.00 6.89 -2.39 -0.02 1.98 16 34 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -76.59 285.48 2.24 -74.35 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.41 Total: 17.13 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 3.61 Total: -7.59 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -2.22 Total: -91.05 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -1.61 Total: -42.89 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.05 Total: 50.05 kcal Total: -76.59 2.24 -74.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.569 kcal (2) G-P(sol) polarization free energy of solvation -76.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds