Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34780 * 120.00081 * 2 1 4 4 O 1.21583 * 119.99945 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99781 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99755 * 179.72234 * 5 3 2 7 7 H 1.09002 * 109.49637 * 35.33823 * 6 5 3 8 8 C 1.53047 * 109.49845 * 155.43675 * 6 5 3 9 9 C 1.53040 * 109.53800 * 181.31727 * 8 6 5 10 10 C 1.53191 * 109.31222 * 298.63822 * 9 8 6 11 11 N 1.46923 * 108.77820 * 54.63297 * 10 9 8 12 12 C 1.36936 * 120.63097 * 126.41565 * 11 10 9 13 13 H 1.08000 * 119.99716 * 332.59583 * 12 11 10 14 14 C 1.38809 * 120.00191 * 152.59674 * 12 11 10 15 15 N 1.31624 * 119.99996 * 159.35742 * 14 12 11 16 16 Si 1.86802 * 120.00134 * 339.35453 * 14 12 11 17 17 H 1.48500 * 109.46764 * 92.92049 * 16 14 12 18 18 H 1.48492 * 109.47186 * 212.91965 * 16 14 12 19 19 H 1.48496 * 109.46897 * 332.92130 * 16 14 12 20 20 C 1.46924 * 118.73917 * 306.39130 * 11 10 9 21 21 H 1.08995 * 109.47186 * 60.00064 * 1 2 3 22 22 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47132 * 299.99980 * 1 2 3 24 24 H 0.97003 * 120.00422 * 179.97438 * 2 1 3 25 25 H 0.97003 * 120.00721 * 359.97438 * 5 3 2 26 26 H 1.09002 * 109.45627 * 301.33631 * 8 6 5 27 27 H 1.08992 * 109.45849 * 61.29650 * 8 6 5 28 28 H 1.08992 * 109.49548 * 178.68339 * 9 8 6 29 29 H 1.09004 * 109.49335 * 58.58358 * 9 8 6 30 30 H 1.09001 * 109.58306 * 294.84572 * 10 9 8 31 31 H 1.09001 * 109.58887 * 174.42455 * 10 9 8 32 32 H 0.96998 * 120.00005 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.58864 * 293.82272 * 20 11 10 34 34 H 1.09000 * 109.58484 * 173.39446 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4866 1.1671 -0.0005 6 6 4.2191 2.4359 -0.0067 7 1 3.6754 3.1728 0.5845 8 6 5.6111 2.2250 0.5935 9 6 6.3652 3.5565 0.6177 10 6 6.5295 4.0718 -0.8156 11 7 5.2054 4.1396 -1.4485 12 6 4.7683 5.3001 -2.0293 13 1 5.1359 6.2523 -1.6763 14 6 3.8528 5.2527 -3.0717 15 7 3.1298 6.3137 -3.3613 16 14 3.6470 3.6831 -4.0633 17 1 2.5532 2.8673 -3.4774 18 1 3.3106 4.0258 -5.4684 19 1 4.9135 2.9084 -4.0323 20 6 4.3593 2.9384 -1.4470 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.9500 -0.8400 0.0004 25 1 3.9717 0.3271 -0.0005 26 1 5.5143 1.8440 1.6102 27 1 6.1627 1.5063 -0.0125 28 1 7.3475 3.4101 1.0666 29 1 5.8016 4.2831 1.2031 30 1 7.1688 3.3908 -1.3776 31 1 6.9773 5.0654 -0.7976 32 1 2.4904 6.2807 -4.0900 33 1 4.8215 2.1651 -2.0605 34 1 3.3750 3.1843 -1.8456 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176114518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = -4.890270 kcal Electronic energy + Delta-G solvation = -16613.479970 eV Core-core repulsion = 13968.158362 eV Total energy + Delta-G solvation = -2645.321608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.78986 -37.71604 -34.43400 -34.11740 -32.62288 -30.64406 -29.28200 -26.19021 -25.23298 -22.73109 -21.76270 -20.50895 -19.60239 -18.21487 -16.78002 -16.21766 -15.38636 -15.00678 -14.30926 -14.21711 -13.98640 -13.76963 -13.27692 -12.83194 -12.68161 -12.32358 -12.15941 -12.11736 -11.52328 -11.03669 -10.69605 -10.56285 -10.19719 -10.14037 -9.80931 -9.69357 -9.39801 -9.04864 -8.71850 -8.39333 -6.89913 -5.86699 -3.22648 2.95146 3.45102 3.53105 3.54111 3.56844 4.44394 4.63006 5.10216 5.17161 5.24482 5.31793 5.53520 5.54937 5.58781 5.83949 5.88852 6.00906 6.08661 6.25685 6.30462 6.49010 6.56706 6.61696 6.67693 6.72689 6.88652 6.98661 7.18187 8.04054 8.25923 8.41233 8.91402 9.01898 9.80654 10.16648 11.29220 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.011609 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.424989 B = 2411.432757 C = 3285.248405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.757 5.757 3 C 0.696 3.304 4 O -0.577 6.577 5 N -0.741 5.741 6 C 0.143 3.857 7 H 0.091 0.909 8 C -0.116 4.116 9 C -0.132 4.132 10 C 0.145 3.855 11 N -0.602 5.602 12 C -0.263 4.263 13 H 0.087 0.913 14 C 0.028 3.972 15 N -0.905 5.905 16 Si 0.882 3.118 17 H -0.287 1.287 18 H -0.304 1.304 19 H -0.272 1.272 20 C 0.119 3.881 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.393 0.607 25 H 0.389 0.611 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.065 0.935 32 H 0.262 0.738 33 H 0.022 0.978 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.836 -15.384 8.047 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.414 5.414 3 C 0.396 3.604 4 O -0.453 6.453 5 N -0.396 5.396 6 C 0.037 3.963 7 H 0.109 0.891 8 C -0.154 4.154 9 C -0.172 4.172 10 C 0.019 3.981 11 N -0.326 5.326 12 C -0.391 4.391 13 H 0.104 0.896 14 C -0.172 4.172 15 N -0.547 5.547 16 Si 0.712 3.288 17 H -0.215 1.215 18 H -0.232 1.232 19 H -0.198 1.198 20 C -0.007 4.007 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.226 0.774 25 H 0.222 0.778 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.132 -14.245 7.928 16.342 hybrid contribution 0.146 -1.764 -0.675 1.895 sum 1.278 -16.009 7.253 17.622 Atomic orbital electron populations 1.21335 0.78573 1.01402 1.02332 1.44940 1.07557 1.07102 1.81790 1.16067 0.82111 0.84197 0.78071 1.90995 1.67654 1.30036 1.56606 1.45303 1.04441 1.09806 1.80008 1.21619 0.91128 0.83790 0.99763 0.89107 1.21682 0.95245 0.98625 0.99831 1.22006 0.99030 0.96277 0.99902 1.20983 0.87229 0.99353 0.90506 1.44291 1.12489 1.09632 1.66147 1.18889 1.23778 0.84876 1.11573 0.89576 1.25254 0.97811 0.96355 0.97735 1.69837 1.23946 1.29652 1.31309 0.86938 0.77970 0.84584 0.79262 1.21461 1.23238 1.19770 1.21713 0.96433 0.89182 0.93421 0.92454 0.91066 0.92538 0.77429 0.77825 0.92502 0.92200 0.92165 0.91602 0.95962 0.91651 0.92800 0.96021 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.23 10.70 59.84 0.64 1.87 16 2 N -0.76 -9.69 5.72 -72.08 -0.41 -10.10 16 3 C 0.70 12.54 8.53 -86.92 -0.74 11.80 16 4 O -0.58 -13.66 16.01 5.29 0.08 -13.58 16 5 N -0.74 -11.82 5.09 -58.55 -0.30 -12.12 16 6 C 0.14 2.73 2.60 -67.80 -0.18 2.55 16 7 H 0.09 2.02 7.59 -51.93 -0.39 1.62 16 8 C -0.12 -1.74 5.35 -26.69 -0.14 -1.88 16 9 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 10 C 0.15 2.86 6.52 -3.71 -0.02 2.84 16 11 N -0.60 -14.94 2.77 -172.32 -0.48 -15.42 16 12 C -0.26 -7.72 10.03 -15.06 -0.15 -7.87 16 13 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 14 C 0.03 0.85 5.23 -17.43 -0.09 0.76 16 15 N -0.90 -29.24 13.97 55.49 0.78 -28.47 16 16 Si 0.88 24.02 24.35 -169.99 -4.14 19.88 16 17 H -0.29 -7.93 6.62 56.52 0.37 -7.56 16 18 H -0.30 -8.29 7.11 56.52 0.40 -7.89 16 19 H -0.27 -7.16 6.64 56.52 0.38 -6.78 16 20 C 0.12 2.80 3.77 -3.71 -0.01 2.79 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.39 3.46 8.84 -40.82 -0.36 3.10 16 25 H 0.39 4.55 8.62 -40.82 -0.35 4.20 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 32 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 33 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16 34 H 0.08 2.19 4.50 -51.93 -0.23 1.95 16 LS Contribution 273.13 15.07 4.12 4.12 Total: -1.00 -36.72 273.13 -6.33 -43.05 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.11 Total: 2.06 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -0.86 Total: 10.58 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.41 Total: -66.10 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.14 Total: 19.88 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -36.72 -6.33 -43.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176114518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.156 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds