Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34780 * 120.00081 * 2 1 4 4 O 1.21583 * 119.99945 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99781 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99755 * 179.72234 * 5 3 2 7 7 H 1.09002 * 109.49637 * 35.33823 * 6 5 3 8 8 C 1.53047 * 109.49845 * 155.43675 * 6 5 3 9 9 C 1.53040 * 109.53800 * 181.31727 * 8 6 5 10 10 C 1.53191 * 109.31222 * 298.63822 * 9 8 6 11 11 N 1.46923 * 108.77820 * 54.63297 * 10 9 8 12 12 C 1.36936 * 120.63097 * 126.41565 * 11 10 9 13 13 H 1.08000 * 119.99716 * 332.59583 * 12 11 10 14 14 C 1.38809 * 120.00191 * 152.59674 * 12 11 10 15 15 N 1.31624 * 119.99996 * 159.35742 * 14 12 11 16 16 Si 1.86802 * 120.00134 * 339.35453 * 14 12 11 17 17 H 1.48500 * 109.46764 * 92.92049 * 16 14 12 18 18 H 1.48492 * 109.47186 * 212.91965 * 16 14 12 19 19 H 1.48496 * 109.46897 * 332.92130 * 16 14 12 20 20 C 1.46924 * 118.73917 * 306.39130 * 11 10 9 21 21 H 1.08995 * 109.47186 * 60.00064 * 1 2 3 22 22 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47132 * 299.99980 * 1 2 3 24 24 H 0.97003 * 120.00422 * 179.97438 * 2 1 3 25 25 H 0.97003 * 120.00721 * 359.97438 * 5 3 2 26 26 H 1.09002 * 109.45627 * 301.33631 * 8 6 5 27 27 H 1.08992 * 109.45849 * 61.29650 * 8 6 5 28 28 H 1.08992 * 109.49548 * 178.68339 * 9 8 6 29 29 H 1.09004 * 109.49335 * 58.58358 * 9 8 6 30 30 H 1.09001 * 109.58306 * 294.84572 * 10 9 8 31 31 H 1.09001 * 109.58887 * 174.42455 * 10 9 8 32 32 H 0.96998 * 120.00005 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.58864 * 293.82272 * 20 11 10 34 34 H 1.09000 * 109.58484 * 173.39446 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4866 1.1671 -0.0005 6 6 4.2191 2.4359 -0.0067 7 1 3.6754 3.1728 0.5845 8 6 5.6111 2.2250 0.5935 9 6 6.3652 3.5565 0.6177 10 6 6.5295 4.0718 -0.8156 11 7 5.2054 4.1396 -1.4485 12 6 4.7683 5.3001 -2.0293 13 1 5.1359 6.2523 -1.6763 14 6 3.8528 5.2527 -3.0717 15 7 3.1298 6.3137 -3.3613 16 14 3.6470 3.6831 -4.0633 17 1 2.5532 2.8673 -3.4774 18 1 3.3106 4.0258 -5.4684 19 1 4.9135 2.9084 -4.0323 20 6 4.3593 2.9384 -1.4470 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.9500 -0.8400 0.0004 25 1 3.9717 0.3271 -0.0005 26 1 5.5143 1.8440 1.6102 27 1 6.1627 1.5063 -0.0125 28 1 7.3475 3.4101 1.0666 29 1 5.8016 4.2831 1.2031 30 1 7.1688 3.3908 -1.3776 31 1 6.9773 5.0654 -0.7976 32 1 2.4904 6.2807 -4.0900 33 1 4.8215 2.1651 -2.0605 34 1 3.3750 3.1843 -1.8456 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176114518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = -35.907670 kcal Electronic energy + Delta-G solvation = -16614.824985 eV Core-core repulsion = 13968.158362 eV Total energy + Delta-G solvation = -2646.666624 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.21032 -39.30635 -35.93377 -35.58337 -34.43779 -32.58095 -30.78563 -27.34253 -27.16765 -24.37846 -23.41363 -21.91851 -21.15763 -19.54198 -18.82439 -17.78305 -17.06678 -16.49761 -15.94179 -15.57947 -15.54848 -15.37880 -15.01079 -14.48427 -14.15055 -13.90589 -13.83658 -13.40843 -13.05511 -12.63988 -12.53616 -12.45892 -11.80842 -11.71557 -11.66206 -11.35808 -11.31208 -10.81629 -10.40790 -9.86371 -8.92831 -8.22019 -5.52151 1.25285 1.28644 1.39468 1.71814 2.13529 2.37527 2.98976 3.28729 3.51293 3.83812 4.06833 4.17301 4.35571 4.40834 4.44248 4.62315 4.69888 4.81417 4.88981 4.93074 5.03400 5.10055 5.16940 5.24838 5.45806 5.49231 5.57978 5.84019 6.03890 6.09115 6.88663 7.14891 7.58221 7.62747 7.98953 8.97961 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.011609 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.424989 B = 2411.432757 C = 3285.248405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.736 5.736 3 C 0.686 3.314 4 O -0.643 6.643 5 N -0.724 5.724 6 C 0.153 3.847 7 H 0.050 0.950 8 C -0.104 4.104 9 C -0.125 4.125 10 C 0.136 3.864 11 N -0.618 5.618 12 C -0.248 4.248 13 H 0.056 0.944 14 C -0.038 4.038 15 N -0.956 5.956 16 Si 0.950 3.050 17 H -0.299 1.299 18 H -0.307 1.307 19 H -0.250 1.250 20 C 0.119 3.881 21 H 0.033 0.967 22 H 0.123 0.877 23 H 0.046 0.954 24 H 0.417 0.583 25 H 0.415 0.585 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.260 0.740 33 H 0.037 0.963 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -19.267 9.175 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.393 5.393 3 C 0.385 3.615 4 O -0.524 6.524 5 N -0.381 5.381 6 C 0.046 3.954 7 H 0.068 0.932 8 C -0.142 4.142 9 C -0.164 4.164 10 C 0.012 3.988 11 N -0.343 5.343 12 C -0.378 4.378 13 H 0.074 0.926 14 C -0.232 4.232 15 N -0.602 5.602 16 Si 0.780 3.220 17 H -0.228 1.228 18 H -0.235 1.235 19 H -0.174 1.174 20 C -0.008 4.008 21 H 0.052 0.948 22 H 0.141 0.859 23 H 0.065 0.935 24 H 0.254 0.746 25 H 0.253 0.747 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.059 -18.257 9.087 20.622 hybrid contribution -0.423 -0.551 -0.927 1.159 sum 2.636 -18.808 8.160 20.671 Atomic orbital electron populations 1.21527 0.77541 1.04241 1.00763 1.44774 1.08179 1.06511 1.79812 1.16457 0.82664 0.84607 0.77736 1.90962 1.69067 1.32899 1.59483 1.44966 1.03863 1.09985 1.79250 1.21227 0.93621 0.84298 0.96281 0.93199 1.21661 0.91990 0.98677 1.01895 1.21932 1.01377 0.96246 0.96873 1.21282 0.84768 0.99998 0.92766 1.44453 1.14958 1.08573 1.66361 1.18909 1.22311 0.85862 1.10669 0.92581 1.25930 0.98444 0.99427 0.99438 1.69971 1.25660 1.32103 1.32468 0.85848 0.78190 0.80930 0.77068 1.22769 1.23541 1.17363 1.21671 0.93792 0.88901 0.96418 0.94792 0.85911 0.93500 0.74589 0.74743 0.89156 0.89373 0.87644 0.93537 0.93601 0.92466 0.93146 0.94503 0.95053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.16 10.70 127.77 1.37 3.53 16 2 N -0.74 -16.98 5.72 -500.21 -2.86 -19.84 16 3 C 0.69 23.99 8.53 179.05 1.53 25.51 16 4 O -0.64 -31.34 16.01 -3.98 -0.06 -31.40 16 5 N -0.72 -21.21 5.09 -457.42 -2.33 -23.54 16 6 C 0.15 5.58 2.60 45.07 0.12 5.70 16 7 H 0.05 2.25 7.59 -2.39 -0.02 2.23 16 8 C -0.10 -2.65 5.35 30.62 0.16 -2.48 16 9 C -0.13 -3.54 6.08 30.67 0.19 -3.35 16 10 C 0.14 5.05 6.52 86.36 0.56 5.61 16 11 N -0.62 -30.50 2.77 -699.11 -1.94 -32.43 16 12 C -0.25 -15.00 10.03 84.03 0.84 -14.15 16 13 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 14 C -0.04 -2.39 5.23 84.86 0.44 -1.95 16 15 N -0.96 -64.75 13.97 21.65 0.30 -64.45 16 16 Si 0.95 51.36 24.35 68.60 1.67 53.03 16 17 H -0.30 -16.64 6.62 99.48 0.66 -15.98 16 18 H -0.31 -16.47 7.11 99.48 0.71 -15.77 16 19 H -0.25 -12.36 6.64 99.48 0.66 -11.70 16 20 C 0.12 5.46 3.77 86.36 0.33 5.78 16 21 H 0.03 0.87 8.14 -2.39 -0.02 0.86 16 22 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.42 5.62 8.84 -92.71 -0.82 4.80 16 25 H 0.42 7.79 8.62 -92.71 -0.80 6.99 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 32 H 0.26 16.78 8.31 -92.71 -0.77 16.01 16 33 H 0.04 1.58 7.08 -2.39 -0.02 1.57 16 34 H 0.03 1.75 4.50 -2.39 -0.01 1.74 16 Total: -1.00 -86.60 273.13 -0.28 -86.89 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -0.61 Total: 7.55 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 5.54 Total: 24.20 kcal Atomic # 7 Polarization: -133.44 SS G_CDS: -6.82 Total: -140.26 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.06 Total: -31.40 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 1.67 Total: 53.03 kcal Total: -86.60 -0.28 -86.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176114518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.979 kcal (2) G-P(sol) polarization free energy of solvation -86.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds